#include <messenger.hpp>

Collaboration diagram for Messenger:

Public Types
typedef std::map< const MoleculeIdentifier *, std::vector< bool > >	MoleculeHighlightMap
Public Member Functions
void	PostRedrawSequenceViewer (ViewerBase *viewer)
void	PostRedrawAllSequenceViewers (void)
void	PostRedrawMolecule (const Molecule *molecule)
void	PostRedrawAllStructures (void)
void	UnPostRedrawAllSequenceViewers (void)
void	UnPostRedrawSequenceViewer (ViewerBase *viewer)
void	UnPostStructureRedraws (void)
void	ProcessRedraws (void)
void	SequenceWindowsSave (bool prompt)
void	NewSequenceViewerFont (void)
bool	IsHighlighted (const Molecule *molecule, int residueID) const
bool	IsHighlighted (const Sequence *sequence, unsigned int seqIndex) const
bool	IsHighlightedAnywhere (const MoleculeIdentifier *identifier) const
bool	IsHighlightedAnywhere (const Molecule *molecule) const
bool	RemoveAllHighlights (bool postRedraws)
void	AddHighlights (const Sequence *sequence, unsigned int seqIndexFrom, unsigned int seqIndexTo)
void	RemoveHighlights (const Sequence *sequence, unsigned int seqIndexFrom, unsigned int seqIndexTo)
void	ToggleHighlights (const Sequence *sequence, unsigned int seqIndexFrom, unsigned int seqIndexTo)
void	AddHighlights (const Molecule *molecule, int residueIDFrom, int residueIDTo, bool scrollViewersTo=false)
void	ToggleHighlight (const Molecule *molecule, int residueID, bool scrollViewersTo=false)
void	GetHighlights (MoleculeHighlightMap *copyHighlights)
void	SetHighlights (const MoleculeHighlightMap &newHighlights)
void	HighlightAndShowSequence (const Sequence *sequence)
void	KeepHighlightsOnlyOnSequence (const Sequence *sequence)
void	SuspendHighlighting (bool suspend)
void	CacheHighlights (void)
void	RestoreCachedHighlights (void)
	Messenger (void)
bool	IsAnythingHighlighted (void) const
bool	GetHighlightedResiduesWithStructure (MoleculeHighlightMap *residues) const
ncbi::objects::CBiostruc_annot_set *	CreateBiostrucAnnotSetForHighlightsOnSingleObject (void) const
bool	GetHighlightsForSelectionMessage (std::string *data) const
void	AddSequenceViewer (ViewerBase *sequenceViewer)
void	AddStructureWindow (StructureWindow *window)
void	RemoveStructureWindow (const StructureWindow *structureWindow)
void	RemoveSequenceViewer (const ViewerBase *sequenceViewer)
void	SetAllWindowTitles (void) const
bool	IsFileMessengerActive (void) const
void	FileMessengerSend (const std::string &toApp, const std::string &command, const std::string &data)
Private Types
typedef std::list< ViewerBase * >	SequenceViewerList
typedef std::map< const Molecule *, bool >	RedrawMoleculeList
typedef std::map< ViewerBase *, bool >	RedrawSequenceViewerList
Private Member Functions
bool	IsHighlighted (const MoleculeIdentifier *identifier, int index) const
void	ToggleHighlights (const MoleculeIdentifier identifier, unsigned int indexFrom, unsigned int indexTo, const StructureSet set)
void	RedrawMoleculesWithIdentifier (const MoleculeIdentifier identifier, const StructureSet set)
Private Attributes
SequenceViewerList	sequenceViewers
StructureWindow *	structureWindow
RedrawMoleculeList	redrawMolecules
RedrawSequenceViewerList	redrawSequenceViewers
bool	redrawAllStructures
bool	redrawAllSequenceViewers
bool	highlightingSuspended
MoleculeHighlightMap	highlights
MoleculeHighlightMap	highlightCache

Detailed Description

Definition at line 64 of file messenger.hpp.

Member Typedef Documentation

typedef std::map< const MoleculeIdentifier *, std::vector < bool > > Messenger::MoleculeHighlightMap

Definition at line 99 of file messenger.hpp.

typedef std::map< const Molecule *, bool > Messenger::RedrawMoleculeList [private]

Definition at line 148 of file messenger.hpp.

typedef std::map< ViewerBase *, bool > Messenger::RedrawSequenceViewerList [private]

Definition at line 150 of file messenger.hpp.

typedef std::list< ViewerBase * > Messenger::SequenceViewerList [private]

Definition at line 142 of file messenger.hpp.

Constructor & Destructor Documentation

Messenger::Messenger ( void ) [inline]

Definition at line 166 of file messenger.hpp.

Member Function Documentation

void Messenger::AddHighlights	(	const Sequence *	sequence,
		unsigned int	seqIndexFrom,
		unsigned int	seqIndexTo
	)

void Messenger::AddHighlights	(	const Molecule *	molecule,
		int	residueIDFrom,
		int	residueIDTo,
		bool	scrollViewersTo = `false`
	)

Definition at line 355 of file messenger.cpp.

References ERRORMSG, highlights, Molecule::identifier, if(), Molecule::NResidues(), and sequenceViewers.

void Messenger::AddSequenceViewer ( ViewerBase * sequenceViewer ) [inline]

Definition at line 182 of file messenger.hpp.

Referenced by AlignmentManager::Init().

void Messenger::AddStructureWindow ( StructureWindow * window ) [inline]

Definition at line 185 of file messenger.hpp.

Referenced by StructureWindow::StructureWindow().

void Messenger::CacheHighlights ( void )

Definition at line 412 of file messenger.cpp.

References highlightCache, and highlights.

Referenced by CommandProcessor::DoCommand_Highlight(), StructureWindow::LoadData(), and ViewerWindowBase::OnCacheHighlights().

CBiostruc_annot_set * Messenger::CreateBiostrucAnnotSetForHighlightsOnSingleObject ( void ) const

Definition at line 467 of file messenger.cpp.

References ERRORMSG, highlights, if(), IsAnythingHighlighted(), CRef< C, Locker >::Release(), CResidue_pntrs_Base::SetInterval(), CChem_graph_pntrs_Base::SetResidues(), and MoleculeIdentifier::VALUE_NOT_SET.

Referenced by CDDEvidenceDialog::GetData().

void Messenger::FileMessengerSend	(	const std::string &	toApp,
		const std::string &	command,
		const std::string &	data
	)

Definition at line 599 of file messenger.cpp.

References StructureWindow::SendCommand(), and structureWindow.

bool Messenger::GetHighlightedResiduesWithStructure ( MoleculeHighlightMap * residues ) const

Definition at line 453 of file messenger.cpp.

References highlights, and IsAnythingHighlighted().

Referenced by AnnotateDialog::AnnotateDialog().

void Messenger::GetHighlights ( MoleculeHighlightMap * copyHighlights )

Definition at line 424 of file messenger.cpp.

References highlights.

Referenced by CDDAnnotateDialog::HighlightMotif(), CDDAnnotateDialog::NewOrEditMotif(), and ViewerWindowBase::OnFindPattern().

bool Messenger::GetHighlightsForSelectionMessage ( std::string * data ) const

Definition at line 536 of file messenger.cpp.

References highlights, IsAnythingHighlighted(), SeqIdToIdentifier(), and WARNINGMSG.

void Messenger::HighlightAndShowSequence ( const Sequence * sequence )

Definition at line 267 of file messenger.cpp.

References AddHighlights(), Sequence::identifier, Sequence::Length(), RemoveAllHighlights(), and sequenceViewers.

Referenced by TaxonomyWindow::OnActivate().

bool Messenger::IsAnythingHighlighted ( void ) const [inline]

Definition at line 168 of file messenger.hpp.

Referenced by CreateBiostrucAnnotSetForHighlightsOnSingleObject(), GetHighlightedResiduesWithStructure(), GetHighlightsForSelectionMessage(), SequenceViewerWindow::OnHighlight(), and SuspendHighlighting().

bool Messenger::IsFileMessengerActive ( void ) const

Definition at line 594 of file messenger.cpp.

References StructureWindow::IsFileMessengerActive(), and structureWindow.

bool Messenger::IsHighlighted	(	const Molecule *	molecule,
		int	residueID
	)		const

Definition at line 216 of file messenger.cpp.

References Molecule::identifier.

Referenced by Residue::Draw(), StyleManager::GetAtomStyle(), StyleManager::GetBondStyle(), BlockMultipleAlignment::GetCharacterTraitsAt(), CDDAnnotateDialog::GetCurrentHighlightedIntervals(), IsHighlighted(), IsHighlightedAnywhere(), StructureSet::SelectByDistance(), StructureObject::SelectByDistance(), ShowHideManager::ShowDomainsWithHighlights(), and ShowHideManager::ShowSelectedResidues().

bool Messenger::IsHighlighted	(	const Sequence *	sequence,
		unsigned int	seqIndex
	)		const

Definition at line 221 of file messenger.cpp.

References Sequence::identifier, and IsHighlighted().

bool Messenger::IsHighlighted	(	const MoleculeIdentifier *	identifier,
		int	index
	)		const `[private]`

Definition at line 200 of file messenger.cpp.

References ERRORMSG, highlightingSuspended, and highlights.

bool Messenger::IsHighlightedAnywhere ( const MoleculeIdentifier * identifier ) const

Definition at line 226 of file messenger.cpp.

References IsHighlighted().

Referenced by CompareRowsFloatHighlights(), SequenceViewerWindow::OnRealign(), and CDDAnnotateDialog::ShowEvidence().

bool Messenger::IsHighlightedAnywhere ( const Molecule * molecule ) const

Definition at line 231 of file messenger.cpp.

References Molecule::identifier, and IsHighlighted().

void Messenger::KeepHighlightsOnlyOnSequence ( const Sequence * sequence )

Definition at line 277 of file messenger.cpp.

References ERRORMSG, highlights, Sequence::identifier, PostRedrawAllSequenceViewers(), and PostRedrawAllStructures().

Referenced by SequenceDisplay::MouseDown().

void Messenger::NewSequenceViewerFont ( void )

Definition at line 190 of file messenger.cpp.

References sequenceViewers.

Referenced by StructureWindow::OnSetFont().

void Messenger::PostRedrawAllSequenceViewers ( void )

void Messenger::PostRedrawAllStructures ( void )

void Messenger::PostRedrawMolecule ( const Molecule * molecule )

Definition at line 85 of file messenger.cpp.

References redrawAllStructures, and redrawMolecules.

Referenced by SequenceDisplay::MouseDown(), PostRedrawEntity(), SequenceDisplay::RedrawAlignedMolecules(), RedrawMoleculesWithIdentifier(), and ShowHideManager::ShowHideCallbackFunction().

void Messenger::PostRedrawSequenceViewer ( ViewerBase * viewer )

Definition at line 95 of file messenger.cpp.

References redrawAllSequenceViewers, and redrawSequenceViewers.

Referenced by SequenceViewer::CreateSequenceWindow(), UpdateViewer::CreateUpdateWindow(), SequenceDisplay::MouseDown(), ViewerWindowBase::OnJustification(), SequenceViewerWindow::OnMarkBlock(), ViewerWindowBase::OnShowGeomVltns(), and SequenceDisplay::UpdateBlockBoundaryRow().

void Messenger::ProcessRedraws ( void )

Definition at line 123 of file messenger.cpp.

References OpenGLRenderer::Construct(), map_checker< std::map< Key, T, Compare > >::end(), map_checker< std::map< Key, T, Compare > >::find(), StructureWindow::glCanvas, StructureObject::graph, OpenGLRenderer::NewView(), redrawAllSequenceViewers, redrawAllStructures, ChemicalGraph::RedrawMolecule(), redrawMolecules, redrawSequenceViewers, Cn3DGLCanvas::renderer, sequenceViewers, and structureWindow.

Referenced by Cn3DApp::OnIdle(), and CDDAnnotateDialog::ShowEvidence().

void Messenger::RedrawMoleculesWithIdentifier	(	const MoleculeIdentifier *	identifier,
		const StructureSet *	set
	)		`[private]`

Definition at line 236 of file messenger.cpp.

References set< Key, Compare >::begin(), and PostRedrawMolecule().

Referenced by AddHighlights(), RemoveAllHighlights(), RemoveHighlights(), SetHighlights(), and ToggleHighlights().

bool Messenger::RemoveAllHighlights ( bool postRedraws )

void Messenger::RemoveHighlights	(	const Sequence *	sequence,
		unsigned int	seqIndexFrom,
		unsigned int	seqIndexTo
	)

Definition at line 300 of file messenger.cpp.

References ERRORMSG, highlights, Sequence::identifier, Sequence::Length(), StructureBase::parentSet, PostRedrawAllSequenceViewers(), and RedrawMoleculesWithIdentifier().

void Messenger::RemoveSequenceViewer ( const ViewerBase * sequenceViewer )

Definition at line 174 of file messenger.cpp.

References sequenceViewers.

Referenced by AlignmentManager::~AlignmentManager().

void Messenger::RemoveStructureWindow ( const StructureWindow * structureWindow )

Definition at line 167 of file messenger.cpp.

References ERRORMSG, and structureWindow.

Referenced by StructureWindow::OnExit().

void Messenger::RestoreCachedHighlights ( void )

Definition at line 417 of file messenger.cpp.

References highlightCache, highlights, PostRedrawAllSequenceViewers(), and PostRedrawAllStructures().

Referenced by ViewerWindowBase::OnCacheHighlights().

void Messenger::SequenceWindowsSave ( bool prompt )

Definition at line 183 of file messenger.cpp.

References sequenceViewers.

Referenced by CommandProcessor::DoCommand_LoadFile(), StructureWindow::OnExit(), StructureWindow::OnOpen(), StructureWindow::OnSave(), and StructureSet::SaveASNData().

void Messenger::SetAllWindowTitles ( void ) const

Definition at line 586 of file messenger.cpp.

References sequenceViewers, StructureWindow::SetWindowTitle(), and structureWindow.

Referenced by StructureWindow::LoadData(), StructureWindow::OnCDD(), and StructureWindow::OnSave().

void Messenger::SetHighlights ( const MoleculeHighlightMap & newHighlights )

Definition at line 429 of file messenger.cpp.

References StructureWindow::glCanvas, highlights, PostRedrawAllSequenceViewers(), RedrawMoleculesWithIdentifier(), RemoveAllHighlights(), Cn3DGLCanvas::structureSet, and structureWindow.

Referenced by AnnotateDialog::OnButton().

void Messenger::SuspendHighlighting ( bool suspend )

Definition at line 442 of file messenger.cpp.

References highlightingSuspended, IsAnythingHighlighted(), PostRedrawAllSequenceViewers(), and PostRedrawAllStructures().

Referenced by AnnotateDialog::NewAnnotation().

void Messenger::ToggleHighlight	(	const Molecule *	molecule,
		int	residueID,
		bool	scrollViewersTo = `false`
	)

Definition at line 380 of file messenger.cpp.

References Molecule::identifier, StructureBase::parentSet, sequenceViewers, and ToggleHighlights().

Referenced by StructureWindow::OnSelect(), StructureSet::SelectByDistance(), and StructureSet::SelectedAtom().

void Messenger::ToggleHighlights	(	const Sequence *	sequence,
		unsigned int	seqIndexFrom,
		unsigned int	seqIndexTo
	)

Definition at line 350 of file messenger.cpp.

References Sequence::identifier, and StructureBase::parentSet.

Referenced by DisplayRowFromSequence::SelectedRange(), BlockMultipleAlignment::SelectedRange(), and ToggleHighlight().

void Messenger::ToggleHighlights	(	const MoleculeIdentifier *	identifier,
		unsigned int	indexFrom,
		unsigned int	indexTo,
		const StructureSet *	set
	)		`[private]`