src/algo/align/prosplign/prosplign.cpp File Reference

#include <ncbi_pch.hpp>
#include <algo/align/prosplign/prosplign.hpp>
#include <algo/align/prosplign/prosplign_exception.hpp>
#include "scoring.hpp"
#include "PSeq.hpp"
#include "NSeq.hpp"
#include "nucprot.hpp"
#include "Ali.hpp"
#include "AliSeqAlign.hpp"
#include "Info.hpp"
#include <objects/seqloc/seqloc__.hpp>
#include <objects/seqfeat/seqfeat__.hpp>
#include <objmgr/util/seq_loc_util.hpp>
#include <objmgr/util/sequence.hpp>

Include dependency graph for prosplign.cpp:

Go to the source code of this file.

Classes
class	CProSplign::CImplementation
class	COneStage
class	CTwoStage
class	CTwoStageOld
class	CTwoStageNew
class	CIntronless
class	CIntronlessOld
class	CIntronlessNew
Functions
	USING_SCOPE (ncbi::objects)
	USING_SCOPE (ncbi::prosplign)
bool	IsProteinSpanWhole (const CSpliced_seg &sps)
	true if first and last aa are aligned, nothing about inside holes

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Function Documentation

bool @0::IsProteinSpanWhole (  const CSpliced_seg &  sps  )  [static]

true if first and last aa are aligned, nothing about inside holes Definition at line 828 of file prosplign.cpp. References CProt_pos_Base::GetAmin(), CSpliced_seg_Base::GetExons(), CProt_pos_Base::GetFrame(), and CSpliced_seg_Base::GetProduct_length(). Referenced by CProSplign::CImplementation::FindGlobalAlignment_stage2().

USING_SCOPE (  ncbi::prosplign   )

USING_SCOPE (  ncbi::objects   )

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