src/algo/blast/api/psiblast.cpp File Reference

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Detailed Description

Implementation of CPsiBlast.

Definition in file psiblast.cpp.

#include <ncbi_pch.hpp>
#include <algo/blast/api/psiblast.hpp>
#include "psiblast_impl.hpp"
#include "psiblast_aux_priv.hpp"
#include <algo/blast/api/psiblast_options.hpp>
#include <algo/blast/api/psi_pssm_input.hpp>
#include <algo/blast/api/pssm_engine.hpp>
#include "bioseq_extract_data_priv.hpp"
#include <objects/scoremat/PssmWithParameters.hpp>

Include dependency graph for psiblast.cpp:

Go to the source code of this file.

Functions
	USING_SCOPE (objects)
CRef< objects::CPssmWithParameters >	PsiBlastComputePssmFromAlignment (const objects::CBioseq &query, CConstRef< objects::CSeq_align_set > alignment, CRef< objects::CScope > database_scope, const CPSIBlastOptionsHandle &opts_handle, CConstRef< CBlastAncillaryData > ancillary_data, PSIDiagnosticsRequest *diagnostics_req=0)
	Computes a PSSM from the result of a PSI-BLAST iteration.
Variables
static char const	rcsid []

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Variable Documentation

char const rcsid[] [static]

Initial value: "$Id: psiblast.cpp 161402 2009-05-27 17:35:47Z camacho $" Definition at line 2 of file psiblast.cpp.

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