src/algo/blast/api/local_db_adapter.cpp File Reference

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Detailed Description

Defines class which provides internal BLAST database representations to the internal BLAST APIs.

Definition in file local_db_adapter.cpp.

#include <ncbi_pch.hpp>
#include <algo/blast/api/local_db_adapter.hpp>
#include <algo/blast/api/objmgr_query_data.hpp>
#include <algo/blast/api/seqsrc_seqdb.hpp>
#include <algo/blast/api/seqinfosrc_seqdb.hpp>
#include <algo/blast/api/seqinfosrc_seqvec.hpp>
#include "seqsrc_query_factory.hpp"
#include "psiblast_aux_priv.hpp"
#include "seqinfosrc_bioseq.hpp"

Include dependency graph for local_db_adapter.cpp:

Go to the source code of this file.

Functions
static void	s_CheckForBlastSeqSrcErrors (const BlastSeqSrc *seqsrc)
	Checks if the BlastSeqSrc initialization succeeded Exceptions: CBlastException  if BlastSeqSrc initialization failed.
static CRef< CSeqDbSeqInfoSrc >	s_InitCSeqDbSeqInfoSrc (CRef< CSeqDB > dbhandle, int filtering_algorithm)
Variables
static char const	rcsid []

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Variable Documentation

char const rcsid[] [static]

Initial value: "$Id: local_db_adapter.cpp 170772 2009-09-16 18:00:03Z camacho $" Definition at line 2 of file local_db_adapter.cpp.

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