NCBI C++ ToolKit
Public Member Functions
CWindowSizeArg Class Reference

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Argument class to retrieve and set the window size BLAST algorithm option. More...

#include <algo/blast/blastinput/blast_args.hpp>

+ Inheritance diagram for CWindowSizeArg:
+ Collaboration diagram for CWindowSizeArg:

List of all members.

Public Member Functions

virtual void SetArgumentDescriptions (CArgDescriptions &arg_desc)
 Interface method,.
virtual void ExtractAlgorithmOptions (const CArgs &cmd_line_args, CBlastOptions &options)
 Interface method,.

Detailed Description

Argument class to retrieve and set the window size BLAST algorithm option.

Definition at line 179 of file blast_args.hpp.


Member Function Documentation

void CWindowSizeArg::ExtractAlgorithmOptions ( const CArgs cmd_line_args,
CBlastOptions options 
) [virtual]

Interface method,.

See also:
IBlastCmdLineArgs::SetArgumentDescriptions
Note:
this depends on the matrix already being set...

Reimplemented from IBlastCmdLineArgs.

Definition at line 449 of file blast_args.cpp.

References BLAST_GetSuggestedWindowSize(), CBlastOptions::GetMatrixName(), CBlastOptions::GetProgramType(), kArgWindowSize, and CBlastOptions::SetWindowSize().


The documentation for this class was generated from the following files:
Modified on Mon Sep 22 17:21:07 2014 by modify_doxy.py rev. 426318