NCBI C++ ToolKit
CSeq_loc Member List
This is the complete list of members for CSeq_loc, including all inherited members.
Add(const CSeq_loc &other)CSeq_loc
Add(const CSeq_loc &other, TOpFlags flags, ISynonymMapper *syn_mapper) const CSeq_loc
AddReference(void) const CObject [inline]
Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)CSeq_loc [virtual]
begin(void) const CSeq_loc
CanBeDeleted(void) const THROWS_NONECObject [inline]
CDebugDumpable(void)CDebugDumpable [inline]
ChangeToMix(void)CSeq_loc
ChangeToPackedInt(void)CSeq_loc
CheckId(const CSeq_id *&id, bool may_throw=true) const CSeq_loc [inline]
CheckSelected(E_Choice index) const CSeq_loc_Base [inline]
CObject(void)CObject
CObject(const CObject &src)CObject
Compare(const CSeq_loc &loc) const CSeq_loc
CompareSubLoc(const CSeq_loc &loc, ENa_strand strand, const ISubLocFilter *filter=NULL) const CSeq_loc
const_iterator typedefCSeq_loc
CSeq_loc(void)CSeq_loc [inline]
CSeq_loc(E_Choice index)CSeq_loc
CSeq_loc(TId &id, TPoint point, TStrand strand=eNa_strand_unknown)CSeq_loc
CSeq_loc(TId &id, const TPoints &points, TStrand strand=eNa_strand_unknown)CSeq_loc
CSeq_loc(TId &id, TPoint from, TPoint to, TStrand strand=eNa_strand_unknown)CSeq_loc
CSeq_loc(TId &id, TRanges ivals, TStrand strand=eNa_strand_unknown)CSeq_loc
CSeq_loc(const CSeq_loc &)CSeq_loc [private]
CSeq_loc_Base(void)CSeq_loc_Base
CSerialObject(void)CSerialObject
DebugDump(CDebugDumpContext ddc, unsigned int depth) const CSerialObject [virtual]
DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const CDebugDumpable
DebugDumpText(ostream &out, const string &bundle, unsigned int depth) const CDebugDumpable
DECLARE_INTERNAL_TYPE_INFO()CSeq_loc_Base
DeleteThis(void)CObject [protected, virtual]
DoDeleteThisObject(void)CObject [virtual]
DoNotDeleteThisObject(void)CObject [virtual]
e_Bond enum valueCSeq_loc_Base
E_Choice enum nameCSeq_loc_Base
E_ChoiceStopper enum nameCSeq_loc_Base
e_Empty enum valueCSeq_loc_Base
e_Equiv enum valueCSeq_loc_Base
e_Feat enum valueCSeq_loc_Base
e_Int enum valueCSeq_loc_Base
e_MaxChoice enum valueCSeq_loc_Base
e_Mix enum valueCSeq_loc_Base
e_not_set enum valueCSeq_loc_Base
e_Null enum valueCSeq_loc_Base
e_Packed_int enum valueCSeq_loc_Base
e_Packed_pnt enum valueCSeq_loc_Base
e_Pnt enum valueCSeq_loc_Base
e_Whole enum valueCSeq_loc_Base
EAllocFillMode enum nameCObject
eAllocFillNone enum valueCObject
eAllocFillPattern enum valueCObject
eAllocFillZero enum valueCObject
EnableDebugDump(bool on)CDebugDumpable [static]
end(void) const CSeq_loc
EOpFlags enum nameCSeq_loc
Equals(const CSerialObject &object, ESerialRecursionMode how=eRecursive) const CSerialObject [virtual]
FlipStrand(void)CSeq_loc
fMerge_Abutting enum valueCSeq_loc
fMerge_AbuttingOnly enum valueCSeq_loc
fMerge_All enum valueCSeq_loc
fMerge_Contained enum valueCSeq_loc
fMerge_Overlapping enum valueCSeq_loc
fMerge_OverlappingOnly enum valueCSeq_loc
fMerge_SingleRange enum valueCSeq_loc
fSort enum valueCSeq_loc
fSortAndMerge_All enum valueCSeq_loc
fStrand_Ignore enum valueCSeq_loc
GetAllocFillMode(void)CObject [static]
GetBond(void) const CSeq_loc_Base
GetCircularLength(TSeqPos seq_len) const CSeq_loc
GetEmpty(void) const CSeq_loc_Base
GetEquiv(void) const CSeq_loc_Base
GetFeat(void) const CSeq_loc_Base
GetId(void) const CSeq_loc [inline]
GetInt(void) const CSeq_loc_Base
GetLabel(string *label) const CSeq_loc
GetMix(void) const CSeq_loc_Base
GetNamespaceName(void) const CSerialObject
GetNamespacePrefix(void) const CSerialObject
GetPacked_int(void) const CSeq_loc_Base
GetPacked_pnt(void) const CSeq_loc_Base
GetPnt(void) const CSeq_loc_Base
GetStart(ESeqLocExtremes ext) const CSeq_loc
GetStop(ESeqLocExtremes ext) const CSeq_loc
GetStrand(void) const CSeq_loc
GetThisTypeInfo(void) const =0CSerialObject [pure virtual]
GetTotalRange(void) const CSeq_loc [inline]
GetWhole(void) const CSeq_loc_Base
HasNamespaceName(void) const CSerialObject
HasNamespacePrefix(void) const CSerialObject
Intersect(const CSeq_loc &other, TOpFlags flags, ISynonymMapper *syn_mapper) const CSeq_loc
InvalidateCache(void) const CSeq_loc [inline]
InvalidateIdCache(void) const CSeq_loc [inline]
InvalidateTotalRangeCache(void) const CSeq_loc [inline]
IsAllocatedInPool(void) const THROWS_NONECObject [inline]
IsBond(void) const CSeq_loc_Base [inline]
IsEmpty(void) const CSeq_loc_Base [inline]
IsEquiv(void) const CSeq_loc_Base [inline]
IsFeat(void) const CSeq_loc_Base [inline]
IsInt(void) const CSeq_loc_Base [inline]
IsMix(void) const CSeq_loc_Base [inline]
IsNull(void) const CSeq_loc_Base [inline]
IsPacked_int(void) const CSeq_loc_Base [inline]
IsPacked_pnt(void) const CSeq_loc_Base [inline]
IsPartialStart(ESeqLocExtremes ext) const CSeq_loc
IsPartialStop(ESeqLocExtremes ext) const CSeq_loc
IsPnt(void) const CSeq_loc_Base [inline]
IsReverseStrand(void) const CSeq_loc [inline]
IsSetStrand(EIsSetStrand flag=eIsSetStrand_Any) const CSeq_loc
IsTruncatedStart(ESeqLocExtremes ext) const CSeq_loc
IsTruncatedStop(ESeqLocExtremes ext) const CSeq_loc
IsWhole(void) const CSeq_loc_Base [inline]
kDirtyCache enum valueCSeq_loc [private]
kSeveralIds enum valueCSeq_loc [private]
m_IdCacheCSeq_loc [mutable, private]
m_objectCSeq_loc_Base
m_TotalRangeCacheCSeq_loc [mutable, private]
Merge(TOpFlags flags, ISynonymMapper *syn_mapper) const CSeq_loc
ms_UnassignedByteCSerialObject [static]
ms_UnassignedStrCSerialObject [static]
operator delete(void *ptr)CObject
operator delete(void *ptr, void *place)CObject
operator delete(void *ptr, CObjectMemoryPool *place)CObject
operator delete[](void *ptr)CObject
operator new(size_t size)CObject
operator new(size_t size, void *place)CObject
operator new(size_t size, CObjectMemoryPool *place)CObject
operator new[](size_t size)CObject
operator=(const CSeq_loc &)CSeq_loc [private]
CSerialObject::operator=(const CObject &src) THROWS_NONECObject [inline]
PostRead(void) const CSeq_loc
Referenced(void) const THROWS_NONECObject [inline]
ReferencedOnlyOnce(void) const THROWS_NONECObject [inline]
ReleaseReference(void) const CObject
RemoveReference(void) const CObject [inline]
Reset(void)CSeq_loc_Base [virtual]
ResetSelection(void)CSeq_loc_Base [virtual]
ResetStrand(void)CSeq_loc
Select(E_Choice index, EResetVariant reset=eDoResetVariant)CSeq_loc_Base
Select(E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)CSeq_loc_Base
SelectionName(E_Choice index)CSeq_loc_Base [static]
SetAllocFillMode(EAllocFillMode mode)CObject [static]
SetAllocFillMode(const string &value)CObject [static]
SetBond(TBond &v)CSeq_loc [inline]
SetBond(void)CSeq_loc [inline]
SetEmpty(TEmpty &v)CSeq_loc [inline]
SetEmpty(void)CSeq_loc [inline]
SetEquiv(TEquiv &v)CSeq_loc [inline]
SetEquiv(void)CSeq_loc [inline]
SetFeat(TFeat &v)CSeq_loc [inline]
SetFeat(void)CSeq_loc [inline]
SetId(CSeq_id &id)CSeq_loc
SetId(const CSeq_id &id)CSeq_loc [inline]
SetInt(TInt &v)CSeq_loc [inline]
SetInt(void)CSeq_loc [inline]
SetMix(TMix &v)CSeq_loc [inline]
SetMix(void)CSeq_loc [inline]
SetNull(void)CSeq_loc [inline]
SetPacked_int(TPacked_int &v)CSeq_loc [inline]
SetPacked_int(void)CSeq_loc [inline]
SetPacked_pnt(TPacked_pnt &v)CSeq_loc [inline]
SetPacked_pnt(void)CSeq_loc [inline]
SetPartialStart(bool val, ESeqLocExtremes ext)CSeq_loc
SetPartialStop(bool val, ESeqLocExtremes ext)CSeq_loc
SetPnt(TPnt &v)CSeq_loc [inline]
SetPnt(void)CSeq_loc [inline]
SetStrand(ENa_strand strand)CSeq_loc
SetTruncatedStart(bool val, ESeqLocExtremes ext)CSeq_loc
SetTruncatedStop(bool val, ESeqLocExtremes ext)CSeq_loc
SetVerifyDataGlobal(ESerialVerifyData verify)CSerialObject [static]
SetVerifyDataThread(ESerialVerifyData verify)CSerialObject [static]
SetWhole(TWhole &v)CSeq_loc [inline]
SetWhole(void)CSeq_loc [inline]
Subtract(const CSeq_loc &other, TOpFlags flags, ISynonymMapper *syn_mapper, ILengthGetter *len_getter) const CSeq_loc
TBond typedefCSeq_loc_Base
TEmpty typedefCSeq_loc_Base
TEquiv typedefCSeq_loc_Base
TFeat typedefCSeq_loc_Base
ThrowInvalidSelection(E_Choice index) const CSeq_loc_Base
ThrowNullPointerException(void)CObject [static]
ThrowNullPointerException(const type_info &type)CObject [static]
ThrowUnassigned(TMemberIndex index) const CSerialObject
ThrowUnassigned(TMemberIndex index, const char *file_name, int file_line) const CSerialObject
TId typedefCSeq_loc
TInt typedefCSeq_loc_Base
TIntervals typedefCSeq_loc
TLocations typedefCSeq_loc
TLockerType typedefCObject
TMix typedefCSeq_loc_Base
TOpFlags typedefCSeq_loc
TPacked_int typedefCSeq_loc_Base
TPacked_pnt typedefCSeq_loc_Base
Tparent typedefCSeq_loc
TPnt typedefCSeq_loc_Base
TPoint typedefCSeq_loc
TPoints typedefCSeq_loc
TRange typedefCSeq_loc
TRanges typedefCSeq_loc
TStrand typedefCSeq_loc
TWhole typedefCSeq_loc_Base
UnassignedByte(void)CSerialObject [inline, static]
UnassignedString(void)CSerialObject [inline, static]
UnassignedStringUTF8(void)CSerialObject [inline, static]
Which(void) const CSeq_loc_Base [inline]
x_CalculateTotalRangeCheckId(const CSeq_id *&id) const CSeq_loc [private]
x_ChangeToMix(const CSeq_loc &other)CSeq_loc [private]
x_ChangeToPackedInt(const CSeq_interval &other)CSeq_loc [private]
x_ChangeToPackedInt(const CSeq_loc &other)CSeq_loc [private]
x_ChangeToPackedPnt(const CSeq_loc &other)CSeq_loc [private]
x_CheckId(const CSeq_id *&id, bool may_throw=true) const CSeq_loc [private]
x_CompareSingleId(const CSeq_loc &loc, const CSeq_id *id1, const CSeq_id *id2) const CSeq_loc [private]
x_UpdateId(const CSeq_id *&total_id, const CSeq_id *id, bool may_throw=true) const CSeq_loc [private]
x_UpdateTotalRange(void) const CSeq_loc [private]
~CDebugDumpable(void)CDebugDumpable [virtual]
~CObject(void)CObject [virtual]
~CSeq_loc(void)CSeq_loc [virtual]
~CSeq_loc_Base(void)CSeq_loc_Base [virtual]
~CSerialObject(void)CSerialObject [virtual]
Modified on Wed Jul 09 17:01:08 2014 by modify_doxy.py rev. 426318