src/algo/align/nw/nw_spliced_aligner32.cpp File Reference

#include <ncbi_pch.hpp>
#include "messages.hpp"
#include <algo/align/nw/nw_spliced_aligner32.hpp>
#include <algo/align/nw/align_exception.hpp>

Include dependency graph for nw_spliced_aligner32.cpp:

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Classes
class	CDonorAcceptorMatrix
Variables
const unsigned char	g_nwspl32_donor [splice_type_count_32][2]
const unsigned char	g_nwspl32_acceptor [splice_type_count_32][2]
const Uint4	kTypeDiag = 0x00000000
const Uint4	kTypeGap = 0x40000000
const Uint4	kTypeIntron = 0x80000000
CDonorAcceptorMatrix	g_dnr_acc_matrix

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Variable Documentation

CDonorAcceptorMatrix g_dnr_acc_matrix [static]

Definition at line 109 of file nw_spliced_aligner32.cpp.

const unsigned char g_nwspl32_acceptor[splice_type_count_32][2]

Initial value: { {'A','G'}, {'A','G'}, {'A','C'} } Definition at line 48 of file nw_spliced_aligner32.cpp.

const unsigned char g_nwspl32_donor[splice_type_count_32][2]

Initial value: { {'G','T'}, {'G','C'}, {'A','T'} } Definition at line 42 of file nw_spliced_aligner32.cpp.

const Uint4 kTypeDiag = 0x00000000

Definition at line 57 of file nw_spliced_aligner32.cpp. Referenced by CSplicedAligner32::x_DoBackTrace().

const Uint4 kTypeGap = 0x40000000

Definition at line 58 of file nw_spliced_aligner32.cpp.

const Uint4 kTypeIntron = 0x80000000

Definition at line 59 of file nw_spliced_aligner32.cpp. Referenced by CSplicedAligner32::x_DoBackTrace().

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