CSeqLocInfo Class Reference
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Search Toolkit Book for CSeqLocInfo

#include <blast_aux.hpp>

Inheritance diagram for CSeqLocInfo:

[legend]Collaboration diagram for CSeqLocInfo:

[legend]List of all members.

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Detailed Description

structure for seqloc info

Definition at line 127 of file blast_aux.hpp.

Public Types
enum	ETranslationFrame {   eFramePlus1 = 1, eFramePlus2 = 2, eFramePlus3 = 3, eFrameMinus1 = -1,   eFrameMinus2 = -2, eFrameMinus3 = -3, eFrameNotSet = 0 }
Public Member Functions
	CSeqLocInfo (objects::CSeq_interval *interval, int frame)
const objects::CSeq_interval &	GetInterval () const
const objects::CSeq_id &	GetSeqId () const
void	SetInterval (objects::CSeq_interval *interval)
int	GetFrame () const
void	SetFrame (int frame)
	operator TSeqRange () const
Private Attributes
CRef< objects::CSeq_interval >	m_Interval
ETranslationFrame	m_Frame
Friends
ostream &	operator<< (ostream &out, const CSeqLocInfo &rhs)

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Member Enumeration Documentation

enum CSeqLocInfo::ETranslationFrame

Enumerator: eFramePlus1  eFramePlus2  eFramePlus3  eFrameMinus1  eFrameMinus2  eFrameMinus3  eFrameNotSet  Definition at line 129 of file blast_aux.hpp.

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Constructor & Destructor Documentation

CSeqLocInfo::CSeqLocInfo (  objects::CSeq_interval *  interval, int  frame )  [inline]

Definition at line 138 of file blast_aux.hpp. References SetFrame().

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Member Function Documentation

int CSeqLocInfo::GetFrame (   )  const [inline]

Definition at line 146 of file blast_aux.hpp. References m_Frame.

const objects::CSeq_interval& CSeqLocInfo::GetInterval (   )  const [inline]

Definition at line 142 of file blast_aux.hpp. References m_Interval.

const objects::CSeq_id& CSeqLocInfo::GetSeqId (   )  const [inline]

Definition at line 143 of file blast_aux.hpp. References m_Interval.

CSeqLocInfo::operator TSeqRange (   )  const [inline]

Definition at line 148 of file blast_aux.hpp. References m_Interval.

void CSeqLocInfo::SetInterval (  objects::CSeq_interval *  interval  )  [inline]

Definition at line 144 of file blast_aux.hpp. References m_Interval, and CRef< C, Locker >::Reset().

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Friends And Related Function Documentation

ostream& operator<< (  ostream &  out, const CSeqLocInfo &  rhs )  [friend]

Definition at line 153 of file blast_aux.hpp.

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Member Data Documentation

ETranslationFrame CSeqLocInfo::m_Frame [private]

Definition at line 160 of file blast_aux.hpp. Referenced by GetFrame(), and SetFrame().

CRef<objects::CSeq_interval> CSeqLocInfo::m_Interval [private]

Definition at line 159 of file blast_aux.hpp. Referenced by GetInterval(), GetSeqId(), operator TSeqRange(), and SetInterval().

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The documentation for this class was generated from the following file:

• include/algo/blast/api/blast_aux.hpp

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