src/algo/blast/api/objmgr_query_data.cpp File Reference

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Detailed Description

NOTE: This file contains work in progress and the APIs are likely to change, please do not rely on them until this notice is removed.

Definition in file objmgr_query_data.cpp.

#include <ncbi_pch.hpp>
#include <corelib/ncbi_limits.hpp>
#include <algo/blast/api/objmgr_query_data.hpp>
#include <algo/blast/api/blast_options.hpp>
#include <objmgr/util/sequence.hpp>
#include "blast_setup.hpp"
#include "blast_objmgr_priv.hpp"
#include <algo/blast/api/seqinfosrc_seqdb.hpp>
#include "blast_seqalign.hpp"

Include dependency graph for objmgr_query_data.cpp:

Go to the source code of this file.

Classes
class	CObjMgr_LocalQueryData
	Provides access (not ownership) to the C structures used to configure local BLAST search class implementations. More...
class	CObjMgr_RemoteQueryData
Functions
	USING_SCOPE (objects)
static CRef< CBioseq_set >	s_QueryVectorToBioseqSet (const CBlastQueryVector &queries)
	Produces a BioseqSet from a CBlastQueryVector.
static CRef< CBioseq_set >	s_TSeqLocVectorToBioseqSet (const TSeqLocVector *queries)
	Produces a BioseqSet from a TSeqLocVector.
static IRemoteQueryData::TSeqLocs	s_TSeqLocVectorToTSeqLocs (const TSeqLocVector *queries)
	Produces a vector of SeqLocs from a TSeqLocVector.
static IRemoteQueryData::TSeqLocs	s_QueryVectorToTSeqLocs (const CBlastQueryVector &queries)
	Produces a vector of SeqLocs from a CBlastQueryVector.
static EBlastProgramType	s_GuessProgram (CConstRef< CSeq_loc > mask)
	Auxiliary function to help guess the program type from a CSeq-loc.
Variables
static char const	rcsid []

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Variable Documentation

char const rcsid[] [static]

Initial value: "$Id: objmgr_query_data.cpp 165646 2009-07-13 18:17:54Z maning $" Definition at line 2 of file objmgr_query_data.cpp.

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