src/algo/ms/omssa/omssaapp.hpp File Reference

#include <string>
#include <corelib/ncbiargs.hpp>
#include <corelib/ncbiapp.hpp>
#include <corelib/ncbienv.hpp>
#include <corelib/ncbistre.hpp>
#include <corelib/ncbidiag.hpp>
#include <serial/serial.hpp>
#include <serial/objistrasn.hpp>
#include <serial/objistrasnb.hpp>
#include <serial/objostrasn.hpp>
#include <serial/objostrasnb.hpp>
#include <serial/iterator.hpp>
#include <objects/omssa/omssa__.hpp>
#include "omssa.hpp"

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Classes
class	COMSSABase
Functions
template<class T>
void	InsertList (const string &Input, T &ToInsert, string error)
	template for inserting elements of comma delimited string of ints into a list
template<class T>
void	InsertListString (const string &Input, T &ToInsert, string error)
	template for inserting elements of comma delimited string of strings into a list
Variables
char const *const	kIonLabels [eMSIonType_max]
	some friendly names for ion series

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Function Documentation

template<class T> void InsertList (  const string &  Input, T &  ToInsert, string  error )

template for inserting elements of comma delimited string of ints into a list Parameters: T  type of list List  the comma delimited string ToInsert  the list error  error output Definition at line 212 of file omssaapp.hpp. References NStr::Split(), and NStr::StringToInt(). Referenced by COMSSABase::SetSearchSettings().

template<class T> void InsertListString (  const string &  Input, T &  ToInsert, string  error )

template for inserting elements of comma delimited string of strings into a list Parameters: T  type of list List  the comma delimited string ToInsert  the list error  error output Definition at line 245 of file omssaapp.hpp. References NStr::Split().

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Variable Documentation

char const* const kIonLabels[eMSIonType_max]

Initial value: { "a", "b", "c", "x", "y", "z", "p", "n", "i", "u" } some friendly names for ion series Definition at line 189 of file omssaapp.hpp. Referenced by COMSSABase::PrintIons().

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