state Class Reference

Search Toolkit Book for state

#include <sls_alp.hpp>

Collaboration diagram for state:

List of all members.

Public Member Functions
	state ()
Public Attributes
array< Int4 > *	d_cells_counts
Int4 *	d_HS_i_const_next
Int4 *	d_HI_i_const_next
Int4 *	d_HD_i_const_next
Int4 *	d_H_i_const_next
Int4 *	d_HS_j_const_next
Int4 *	d_HI_j_const_next
Int4 *	d_HD_j_const_next
Int4 *	d_H_j_const_next
Int4	d_HS_ij_next
Int4	d_HI_ij_next
Int4	d_HD_ij_next
Int4	d_H_ij_next
Int4	d_H_matr_len
Int4	d_M
Int4	d_sentinel_i_next
Int4	d_sentinel_j_next

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Detailed Description

Definition at line 59 of file sls_alp.hpp.

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Constructor & Destructor Documentation

state::state

(

)

Definition at line 1633 of file sls_alp.cpp.

References d_cells_counts, d_H_i_const_next, d_H_j_const_next, d_HD_i_const_next, d_HD_j_const_next, d_HI_i_const_next, d_HI_j_const_next, d_HS_i_const_next, and d_HS_j_const_next.

Referenced by CSDBAPI::UpdateMirror().

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Member Data Documentation

array<Int4>* state::d_cells_counts

Definition at line 65 of file sls_alp.hpp.

Referenced by alp::partially_release_memory(), alp::restore_state(), alp::save_state(), state(), and alp::~alp().

Int4* state::d_H_i_const_next

Definition at line 70 of file sls_alp.hpp.

Referenced by alp::partially_release_memory(), alp::restore_state(), alp::save_state(), state(), and alp::~alp().

Int4 state::d_H_ij_next

Definition at line 80 of file sls_alp.hpp.

Referenced by alp::restore_state(), and alp::save_state().

Int4* state::d_H_j_const_next

Definition at line 75 of file sls_alp.hpp.

Referenced by alp::partially_release_memory(), alp::restore_state(), alp::save_state(), state(), and alp::~alp().

Int4 state::d_H_matr_len

Definition at line 82 of file sls_alp.hpp.

Referenced by alp::partially_release_memory(), alp::restore_state(), alp::save_state(), and alp::~alp().

Int4* state::d_HD_i_const_next

Definition at line 69 of file sls_alp.hpp.

Referenced by alp::partially_release_memory(), alp::restore_state(), alp::save_state(), state(), and alp::~alp().

Int4 state::d_HD_ij_next

Definition at line 79 of file sls_alp.hpp.

Referenced by alp::restore_state(), and alp::save_state().

Int4* state::d_HD_j_const_next

Definition at line 74 of file sls_alp.hpp.

Referenced by alp::partially_release_memory(), alp::restore_state(), alp::save_state(), state(), and alp::~alp().

Int4* state::d_HI_i_const_next

Definition at line 68 of file sls_alp.hpp.

Referenced by alp::partially_release_memory(), alp::restore_state(), alp::save_state(), state(), and alp::~alp().

Int4 state::d_HI_ij_next

Definition at line 78 of file sls_alp.hpp.

Referenced by alp::restore_state(), and alp::save_state().

Int4* state::d_HI_j_const_next

Definition at line 73 of file sls_alp.hpp.

Referenced by alp::partially_release_memory(), alp::restore_state(), alp::save_state(), state(), and alp::~alp().

Int4* state::d_HS_i_const_next

Definition at line 67 of file sls_alp.hpp.

Referenced by alp::partially_release_memory(), alp::restore_state(), alp::save_state(), state(), and alp::~alp().

Int4 state::d_HS_ij_next

Definition at line 77 of file sls_alp.hpp.

Referenced by alp::restore_state(), and alp::save_state().

Int4* state::d_HS_j_const_next

Definition at line 72 of file sls_alp.hpp.

Referenced by alp::partially_release_memory(), alp::restore_state(), alp::save_state(), state(), and alp::~alp().

Int4 state::d_M

Definition at line 84 of file sls_alp.hpp.

Referenced by alp::restore_state(), and alp::save_state().

Int4 state::d_sentinel_i_next

Definition at line 86 of file sls_alp.hpp.

Referenced by alp::restore_state(), and alp::save_state().

Int4 state::d_sentinel_j_next

Definition at line 87 of file sls_alp.hpp.

Referenced by alp::restore_state(), and alp::save_state().

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The documentation for this class was generated from the following files:

• src/algo/blast/gumbel_params/sls_alp.hpp
• src/algo/blast/gumbel_params/sls_alp.cpp