src/algo/align/nw/mm_aligner.cpp File Reference

#include <ncbi_pch.hpp>
#include "mm_aligner_threads.hpp"
#include <corelib/ncbimtx.hpp>
#include <algo/align/nw/align_exception.hpp>

Include dependency graph for mm_aligner.cpp:

Go to the source code of this file.

Functions
	DEFINE_STATIC_FAST_MUTEX (masterlist_mutex)
Variables
const unsigned char	kMaskFc = 0x0001
const unsigned char	kMaskEc = 0x0002
const unsigned char	kMaskE = 0x0004
const unsigned char	kMaskD = 0x0008

---

Function Documentation

DEFINE_STATIC_FAST_MUTEX (  masterlist_mutex   )

---

Variable Documentation

const unsigned char kMaskD = 0x0008

Definition at line 109 of file mm_aligner.cpp. Referenced by CBandAligner::x_DoBackTrace(), CNWAligner::x_DoBackTrace(), and CMMAligner::x_ExtendSubpath().

const unsigned char kMaskE = 0x0004

Definition at line 108 of file mm_aligner.cpp. Referenced by CNWAligner::x_Align(), CBandAligner::x_DoBackTrace(), CNWAligner::x_DoBackTrace(), CMMAligner::x_DoSubmatrix(), CMMAligner::x_ExtendSubpath(), and CMMAligner::x_RunTerm().

const unsigned char kMaskEc = 0x0002

Definition at line 107 of file mm_aligner.cpp. Referenced by CNWAligner::x_Align(), CBandAligner::x_DoBackTrace(), CNWAligner::x_DoBackTrace(), CMMAligner::x_DoSubmatrix(), CMMAligner::x_ExtendSubpath(), and CMMAligner::x_RunTerm().

const unsigned char kMaskFc = 0x0001

Definition at line 106 of file mm_aligner.cpp. Referenced by CBandAligner::x_DoBackTrace(), CNWAligner::x_DoBackTrace(), and CMMAligner::x_DoSubmatrix().

---