src/algo/align/nw/nw_aligner.cpp File Reference

#include <ncbi_pch.hpp>
#include "nw_aligner_threads.hpp"
#include "messages.hpp"
#include <corelib/ncbi_system.hpp>
#include <algo/align/nw/align_exception.hpp>
#include <objects/seqloc/Seq_id.hpp>
#include <objects/seqalign/Dense_seg.hpp>
#include <algorithm>

Include dependency graph for nw_aligner.cpp:

Go to the source code of this file.

Classes
struct	nwaln_mrnaseg
	naive pattern generator (a la Rabin-Karp) More...
struct	nwaln_mrnaguide
Functions
	USING_SCOPE (objects)
Variables
const unsigned char	kMaskFc = 0x01
const unsigned char	kMaskEc = 0x02
const unsigned char	kMaskE = 0x04
const unsigned char	kMaskD = 0x08

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Function Documentation

USING_SCOPE (  objects   )

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Variable Documentation

const unsigned char kMaskD = 0x08

Definition at line 195 of file nw_aligner.cpp.

const unsigned char kMaskE = 0x04

Definition at line 194 of file nw_aligner.cpp.

const unsigned char kMaskEc = 0x02

Definition at line 193 of file nw_aligner.cpp.

const unsigned char kMaskFc = 0x01

Definition at line 192 of file nw_aligner.cpp.

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