Here is a list of all file members with links to the files they belong to:

- r -

• R_WRAP : set.hpp, map.hpp
• R_WRAP_VOID : set.hpp, map.hpp
• ra0 : miscmath.c
• ra1 : miscmath.c
• ra2 : miscmath.c
• ra3 : miscmath.c
• ra4 : miscmath.c
• ra5 : miscmath.c
• ra6 : miscmath.c
• ra7 : miscmath.c
• RadToDegrees() : opengl_renderer.cpp
• RaiseLogWindow() : nowin_main.cpp, cn3d_tools.hpp, cn3d_app.cpp
• Rand01() : thrdrsmp.c, thrddecl.h
• randGenerator : thrdzsc.cpp
• random_minmax() : stress.cpp
• RandomNum() : thrdzsc.cpp
• RandomSeed() : thrdzsc.cpp
• RANGE : query_parser_bison.tab.c
• range1 : seq_map_switch.cpp
• range2 : seq_map_switch.cpp
• RangeMap : RefinerDefs.hpp
• RangeRandomFillTest() : stress.cpp
• Ranges : RefinerDefs.hpp
• rank_errors() : error.c
• RAW_SCORE : cuGlobalDefs.hpp
• rb0 : miscmath.c
• rb1 : miscmath.c
• rb2 : miscmath.c
• rb3 : miscmath.c
• rb4 : miscmath.c
• rb5 : miscmath.c
• rb6 : miscmath.c
• rbEnd : bzip2recover.c
• rbStart : bzip2recover.c
• rcsid : mask_writer_seqloc.cpp, mask_writer_int.cpp, mask_writer_fasta.cpp, mask_writer_blastdb_maskinfo.cpp, mask_writer.cpp, mask_fasta_reader.cpp, mask_cmdline_args.cpp, mask_bdb_reader.cpp, remote_blastdb_adapter.cpp, local_blastdb_adapter.cpp, cached_sequence.cpp, bdbloader_rmt.cpp, bdbloader.cpp, writedb_volume.cpp, writedb_isam.cpp, writedb_impl.cpp, writedb_gimask.cpp, writedb_general.cpp, writedb_files.cpp, writedb_convert.cpp, writedb_column.cpp, writedb.cpp, taxid_set.cpp, multisource_util.cpp, mask_info_registry.cpp, build_db.cpp, seqdbvolset.cpp, seqdbvol.cpp, seqdbtax.cpp, seqdboidlist.cpp, seqdbobj.cpp, seqdbisam.cpp, seqdbimpl.cpp, seqdbgimask.cpp, seqdbgilistset.cpp, seqdbfilter.cpp, seqdbfile.cpp, seqdbexpert.cpp, seqdbcommon.cpp, seqdbcol.cpp, seqdbblob.cpp, seqdbbitset.cpp, seqdbatlas.cpp, seqdbalias.cpp, seqdb.cpp, gene_info_writer.cpp, gene_info_reader.cpp, gene_info.cpp, file_utils.cpp, seq_writer.cpp, blastdb_formatter.cpp, blastdb_dataextract.cpp, vectorscreen.cpp, tabular.cpp, showdefline.cpp, showalign.cpp, seqalignfilter.cpp, aln_printer.cpp, align_format_util.cpp, makeblastdb.cpp, blastdbcmd.cpp, blastdb_aux.cpp, blastdb_aliastool.cpp, tblastx_app.cpp, tblastn_app.cpp, rpstblastn_app.cpp, rpsblast_app.cpp, psiblast_app.cpp, blastx_app.cpp, blastp_app.cpp, blastn_app.cpp, blast_formatter.cpp, blast_app_util.cpp, tree.cpp, traceback.cpp, seqalign.cpp, seq.cpp, seg.cpp, rps.cpp, resfreq.cpp, prog.cpp, phi.cpp, patterns.cpp, options.cpp, hitlist.cpp, hit.cpp, dist.cpp, cobalt_app.cpp, cobalt.cpp, blast.cpp, data4xmlformat.cpp, blastxml_format.cpp, blastfmtutil.cpp, blast_format.cpp, split_query.c, phi_lookup.c, phi_gapalign.c, phi_extend.c, pattern.c, ncbi_std.c, ncbi_math.c, na_ungapped.c, matrix_freq_ratios.c, lookup_wrap.c, lookup_util.c, link_hsps.c, hspfilter_culling.c, hspfilter_collector.c, hspfilter_besthit.c, greedy_align.c, gencode_singleton.c, gapinfo.c, blast_util.c, blast_tune.c, blast_traceback.c, blast_sw.c, blast_stat.c, blast_setup.c, blast_seqsrc.c, blast_seg.c, blast_query_info.c, blast_psi_priv.c, blast_psi.c, blast_program.c, blast_posit.c, blast_parameters.c, blast_options.c, blast_nascan.c, blast_nalookup.c, blast_message.c, blast_lookup.c, blast_kappa.c, blast_itree.c, blast_hspstream.c, blast_hits.c, blast_gapalign.c, blast_filter.c, blast_extend.c, blast_engine.c, blast_encoding.c, blast_dynarray.c, blast_diagnostics.c, blast_aascan.c, blast_aalookup.c, aa_ungapped.c, unified_pvalues.c, smith_waterman.c, redo_alignment.c, optimize_target_freq.c, nlm_linear_algebra.c, matrix_frequency_data.c, composition_adjustment.c, compo_mode_condition.c, compo_heap.c, tblastx_args.cpp, tblastn_args.cpp, rpstblastn_args.cpp, rpsblast_args.cpp, psiblast_args.cpp, blastinput_demo.cpp, cmdline_flags.cpp, blastx_args.cpp, blastp_args.cpp, blastn_args.cpp, blast_scope_src.cpp, blast_input_aux.cpp, blast_input.cpp, blast_fasta_input.cpp, blast_args.cpp, winmask_filter.cpp, uniform_search.cpp, traceback_stage.cpp, split_query_cxx.cpp, split_query_blk.cpp, split_query_aux_priv.cpp, setup_factory.cpp, seqinfosrc_seqvec.cpp, seqinfosrc_seqdb.cpp, seqinfosrc_bioseq.cpp, rps_aux.cpp, repeats_filter_cxx.cpp, remote_search.cpp, query_data.cpp, pssm_engine.cpp, psiblast_iteration.cpp, psiblast_impl.cpp, psiblast_aux_priv.cpp, psiblast.cpp, psibl2seq.cpp, psi_pssm_input.cpp, prelim_stage.cpp, objmgrfree_query_data.cpp, objmgr_query_data.cpp, msa_pssm_input.cpp, local_search.cpp, local_db_adapter.cpp, local_blast.cpp, dust_filter.cpp, blast_setup_cxx.cpp, blast_results.cpp, blast_options_local_priv.cpp, blast_options_cxx.cpp, blast_objmgr_tools.cpp, blast_mtlock.cpp, blast_aux_priv.cpp, bioseq_extract_data_priv.cpp
• rcsid_bkpublic_h : bkpublic.h
• rcsid_cspublic_h : cspublic.h
• rcsid_cstypes_h : cstypes.h
• rcsid_ctlib_h : ctlib.h
• rcsid_ctpublic_h : ctpublic.h
• rcsid_sqldb_h : sqldb.h
• rcsid_sqlfront_h : sqlfront.h
• rcsid_sybdb_h : sybdb.h
• rcsid_syberror_h : syberror.h
• rcsid_sybfront_h : sybfront.h
• rcsid_tds_h : tds.h
• rcsid_tds_sysdep_private_h : tds_sysdep_private.h
• rcsid_tds_sysdep_public_h : tds_sysdep_public.h
• rcsid_tdsconvert_h : tdsconvert.h
• rcsid_tdssrv_h : tdssrv.h
• rcsid_tdsver_h : tdsver.h
• Rcx_Ptl : thrdatd.h
• Read() : serial.cpp, serial.hpp
• READ_AHEAD : alexer.cpp
• read_and_convert() : read.c
• read_buf() : deflate.c
• read_repeat_counts() : pcre_compile.c
• read_size() : reader_snp.cpp
• read_unsigned() : reader_snp.cpp
• ReadAlignmentFile() : alnread.c, alnread.h
• ReadAlignmentFileEx() : alnread.c, alnread.h
• readASN() : gnomon_model.cpp
• ReadAsn() : asnio.cpp
• ReadASNFromFile() : asniotest.cpp, asn_reader.hpp, struct_util_demo.cpp, cuCdReadWriteASN.hpp
• ReadASNFromIstream() : cav_asnio.hpp
• ReadASNFromStream() : cuCdReadWriteASN.hpp
• ReadBlock() : test.cpp
• ReadBytes() : test.cpp
• ReadCD() : struct_util_demo.cpp, bma_refiner.cpp
• ReadCgiCookies() : cgi_serial.cpp, cgi_serial.hpp
• ReadClassRandomContentsBegin : objistrimpl.hpp
• ReadClassRandomContentsEnd : objistrimpl.hpp
• ReadClassRandomContentsMember : objistrimpl.hpp
• ReadClassSequentialContentsBegin : objistrimpl.hpp
• ReadClassSequentialContentsEnd : objistrimpl.hpp
• ReadClassSequentialContentsMember : objistrimpl.hpp
• ReadCompartment() : splign_app.cpp
• ReadContainer() : cgi_serial.hpp
• readdirectory() : pcregrep.c
• ReadEntries : graph.h, fastme.h
• ReadEnvironment() : cgi_serial.cpp, cgi_serial.hpp
• readError() : bzip2recover.c
• ReadFasta() : fasta.cpp, nucprot.hpp, fasta.hpp
• ReadFastaFileMap() : fasta.cpp, fasta.hpp
• ReadFastaQueries() : cobalt_unit_test.hpp, cobalt_unit_test.cpp
• readGFF3() : gnomon_model.cpp
• readGFF3Gap() : gnomon_model.cpp
• readGnomon() : gnomon_model.cpp
• ReadId() : test.cpp
• ReadIndexHeader() : dbindex_sp.hpp
• ReadIndexHeader< false >() : dbindex.cpp
• ReadIndexHeader< true >() : dbindex.cpp
• ReadIntoUtf8() : ncbistre.cpp, ncbistre.hpp
• ReadLabel : graph.h, fastme.h
• ReadLine() : phrap.cpp
• ReadLocFromText() : cleanup_utils.hpp, cleanup_utils.cpp
• ReadMap() : map_rw_helper.hpp, cgi_serial.hpp
• ReadNewickTree() : newick.tab.cpp, phy_node.hpp
• ReadNucFa() : nucprot.hpp
• ReadNumber() : test.cpp
• ReadNumberOrRange() : ContextValidator.cpp
• ReadObject() : blast_test_util.hpp
• ReadOctetString() : test.cpp
• ReadOpenParenthesis : newick.h, graph.h, fastme.h
• readpassphrase : readpassphrase.c, readpassphrase.h, rename_freetds64.h
• ReadPhrap() : phrap.cpp, phrap.hpp
• ReadProject() : GBProjectHandle.cpp
• ReadProtFa() : nucprot.hpp
• ReadSequencesToBlast() : blast_input_aux.cpp, blast_input_aux.hpp
• ReadSingleLine() : file_messaging.cpp
• ReadSize : graph.h, fastme.h
• READSOCKET : tds_sysdep_private.h
• ReadStdSigned() : objistrasnb.cpp
• ReadStdUnsigned() : objistrasnb.cpp
• ReadString() : test.cpp
• ReadStringFromStream() : map_rw_helper.hpp, cgi_serial.hpp
• ReadStrWithLen() : remote_app.hpp
• ReadSubTree : graph.h, fastme.h
• ReadTextFile() : multisource_util.cpp, multisource_util.hpp
• ReadToRowOfEnergies() : cn3d_threader.cpp
• ReadValue() : test.cpp
• ReadWeight : graph.h, fastme.h
• ReadWord() : dbindex_sp.hpp
• REALBIND : sybdb.h
• realloc() : nc_memory.cpp
• RealScore() : compartments.cpp
• REBALANCE_REQUESTS_DEFAULT : netservice_params.hpp
• REBALANCE_TIME_DEFAULT : netservice_params.hpp
• REC_STACK_SAVE_MAX : pcre_exec.c
• RecoverSearchStrategy() : blast_app_util.hpp, blast_app_util.cpp
• redo_align_callbacks : blast_kappa.c
• redo_one_alignment_type : redo_alignment.h
• redundant() : bzip2.c
• Ref() : ncbiobj.hpp
• REFCHOICE_TYPE_METHOD : choiceptrstr.cpp
• RefChoiceInfo() : objectinfo.hpp
• RefineAlignment() : Info.hpp
• RefinedAlignments : RefinerDefs.hpp
• RefinedAlignmentsCIt : RefinerDefs.hpp
• RefinedAlignmentsIt : RefinerDefs.hpp
• RefinedAlignmentsRevCIt : RefinerDefs.hpp
• RefinedAlignmentsRevIt : RefinerDefs.hpp
• RefinedAlignmentsVT : RefinerDefs.hpp
• RefinementProgress() : alignment_manager.cpp
• REFINER_INVALID_SCORE : RefinerDefs.hpp
• refinerCallbackCounter : RefinerPhase.cpp, RefinerDefs.hpp
• RefinerResultCode : RefinerDefs.hpp
• RefinerRowSelectorCode : RefinerDefs.hpp
• RefinerRowSelectorCodeToStr() : bma_refiner.cpp
• REG : ncbi_core.h
• REG_AddRef() : ncbi_core.c, ncbi_core.h
• REG_ADVANCED_SECTION : cn3d_tools.hpp
• REG_ANIMATION_SECTION : cn3d_tools.hpp
• REG_ASSERT : pcreposix.h
• REG_BADBR : pcreposix.h
• REG_BADPAT : pcreposix.h
• REG_BADRPT : pcreposix.h
• REG_CACHE_ENABLED : cn3d_tools.hpp
• REG_CACHE_FOLDER : cn3d_tools.hpp
• REG_CACHE_MAX_SIZE : cn3d_tools.hpp
• REG_CACHE_SECTION : cn3d_tools.hpp
• REG_CDD_ANNOT_READONLY : cn3d_tools.hpp
• REG_CONFIG_SECTION : cn3d_tools.hpp
• REG_CONN_ARGS : ncbi_connutil.h
• REG_CONN_DEBUG_PRINTOUT : ncbi_connutil.h
• REG_CONN_DISPD_DISABLE : ncbi_connutil.h
• REG_CONN_FIREWALL : ncbi_connutil.h
• REG_CONN_HOST : ncbi_connutil.h
• REG_CONN_HTTP_PROXY_HOST : ncbi_connutil.h
• REG_CONN_HTTP_PROXY_PORT : ncbi_connutil.h
• REG_CONN_HTTP_REFERER : ncbi_connutil.h
• REG_CONN_HTTP_USER_HEADER : ncbi_connutil.h
• REG_CONN_LB_DISABLE : ncbi_connutil.h
• REG_CONN_LBSMD_DISABLE : ncbi_connutil.h
• REG_CONN_LOCAL_ENABLE : ncbi_connutil.h
• REG_CONN_LOCAL_SERVER : ncbi_connutil.h
• REG_CONN_LOCAL_SERVICES : ncbi_connutil.h
• REG_CONN_MAX_TRY : ncbi_connutil.h
• REG_CONN_PASS : ncbi_connutil.h
• REG_CONN_PATH : ncbi_connutil.h
• REG_CONN_PORT : ncbi_connutil.h
• REG_CONN_PROXY_HOST : ncbi_connutil.h
• REG_CONN_REQ_METHOD : ncbi_connutil.h
• REG_CONN_SCHEME : ncbi_connutil.h
• REG_CONN_SERVICE_NAME : ncbi_connutil.h
• REG_CONN_STATELESS : ncbi_connutil.h
• REG_CONN_TIMEOUT : ncbi_connutil.h
• REG_CONN_USER : ncbi_connutil.h
• REG_Create() : ncbi_core.c, ncbi_core.h
• REG_cxx2c() : ncbi_core_cxx.cpp, ncbi_core_cxx.hpp
• REG_Delete() : ncbi_core.c, ncbi_core.h
• REG_DOTALL : pcreposix.h
• REG_EBRACE : pcreposix.h
• REG_EBRACK : pcreposix.h
• REG_ECOLLATE : pcreposix.h
• REG_ECTYPE : pcreposix.h
• REG_EESCAPE : pcreposix.h
• REG_EMPTY : pcreposix.h
• REG_EPAREN : pcreposix.h
• REG_ERANGE : pcreposix.h
• REG_ERR_PREFIX : data_mining_service.cpp
• REG_ESIZE : pcreposix.h
• REG_ESPACE : pcreposix.h
• REG_ESUBREG : pcreposix.h
• REG_EXTENDED : pcreposix.h
• REG_FAVORITES_NAME : cn3d_tools.hpp
• REG_FONT_NATIVE_FONT_INFO : cn3d_tools.hpp
• REG_FOOTPRINT_RES : cn3d_tools.hpp
• REG_FRAME_DELAY : cn3d_tools.hpp
• REG_Get() : ncbi_core.c, ncbi_core.h
• REG_HIGHLIGHTS_ON : cn3d_tools.hpp
• REG_ICASE : pcreposix.h
• REG_INVARG : pcreposix.h
• REG_LOCK_READ : ncbi_core.c
• REG_LOCK_WRITE : ncbi_core.c
• REG_MAX_N_STRUCTS : cn3d_tools.hpp
• REG_MT_DIALOG_POS_X : cn3d_tools.hpp
• REG_MT_DIALOG_POS_Y : cn3d_tools.hpp
• REG_MT_DIALOG_SIZE_H : cn3d_tools.hpp
• REG_MT_DIALOG_SIZE_W : cn3d_tools.hpp
• REG_NEWLINE : pcreposix.h
• REG_NOMATCH : pcreposix.h
• REG_NOSUB : pcreposix.h
• REG_NOTBOL : pcreposix.h
• REG_NOTEMPTY : pcreposix.h
• REG_NOTEOL : pcreposix.h
• REG_OPENGL_FONT_SECTION : cn3d_tools.hpp
• REG_PROJECTION_TYPE : cn3d_tools.hpp
• REG_PROXIMAL_STEREO : cn3d_tools.hpp
• REG_QUALITY_ATOM_SLICES : cn3d_tools.hpp
• REG_QUALITY_ATOM_STACKS : cn3d_tools.hpp
• REG_QUALITY_BOND_SIDES : cn3d_tools.hpp
• REG_QUALITY_HELIX_SIDES : cn3d_tools.hpp
• REG_QUALITY_SECTION : cn3d_tools.hpp
• REG_QUALITY_WORM_SEGMENTS : cn3d_tools.hpp
• REG_QUALITY_WORM_SIDES : cn3d_tools.hpp
• REG_Reset() : ncbi_core.c, ncbi_core.h
• REG_ROW : sybdb.h
• REG_SEQUENCE_FONT_SECTION : cn3d_tools.hpp
• REG_Set() : ncbi_core.c, ncbi_core.h
• REG_SHOW_LOG_ON_START : cn3d_tools.hpp
• REG_SPIN_DELAY : cn3d_tools.hpp
• REG_SPIN_INCREMENT : cn3d_tools.hpp
• REG_STARTEND : pcreposix.h
• REG_STEREO_SEPARATION : cn3d_tools.hpp
• REG_UNLOCK : ncbi_core.c
• REG_UTF8 : pcreposix.h
• REG_VALID : ncbi_core.c
• REG_VALUE : ncbi_connutil.c
• regcomp() : pcreposix.h, pcreposix.c, pcreposix.h
• regerror() : pcreposix.h, pcreposix.c, pcreposix.h
• regexec() : pcreposix.h, pcreposix.c, pcreposix.h
• regfree() : pcreposix.h, pcreposix.c, pcreposix.h
• REGISTER : pcre_exec.c
• REGISTER_READER_ENTRY_POINTS : gbloader.cpp
• registered_CSeq_locTypeConverter : conv_seq_loc.cpp
• registered_Seq_alignFP : fingp_seqalign.cpp
• registered_Seq_FeatFP : fingp_seqfeat.cpp
• registered_Seq_graphFP : fingp_seqgraph.cpp
• registered_Seq_idFP : fingp_seqid.cpp
• registered_Seq_locFP : fingp_seqloc.cpp
• RegisterEntryPoint() : plugin_manager_store.hpp
• RegisterEnumTypeValuesObject() : serial.cpp, serialimpl.hpp
• RegisterMemoryChunk : ncbimempool.cpp
• RegisterMethods() : template_methods.cpp, simple_methods.cpp, quality_scoring_methods.cpp
• RegisterNcbiTestUserFunc() : test_boost.cpp, test_boost.hpp
• RegisterOMDataLoader() : blast_app_util.hpp, blast_app_util.cpp
• RegisterTooManyVariantsOfSameMaskingAlgorithm() : writedb_unit_test.cpp
• RegisterTypeInfoObject() : serial.cpp, serialimpl.hpp
• registry : cn3d_tools.cpp
• registryChanged : cn3d_tools.cpp
• registryFile : cn3d_tools.cpp
• RegistryGetBoolean() : cn3d_tools.hpp, cn3d_tools.cpp
• RegistryGetDouble() : cn3d_tools.hpp, cn3d_tools.cpp
• RegistryGetInteger() : cn3d_tools.hpp, cn3d_tools.cpp
• RegistryGetString() : cn3d_tools.hpp, cn3d_tools.cpp
• RegistryIsValidBoolean() : cn3d_tools.hpp, cn3d_tools.cpp
• RegistryIsValidDouble() : cn3d_tools.hpp, cn3d_tools.cpp
• RegistryIsValidInteger() : cn3d_tools.hpp, cn3d_tools.cpp
• RegistryIsValidString() : cn3d_tools.hpp, cn3d_tools.cpp
• RegistrySetBoolean() : cn3d_tools.hpp, cn3d_tools.cpp
• RegistrySetDouble() : cn3d_tools.hpp, cn3d_tools.cpp
• RegistrySetInteger() : cn3d_tools.hpp, cn3d_tools.cpp
• RegistrySetString() : cn3d_tools.hpp, cn3d_tools.cpp
• regoff_t : pcreposix.h
• reHeapElement() : NNI.cpp, heap.cpp, bNNI.cpp
• REJECT : lex.newick.cpp
• RELATION_PROPERTY_ENTRY : basic_converters.cpp, relation.hpp
• ReleaseSeqBlkFnPtr : blast_seqsrc_impl.h
• RemapAlignToLoc() : seq_align_util.cpp, Seq_align.cpp, seq_align_util.hpp, Seq_align.hpp
• RemapToQueryLoc() : blast_seqalign.cpp
• remasterAlignannot() : cuCD.cpp, cuCD.hpp
• ReMasterCdWithoutUnifiedBlocks() : cuCD.cpp, cuCD.hpp
• RemasterWithStructure() : cuCD.cpp, cuCD.hpp
• RemoteBlastDbLoader_ErrorHandler() : remote_blastdb_adapter.cpp
• RemoteFetchLongNucleotideBioseq() : rmt_dataloader_test.cpp
• REMOTEJOBCTL_VERSION_MAJOR : ns_remote_job_control.cpp
• REMOTEJOBCTL_VERSION_MINOR : ns_remote_job_control.cpp
• REMOTEJOBCTL_VERSION_PATCH : ns_remote_job_control.cpp
• remove_if() : chainer.hpp
• REMOVE_PRJ_DLG_DESCR : project_task.cpp
• REMOVE_PRJ_TEXT : project_task.cpp
• remove_xact() : xact.c, sybdb.h
• RemoveDeltaSeqGaps() : unit_test_validator.cpp
• RemoveDescriptorType() : unit_test_validator.cpp
• RemoveDupsNoSort() : cleanup_utils.hpp
• RemoveOverlaps() : compartments.cpp
• RemovePeriodFromEnd() : utils.hpp, utils.cpp
• RemoveSpaceBeforeAndAfterColon() : cleanup_biosource.cpp
• RemoveSpaces() : cleanup_utils.hpp, cleanup_utils.cpp
• RemoveSpacesBetweenTildes() : cleanup_utils.hpp, cleanup_utils.cpp
• RemoveTrailingJunk() : cleanup_utils.hpp, cleanup_utils.cpp
• RemoveTrailingPeriod() : cleanup_utils.hpp, cleanup_utils.cpp
• RemoveWhiteSpace() : cleanup_utils.cpp
• RemoveWhitespace_CJL() : cuReadFastaWrapper.cpp
• RENDERING_SHORTCUT : structure_window.cpp
• RenderRect() : text_sel_handler.cpp, linear_sel_handler.cpp
• ReNewtonSystemFree() : optimize_target_freq.c
• ReNewtonSystemNew() : optimize_target_freq.c
• Reorder() : cuCD.cpp, cuCD.hpp
• ReorderStructureAlignments() : cuCD.cpp, cuCD.hpp
• ReorderVector() : su_block_multiple_alignment.cpp
• REP_3_6 : trees.c
• rep_max : pcre_exec.c
• rep_min : pcre_exec.c
• REPEAT_MASK_LINK_VALUE : blast_filter.h
• REPEATS_SEARCH_EVALUE : blast_filter.h
• REPEATS_SEARCH_FILTER_STRING : blast_filter.h
• REPEATS_SEARCH_GAP_EXTEND : blast_filter.h
• REPEATS_SEARCH_GAP_OPEN : blast_filter.h
• REPEATS_SEARCH_PENALTY : blast_filter.h
• REPEATS_SEARCH_REWARD : blast_filter.h
• REPEATS_SEARCH_WORD_SIZE : blast_filter.h
• REPEATS_SEARCH_XDROP_FINAL : blast_filter.h
• REPEATS_SEARCH_XDROP_UNGAPPED : blast_filter.h
• REPLACE_BAD_CHARS_ALWAYS : objistrasnb.cpp
• REPLACE_BAD_CHARS_METHOD : objistrasnb.cpp
• replace_ns() : node_manip.cpp
• ReplaceExt() : em.cpp
• ReplaceVisibleChar() : objistr.cpp, objistr.hpp
• ReplaceVisibleCharMethod() : objistrasnb.cpp
• replay_save_context() : login.c
• REPORT_NORMAL : dbindex.hpp
• REPORT_QUIET : dbindex.hpp
• REPORT_VERBOSE : dbindex.hpp
• ReportConversionError() : value_convert_policy.hpp
• ReportTypeConvError() : dbapi_object_convert.cpp
• REPZ_11_138 : trees.c
• REPZ_3_10 : trees.c
• REQ_BYTE_MAX : pcre_internal.h
• REQ_CASELESS : pcre_internal.h
• REQ_NONE : pcre_internal.h
• REQ_UNSET : pcre_internal.h
• REQ_VARY : pcre_internal.h
• RequestStopWatchTlsCleanup() : ncbidiag.cpp
• RESERVED : zlib.cpp, gzio.c
• RESET_FIELD : sequence_macros.hpp
• reset_save_context() : login.c
• RESET_WITH_TINY_DISTANCE : cuSeqTreeAlg.hpp
• ResetChunkIteratorFnPtr : blast_seqsrc_impl.h
• ResetFields() : cuCD.cpp, cuCD.hpp
• ResetIndexAnyTypeChoice() : choicetype.cpp
• ResetOrgname() : unit_test_validator.cpp
• ResidualsLinearConstraints() : optimize_target_freq.c
• RESIDUE_ORDER : blastfmtutil.cpp
• ResidueGraphList : residue.hpp, molecule.hpp
• resize() : pythonpp_ext.hpp
• resize< 0 >() : pythonpp_ext.hpp
• ResizeDst() : sequtil_shared.hpp
• ResizeTest() : stress.cpp
• RESTORE : inflate.c, infback.c
• RestoreModel() : asn1.cpp
• RestoreModelAttributes() : asn1.cpp
• RestoreModelFromInternalGnomonFeature() : asn1.cpp
• RestoreModelFromPublicMrnaFeature() : asn1.cpp
• RestoreModelMethod() : asn1.cpp
• RestoreModelReadingFrame() : asn1.cpp
• RESTRICT_SIZE : blast_gapalign.c
• RESTRICTED_ALIGNMENT_WORST_EVALUE : blast_parameters.h
• RETCODE : sqltypes.h, sybdb.h
• RETHROW_TRACE : ncbiexpt.hpp
• RethrowError : objostr.hpp
• RetrieveGi555WithTimeOut() : bdbloader_unit_test.cpp
• RetrieveLargeNuclSequence() : bdbloader_unit_test.cpp
• RetrieveLargeProteinWithTimeOut() : bdbloader_unit_test.cpp
• RetrieveModuleFileName() : python_ncbi_dbapi.cpp
• RetrievePartsOfLargeChromosome() : bdbloader_unit_test.cpp
• RetrieveStatementType() : python_ncbi_dbapi.cpp
• RetrieveStdStrands() : align_shadow.cpp
• RETRY_DELAY_DEFAULT : netservice_params.hpp
• RETSIGTYPE : ncbiconf_xcode.h
• RETURN : decompress.c
• RETURN_FIRST_SEQID_THAT_ : su_sequence_set.cpp
• RETURN_LS : utf8.cpp
• RETURN_RESULT : ncbiexec.cpp
• RETURN_S : utf8.cpp
• rev_codons : gnomon_seq.cpp
• rev_ecodons : gnomon_seq.cpp
• revcmp() : sequtil_shared.hpp, sequtil_shared.cpp
• Reverse() : coutputformatter.cpp, Na_strand.hpp
• REVERSE : inflate.c
• reverse_4na : score_builder.cpp
• reverse_complement() : win_mask_gen_counts.cpp
• REVERSE_ITERATE : ncbimisc.hpp
• ReverseAndComplement() : em.cpp
• ReverseComplement() : coutputformatter.cpp, gnomon_seq.hpp, gnomon_seq.cpp
• RIGHT : fastme.h
• RIGHT_JUSTIFY : cav_alndisplay.cpp, sequence_viewer.cpp
• RigidBodyFit() : vector_math.hpp, vector_math.cpp
• RM1 : pcre_exec.c, thrdrsmp.c
• RM10 : pcre_exec.c
• RM11 : pcre_exec.c
• RM12 : pcre_exec.c
• RM13 : pcre_exec.c
• RM14 : pcre_exec.c
• RM15 : pcre_exec.c
• RM16 : pcre_exec.c
• RM17 : pcre_exec.c
• RM18 : pcre_exec.c
• RM19 : pcre_exec.c
• RM2 : pcre_exec.c, thrdrsmp.c
• RM20 : pcre_exec.c
• RM21 : pcre_exec.c
• RM22 : pcre_exec.c
• RM23 : pcre_exec.c
• RM24 : pcre_exec.c
• RM25 : pcre_exec.c
• RM26 : pcre_exec.c
• RM27 : pcre_exec.c
• RM28 : pcre_exec.c
• RM29 : pcre_exec.c
• RM3 : pcre_exec.c
• RM30 : pcre_exec.c
• RM31 : pcre_exec.c
• RM32 : pcre_exec.c
• RM33 : pcre_exec.c
• RM34 : pcre_exec.c
• RM35 : pcre_exec.c
• RM36 : pcre_exec.c
• RM37 : pcre_exec.c
• RM38 : pcre_exec.c
• RM39 : pcre_exec.c
• RM4 : pcre_exec.c
• RM40 : pcre_exec.c
• RM41 : pcre_exec.c
• RM42 : pcre_exec.c
• RM43 : pcre_exec.c
• RM44 : pcre_exec.c
• RM45 : pcre_exec.c
• RM46 : pcre_exec.c
• RM47 : pcre_exec.c
• RM48 : pcre_exec.c
• RM49 : pcre_exec.c
• RM5 : pcre_exec.c
• RM50 : pcre_exec.c
• RM51 : pcre_exec.c
• RM52 : pcre_exec.c
• RM53 : pcre_exec.c
• RM54 : pcre_exec.c
• RM6 : pcre_exec.c
• RM7 : pcre_exec.c
• RM8 : pcre_exec.c
• RM9 : pcre_exec.c
• RMATCH : pcre_exec.c
• RNA_INFO_PAIR : SeqFeatData.cpp
• RNAGEN_HAS_QUAL : sequence_macros.hpp
• RNAQSET_HAS_QUAL : sequence_macros.hpp
• Rnd_Smp : thrdatd.h
• Robinson_prob : blast_stat.c
• ROOM : infback.c
• rotl32 : md4.c
• round : align_shadow.hpp, gl_widget_base.hpp
• ROUND : wiggle_data.cpp
• Round() : cn3d_pssm.cpp, su_pssm.cpp
• rowComparisonFunction : sequence_display.cpp
• RowMembershipColor : cuSeqtree.hpp
• rpc_clear() : rpc.c, ct.c
• RPP_ECHO_OFF : readpassphrase.h
• RPP_ECHO_ON : readpassphrase.h
• RPP_FORCELOWER : readpassphrase.h
• RPP_FORCEUPPER : readpassphrase.h
• RPP_REQUIRE_TTY : readpassphrase.h
• RPP_SEVENBIT : readpassphrase.h
• RPP_STDIN : readpassphrase.h
• RPS_BUCKET_SIZE : blast_aalookup.h
• RPS_HITS_PER_CELL : blast_aalookup.h
• RPS_K_MULT : blast_traceback.c
• RPS_MAGIC_NUM : blast_rps.h
• RPS_MAGIC_NUM_28 : blast_rps.h
• RPSFillScores() : blast_stat.c
• RPSfindUngappedLambda() : blast_stat.c
• RPSLookupTableDestruct() : blast_aalookup.c, blast_aalookup.h
• RPSLookupTableNew() : blast_aalookup.c, blast_aalookup.h
• RPSPsiMatrixAttach() : blast_traceback.c, blast_gapalign_priv.h
• RPSPsiMatrixDetach() : blast_traceback.c, blast_gapalign_priv.h
• RPSRescalePssm() : blast_stat.c, blast_stat.h
• RREF_ANY : pcre_internal.h
• RRETURN : pcre_exec.c
• rsmp() : thrdrsmp.c, thrddecl.h
• rtrim() : bcp.c
• rulerColor() : cav_alndisplay.cpp
• RUN_TEST : asniotest.cpp
• RunIdler() : ncbiapp.cpp, ncbiapp.hpp
• RunMultipleProteinSearch() : uniform_search_unit_test.cpp
• RunNIterationsWithoutConverging() : psiblast_iteration_unit_test.cpp
• RunSearchFn : blast_dbindex.cpp
• RWLockFatal : ncbimtx.cpp
• RWSTREAMBUF_CATCH_ALL : rwstreambuf.cpp

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