NCBI C++ ToolKit
CSeqMap Member List

This is the complete list of members for CSeqMap, including all inherited members.

AddReference(void) const CObjectinline
begin(CScope *scope) const CSeqMap
Begin(CScope *scope) const CSeqMap
BeginResolved(CScope *scope) const CSeqMap
BeginResolved(CScope *scope, const SSeqMapSelector &selector) const CSeqMap
CanBeDeleted(void) const THROWS_NONECObjectinline
CanResolveRange(CScope *scope, const SSeqMapSelector &sel) const CSeqMap
CanResolveRange(CScope *scope, TSeqPos from, TSeqPos length, ENa_strand strand=eNa_strand_plus, size_t maxResolve=size_t(-1), TFlags flags=fDefaultFlags) const CSeqMap
CBioseq_Info classCSeqMapfriend
CDebugDumpable(void)CDebugDumpableinline
CloneFor(const CBioseq &seq) const CSeqMap
CObject(void)CObject
CObject(const CObject &src)CObject
const_iterator typedefCSeqMap
CountSegmentsOfType(ESegmentType type) const CSeqMap
CreateSeqMapForBioseq(const CBioseq &seq)CSeqMapstatic
CreateSeqMapForSeq_loc(const CSeq_loc &loc, CScope *scope)CSeqMapstatic
CSegment classCSeqMapfriend
CSeqMap(const CSeqMap &sm)CSeqMap
CSeqMap(CSeqMap *parent, size_t index)CSeqMapprotected
CSeqMap(void)CSeqMapprotected
CSeqMap(const CSeq_loc &ref)CSeqMapprotected
CSeqMap(TSeqPos len)CSeqMapprotected
CSeqMap(const CSeq_inst &inst)CSeqMapprotected
CSeqMap_CI classCSeqMapfriend
CSeqMap_CI_SegmentInfo classCSeqMapfriend
CSeqMap_SeqPoss classCSeqMapfriend
DebugDump(CDebugDumpContext ddc, unsigned int depth) const CObjectvirtual
DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const CDebugDumpable
DebugDumpText(ostream &out, const string &bundle, unsigned int depth) const CDebugDumpable
DeleteThis(void)CObjectprotectedvirtual
DoDeleteThisObject(void)CObjectvirtual
DoNotDeleteThisObject(void)CObjectvirtual
EAllocFillMode enum nameCObject
eAllocFillNone enum valueCObject
eAllocFillPattern enum valueCObject
eAllocFillZero enum valueCObject
eCounterBitsCanBeDeletedCObjectstatic
eCounterBitsInPlainHeapCObjectstatic
eCounterBitsPlaceMaskCObjectstatic
eCounterStateMaskCObjectstatic
eCounterStepCObjectstatic
eCounterValidCObjectstatic
EFlags enum nameCSeqMap
EnableDebugDump(bool on)CDebugDumpablestatic
end(CScope *scope) const CSeqMap
End(CScope *scope) const CSeqMap
EndResolved(CScope *scope) const CSeqMap
EndResolved(CScope *scope, const SSeqMapSelector &selector) const CSeqMap
ESegmentType enum nameCSeqMap
eSeqChunk enum valueCSeqMap
eSeqData enum valueCSeqMap
eSeqEnd enum valueCSeqMap
eSeqGap enum valueCSeqMap
eSeqLiteral enum valueCSeqMap
eSeqRef enum valueCSeqMap
eSeqSubMap enum valueCSeqMap
fByFeaturePolicy enum valueCSeqMap
fDefaultFlags enum valueCSeqMap
fFindAny enum valueCSeqMap
fFindAnyLeaf enum valueCSeqMap
fFindData enum valueCSeqMap
fFindExactLevel enum valueCSeqMap
fFindGap enum valueCSeqMap
fFindInnerRef enum valueCSeqMap
fFindLeafRef enum valueCSeqMap
fFindRef enum valueCSeqMap
fIgnoreUnresolved enum valueCSeqMap
FindResolved(CScope *scope, TSeqPos pos, const SSeqMapSelector &selector) const CSeqMap
FindSegment(TSeqPos pos, CScope *scope) const CSeqMap
GetAllocFillMode(void)CObjectstatic
GetLength(CScope *scope) const CSeqMapinline
GetMol(void) const CSeqMapinline
GetSegmentsCount(void) const CSeqMapinline
GetSeqMapForSeq_loc(const CSeq_loc &loc, CScope *scope)CSeqMapstatic
HasSegmentOfType(ESegmentType type) const CSeqMap
HasZeroGapAt(TSeqPos pos, CScope *scope=0) const CSeqMap
InsertSegmentGap(const CSeqMap_CI &seg, TSeqPos length)CSeqMap
IsAllocatedInPool(void) const THROWS_NONECObjectinline
LoadSeq_data(TSeqPos pos, TSeqPos len, const CSeq_data &data)CSeqMap
m_BioseqCSeqMapprotected
m_ChangedCSeqMapprotected
m_DeltaCSeqMapprotected
m_HasSegmentsCSeqMapmutableprotected
m_MolCSeqMapprotected
m_ResolvedCSeqMapmutableprotected
m_SegmentsCSeqMapprotected
m_SeqLengthCSeqMapmutableprotected
m_SeqMap_MtxCSeqMapmutableprotected
operator delete(void *ptr)CObject
operator delete(void *ptr, void *place)CObject
operator delete(void *ptr, CObjectMemoryPool *place)CObject
operator delete[](void *ptr)CObject
operator new(size_t size)CObject
operator new(size_t size, void *place)CObject
operator new(size_t size, CObjectMemoryPool *place)CObject
operator new[](size_t size)CObject
operator=(const CSeqMap &)CSeqMapprivate
CObject::operator=(const CObject &src) THROWS_NONECObjectinline
Referenced(void) const THROWS_NONECObjectinline
ReferencedOnlyOnce(void) const THROWS_NONECObjectinline
ReleaseReference(void) const CObject
RemoveReference(void) const CObjectinline
RemoveSegment(const CSeqMap_CI &seg)CSeqMap
ResetMol(void)CSeqMap
ResetRepr(void)CSeqMap
ResolveAll(void) const CSeqMapprivate
ResolvedRangeIterator(CScope *scope, TSeqPos from, TSeqPos length, ENa_strand strand=eNa_strand_plus, size_t maxResolve=size_t(-1), TFlags flags=fDefaultFlags) const CSeqMap
SetAllocFillMode(EAllocFillMode mode)CObjectstatic
SetAllocFillMode(const string &value)CObjectstatic
SetMol(CSeq_inst::TMol mol)CSeqMap
SetRegionInChunk(CTSE_Chunk_Info &chunk, TSeqPos pos, TSeqPos length)CSeqMap
SetRepr(CSeq_inst::TRepr repr)CSeqMap
SetSegmentData(const CSeqMap_CI &seg, TSeqPos length, CSeq_data &data)CSeqMap
SetSegmentGap(const CSeqMap_CI &seg, TSeqPos length)CSeqMap
SetSegmentGap(const CSeqMap_CI &seg, TSeqPos length, CSeq_data &gap_data)CSeqMap
SetSegmentRef(const CSeqMap_CI &seg, TSeqPos length, const CSeq_id_Handle &ref_id, TSeqPos ref_pos, bool ref_minus_strand)CSeqMap
SPosLessSegment classCSeqMapfriend
TChanged typedefCSeqMapprotected
TCount typedefCObject
TCounter typedefCObject
TFlags typedefCSeqMap
THasSegments typedefCSeqMapprotected
ThrowNullPointerException(void)CObjectstatic
ThrowNullPointerException(const type_info &type)CObjectstatic
TLockerType typedefCObject
TMol typedefCSeqMap
TSegments typedefCSeqMapprotected
x_Add(CSeqMap *submap)CSeqMapprotected
x_Add(const CSeq_data &data, TSeqPos len)CSeqMapprotected
x_Add(const CPacked_seqint &seq)CSeqMapprotected
x_Add(const CPacked_seqpnt &seq)CSeqMapprotected
x_Add(const CSeq_loc_mix &seq)CSeqMapprotected
x_Add(const CSeq_loc_equiv &seq)CSeqMapprotected
x_Add(const CSeq_literal &seq)CSeqMapprotected
x_Add(const CDelta_seq &seq)CSeqMapprotected
x_Add(const CSeq_loc &seq)CSeqMapprotected
x_Add(const CSeq_id &seq)CSeqMapprotected
x_Add(const CSeq_point &seq)CSeqMapprotected
x_Add(const CSeq_interval &seq)CSeqMapprotected
x_AddEnd(void)CSeqMapprotected
x_AddGap(TSeqPos len, bool unknown_len)CSeqMapprotected
x_AddGap(TSeqPos len, bool unknown_len, const CSeq_data &gap_data)CSeqMapprotected
x_AddGap(TSeqPos len, bool unknown_len, const CSeq_literal &gap_data)CSeqMapprotected
x_AddSegment(ESegmentType type, TSeqPos len, bool unknown_len=false)CSeqMapinlineprotected
x_AddSegment(ESegmentType type, TSeqPos len, const CObject *object)CSeqMapprotected
x_AddSegment(ESegmentType type, const CObject *object, TSeqPos refPos, TSeqPos len, ENa_strand strand=eNa_strand_plus)CSeqMapprotected
x_AddUnloadedSeq_data(TSeqPos len)CSeqMapprotected
x_DoUpdateSeq_inst(CSeq_inst &inst)CSeqMapprotected
x_FindSegment(TSeqPos position, CScope *scope) const CSeqMapprotected
x_GetBioseqInfo(const CSegment &seg, CScope *scope) const CSeqMapprotected
x_GetChunkToLoad(const CSegment &seg) const CSeqMapprotected
x_GetFirstEndSegmentIndex(void) const CSeqMapinlineprotected
x_GetLastEndSegmentIndex(void) const CSeqMapinlineprotected
x_GetObject(const CSegment &seg) const CSeqMapprotected
x_GetRefMinusStrand(const CSegment &seg) const CSeqMapprotected
x_GetRefPosition(const CSegment &seg) const CSeqMapprotected
x_GetRefSeqid(const CSegment &seg) const CSeqMapprotected
x_GetSegment(size_t index) const CSeqMapinlineprotected
x_GetSegmentEndPosition(size_t index, CScope *scope) const CSeqMapinlineprotected
x_GetSegmentException(size_t index) const CSeqMapprotected
x_GetSegmentLength(size_t index, CScope *scope) const CSeqMapinlineprotected
x_GetSegmentPosition(size_t index, CScope *scope) const CSeqMapinlineprotected
x_GetSeq_data(const CSegment &seg) const CSeqMapprotected
x_GetSeq_literal(const CSegment &seg) const CSeqMapprotected
x_GetSubSeqMap(const CSegment &seg, CScope *scope, bool resolveExternal=false) const CSeqMapprotected
x_IsChanged(void) const CSeqMapinlineprotected
x_LoadObject(const CSegment &seg) const CSeqMapprotected
x_ResolveSegmentLength(size_t index, CScope *scope) const CSeqMapprotected
x_ResolveSegmentPosition(size_t index, CScope *scope) const CSeqMapprotected
x_SetChanged(size_t index)CSeqMapprotected
x_SetChunk(CSegment &seg, CTSE_Chunk_Info &chunk)CSeqMapprotected
x_SetObject(CSegment &seg, const CObject &obj)CSeqMapprotected
x_SetSegment(size_t index)CSeqMapprotected
x_SetSegmentData(size_t index, TSeqPos length, CSeq_data &data)CSeqMapprotected
x_SetSegmentGap(size_t index, TSeqPos length, CSeq_data *gap_data=0)CSeqMapprotected
x_SetSegmentRef(size_t index, TSeqPos length, const CSeq_id &ref_id, TSeqPos ref_pos, bool ref_minus_strand)CSeqMapprotected
x_SetSeq_data(size_t index, CSeq_data &data)CSeqMapprotected
x_SetSubSeqMap(size_t index, CSeqMap_Delta_seqs *subMap)CSeqMapprotected
x_StartEditing(void)CSeqMapprotected
x_UpdateSeq_inst(CSeq_inst &inst)CSeqMapinlineprotected
~CDebugDumpable(void)CDebugDumpablevirtual
~CObject(void)CObjectvirtual
~CSeqMap(void)CSeqMap
Modified on Thu Feb 11 17:52:29 2016 by modify_doxy.py rev. 426318