src/objtools/data_loaders/genbank/reader_id2_base.cpp File Reference

#include <ncbi_pch.hpp>
#include <corelib/ncbi_param.hpp>
#include <corelib/ncbi_system.hpp>
#include <corelib/request_ctx.hpp>
#include <objtools/data_loaders/genbank/reader_id2_base.hpp>
#include <objtools/data_loaders/genbank/dispatcher.hpp>
#include <objtools/data_loaders/genbank/processors.hpp>
#include <objmgr/objmgr_exception.hpp>
#include <objmgr/annot_selector.hpp>
#include <objmgr/impl/tse_info.hpp>
#include <objmgr/impl/tse_chunk_info.hpp>
#include <objmgr/impl/tse_split_info.hpp>
#include <objtools/data_loaders/genbank/request_result.hpp>
#include <objtools/error_codes.hpp>
#include <corelib/ncbimtx.hpp>
#include <corelib/plugin_manager_impl.hpp>
#include <objects/general/Dbtag.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/seqloc/Seq_id.hpp>
#include <objects/seqset/Seq_entry.hpp>
#include <objects/id2/id2__.hpp>
#include <objects/seqsplit/ID2S_Seq_annot_Info.hpp>
#include <objects/seqsplit/ID2S_Split_Info.hpp>
#include <objects/seqsplit/ID2S_Chunk_Info.hpp>
#include <objects/seqsplit/ID2S_Chunk.hpp>
#include <serial/iterator.hpp>
#include <serial/serial.hpp>
#include <serial/objistr.hpp>
#include <corelib/plugin_manager_store.hpp>
#include <corelib/ncbi_safe_static.hpp>
#include <iomanip>

Include dependency graph for reader_id2_base.cpp:

Go to the source code of this file.

Classes
struct	SId2BlobInfo
struct	SId2LoadedSet
Defines
#define	NCBI_USE_ERRCODE_X   Objtools_Rd_Id2Base
#define	DEFAULT_DEBUG_LEVEL   CId2ReaderBase::eTraceError
#define	MConnFormat   MSerial_AsnBinary
Functions
	NCBI_PARAM_DECL (int, GENBANK, ID2_DEBUG)
	NCBI_PARAM_DECL (int, GENBANK, ID2_MAX_CHUNKS_REQUEST_SIZE)
	NCBI_PARAM_DEF_EX (int, GENBANK, ID2_DEBUG, CId2ReaderBase::eTraceError, eParam_NoThread, GENBANK_ID2_DEBUG)
	NCBI_PARAM_DEF_EX (int, GENBANK, ID2_MAX_CHUNKS_REQUEST_SIZE, 100, eParam_NoThread, GENBANK_ID2_MAX_CHUNKS_REQUEST_SIZE)
static size_t	GetMaxChunksRequestSize (void)
static bool	SeparateChunksRequests (size_t max_request_size=GetMaxChunksRequestSize())
static bool	LimitChunksRequests (size_t max_request_size=GetMaxChunksRequestSize())
void	LoadedChunksPacket (CID2_Request_Packet &packet, vector< CTSE_Chunk_Info * > &chunks, const CBlob_id &blob_id, vector< AutoPtr< CInitGuard > > &guards)

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Define Documentation

#define DEFAULT_DEBUG_LEVEL   CId2ReaderBase::eTraceError

Definition at line 82 of file reader_id2_base.cpp.

#define MConnFormat   MSerial_AsnBinary

Definition at line 177 of file reader_id2_base.cpp.

#define NCBI_USE_ERRCODE_X   Objtools_Rd_Id2Base

Definition at line 73 of file reader_id2_base.cpp.

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Function Documentation

static size_t GetMaxChunksRequestSize (  void   )  [static]

Definition at line 118 of file reader_id2_base.cpp. References NCBI_PARAM_TYPE. Referenced by CId2ReaderBase::LoadBlobs(), CId2ReaderBase::LoadBlobSet(), and CId2ReaderBase::x_LoadSeq_idBlob_idsSet().

static bool LimitChunksRequests (  size_t  max_request_size = GetMaxChunksRequestSize()  )  [inline, static]

Definition at line 135 of file reader_id2_base.cpp. Referenced by CId2ReaderBase::LoadBlobs(), CId2ReaderBase::LoadBlobSet(), and CId2ReaderBase::x_LoadSeq_idBlob_idsSet().

void LoadedChunksPacket (  CID2_Request_Packet &  packet, vector< CTSE_Chunk_Info * > &  chunks, const CBlob_id &  blob_id, vector< AutoPtr< CInitGuard > > &  guards )

Definition at line 565 of file reader_id2_base.cpp. References ERR_POST_X, and NON_CONST_ITERATE.

NCBI_PARAM_DECL (  int  , GENBANK  , ID2_MAX_CHUNKS_REQUEST_SIZE  )

NCBI_PARAM_DECL (  int  , GENBANK  , ID2_DEBUG  )

NCBI_PARAM_DEF_EX (  int  , GENBANK  , ID2_MAX_CHUNKS_REQUEST_SIZE  , 100  , eParam_NoThread  , GENBANK_ID2_MAX_CHUNKS_REQUEST_SIZE  )

NCBI_PARAM_DEF_EX (  int  , GENBANK  , ID2_DEBUG  , CId2ReaderBase::eTraceError  , eParam_NoThread  , GENBANK_ID2_DEBUG  )

static bool SeparateChunksRequests (  size_t  max_request_size = GetMaxChunksRequestSize()  )  [inline, static]

Definition at line 127 of file reader_id2_base.cpp. Referenced by CId2ReaderBase::LoadBlobSet(), CId2ReaderBase::x_LoadSeq_idBlob_idsSet(), and CId2ReaderBase::x_SetExclude_blobs().

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