NCBI C++ ToolKit: src/algo/phy_tree/lex.newick.cpp File Reference

yytext_ptr = yy_bp; \
    yyleng = (int) (yy_cp - yy_bp); \
    yy_hold_char = *yy_cp; \
    *yy_cp = '\0'; \
    yy_c_buf_p = yy_cp;

{ \
    result = CStreamUtils::Readsome(*g_NewickIstr, buf, max_size); \
    if (result == 0 && !*g_NewickIstr) { \
        result = YY_NULL; \
    } \
}

do \
        { \
        /* Undo effects of setting up yytext. */ \
        yytext[yyleng] = yy_hold_char; \
        yy_c_buf_p = yytext + n; \
        yy_hold_char = *yy_c_buf_p; \
        *yy_c_buf_p = '\0'; \
        yyleng = n; \
        } \
    while ( 0 )

do \
        { \
        /* Undo effects of setting up yytext. */ \
        *yy_cp = yy_hold_char; \
        YY_RESTORE_YY_MORE_OFFSET \
        yy_c_buf_p = yy_cp = yy_bp + n - YY_MORE_ADJ; \
        YY_DO_BEFORE_ACTION; /* set up yytext again */ \
        } \
    while ( 0 )

    {   0,
        4,    4,    4,    4,    8,    3,    2,    2,    6,    6,
        5,    3,    3,    1,    3,    0,    4,    3,    1,    1,
        3,    0,    3,    1,    0
    }

    {   0,
        0,    0,    5,    0,   29,    0,   30,   30,   24,   30,
       30,    7,   19,   16,    0,   21,   20,    0,    0,   13,
       10,   18,   13,    0,   30,   16,   18
    }

    {   0,
        1,    1,    1,    1,    1,    1,    1,    1,    1,    1,
        3,    3,    3,   12,   12,   21,   26,   21,   27,   27,
       23,   22,   20,   17,   16,   14,   13,    9,    5,   25,
       25,   25,   25,   25,   25,   25,   25,   25,   25,   25
    }

    {   0,
       25,    1,    1,    3,   25,   26,   25,   25,   27,   25,
       25,   26,   26,   12,   26,   27,   25,   13,   14,   13,
       13,   27,   13,   23,    0,   25,   25
    }

    {   0,
        1,    2,    2,    2,    2,    1,    1,    1,    2,    1
    }

    {   0,
        6,    7,    8,    9,   10,    6,    6,    6,   11,    6,
       12,   13,   14,   18,   19,   23,   15,   24,   16,   16,
       24,   17,   21,   22,   17,   21,   20,   17,   25,    5,
       25,   25,   25,   25,   25,   25,   25,   25,   25,   25
    }


Classes
struct	yy_buffer_state
Defines
#define	yy_create_buffer newick_create_buffer
#define	yy_delete_buffer newick_delete_buffer
#define	yy_scan_buffer newick_scan_buffer
#define	yy_scan_string newick_scan_string
#define	yy_scan_bytes newick_scan_bytes
#define	yy_flex_debug newick_flex_debug
#define	yy_init_buffer newick_init_buffer
#define	yy_flush_buffer newick_flush_buffer
#define	yy_load_buffer_state newick_load_buffer_state
#define	yy_switch_to_buffer newick_switch_to_buffer
#define	yyin newickin
#define	yyleng newickleng
#define	yylex newicklex
#define	yyout newickout
#define	yyrestart newickrestart
#define	yytext newicktext
#define	FLEX_SCANNER
#define	YY_FLEX_MAJOR_VERSION 2
#define	YY_FLEX_MINOR_VERSION 5
#define	yyconst
#define	YY_PROTO(proto) ()
#define	YY_NULL 0
#define	YY_SC_TO_UI(c) ((unsigned int) (unsigned char) c)
#define	BEGIN yy_start = 1 + 2 *
#define	YY_START ((yy_start - 1) / 2)
#define	YYSTATE YY_START
#define	YY_STATE_EOF(state) (YY_END_OF_BUFFER + state + 1)
#define	YY_NEW_FILE yyrestart( yyin )
#define	YY_END_OF_BUFFER_CHAR 0
#define	YY_BUF_SIZE 16384
#define	EOB_ACT_CONTINUE_SCAN 0
#define	EOB_ACT_END_OF_FILE 1
#define	EOB_ACT_LAST_MATCH 2
#define	yyless(n)
#define	unput(c) yyunput( c, yytext_ptr )
#define	YY_BUFFER_NEW 0
#define	YY_BUFFER_NORMAL 1
#define	YY_BUFFER_EOF_PENDING 2
#define	YY_CURRENT_BUFFER yy_current_buffer
#define	YY_FLUSH_BUFFER yy_flush_buffer( yy_current_buffer )
#define	yy_new_buffer yy_create_buffer
#define	yy_set_interactive(is_interactive)
#define	yy_set_bol(at_bol)
#define	YY_AT_BOL() (yy_current_buffer->yy_at_bol)
#define	yywrap() 1
#define	YY_SKIP_YYWRAP
#define	yytext_ptr yytext
#define	YY_DO_BEFORE_ACTION
#define	YY_NUM_RULES 7
#define	YY_END_OF_BUFFER 8
#define	REJECT reject_used_but_not_detected
#define	yymore() yymore_used_but_not_detected
#define	YY_MORE_ADJ 0
#define	YY_RESTORE_YY_MORE_OFFSET
#define	INITIAL 0
#define	YY_NO_UNPUT 1
#define	YY_INPUT(buf, result, max_size)
#define	YY_NEVER_INTERACTIVE 1
#define	EXPECT_NUM 1
#define	YY_NO_PUSH_STATE 1
#define	YY_NO_POP_STATE 1
#define	YY_NO_TOP_STATE 1
#define	YY_READ_BUF_SIZE 8192
#define	ECHO (void) fwrite( yytext, yyleng, 1, yyout )
#define	yyterminate() return YY_NULL
#define	YY_START_STACK_INCR 25
#define	YY_FATAL_ERROR(msg) yy_fatal_error( msg )
#define	YY_DECL int yylex YY_PROTO(( void ))
#define	YY_BREAK break;
#define	YY_RULE_SETUP YY_USER_ACTION
#define	YY_EXIT_FAILURE 2
#define	yyless(n)
Typedefs
typedef yy_buffer_state *	YY_BUFFER_STATE
typedef unsigned int	yy_size_t
typedef unsigned char	YY_CHAR
typedef int	yy_state_type
Functions
void	newickrestart ()
void	newick_switch_to_buffer ()
void	newick_load_buffer_state ()
YY_BUFFER_STATE	newick_create_buffer ()
void	newick_delete_buffer ()
void	newick_init_buffer ()
void	newick_flush_buffer ()
YY_BUFFER_STATE	newick_scan_buffer ()
YY_BUFFER_STATE	newick_scan_string ()
YY_BUFFER_STATE	newick_scan_bytes ()
static void *	yy_flex_alloc ()
static void *	yy_flex_realloc ()
static void	yy_flex_free ()
static yy_state_type	yy_get_previous_state ()
static yy_state_type	yy_try_NUL_trans ()
static int	yy_get_next_buffer ()
static void	yy_fatal_error ()
	USING_SCOPE (ncbi)
static int	input ()
int	newicklex ()
static yy_state_type	yy_try_NUL_trans (yy_current_state) yy_state_type yy_current_state
Variables
int	newickleng
FILE *	newickin
FILE *	newickout
static YY_BUFFER_STATE	yy_current_buffer = 0
static char	yy_hold_char
static int	yy_n_chars
int	newickleng
static char *	yy_c_buf_p = (char *) 0
static int	yy_init = 1
static int	yy_start = 0
static int	yy_did_buffer_switch_on_eof
FILE *	newickin = (FILE *) 0
FILE *	newickout = (FILE *) 0
char *	newicktext
static short int	yy_accept [26]
static int	yy_ec [256]
static int	yy_meta [11]
static short int	yy_base [28]
static short int	yy_def [28]
static short int	yy_nxt [41]
static short int	yy_chk [41]
static yy_state_type	yy_last_accepting_state
static char *	yy_last_accepting_cpos
char *	newicktext
static string	g_Buffer
CNcbiIstream *	g_NewickIstr
int	size
FILE *	file
yy_size_t	size
int	len
yy_size_t	size

src/algo/phy_tree/lex.newick.cpp File Reference

Classes

Defines

Typedefs

Functions

Variables

Define Documentation

Typedef Documentation

Function Documentation

Variable Documentation