NCBI C++ ToolKit
Public Member Functions | Static Public Member Functions | Public Attributes
CBlastSetupTestFixture Class Reference

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+ Collaboration diagram for CBlastSetupTestFixture:

List of all members.

Public Member Functions

 CBlastSetupTestFixture ()
 ~CBlastSetupTestFixture ()

Static Public Member Functions

static void s_TestSingleSubjectNuclMask (BLAST_SequenceBlk const *seqblk)
static void s_ValidateProtein130912 (CRef< IQueryFactory > query_factory, const CBlastOptions &opts, string prefix)
 Auxiliary function to validate that the query sequence data hasn't been modified (filtering can change the actual sequence data...)
static BlastScoringOptionss_GetScoringOpts (const CBlastOptions &opts)
static
BlastEffectiveLengthsOptions
s_GetEffLenOpts (const CBlastOptions &opts)

Public Attributes

CTestObjMgrm_Om

Detailed Description

Definition at line 69 of file blastsetup_unit_test.cpp.


Constructor & Destructor Documentation

Definition at line 74 of file blastsetup_unit_test.cpp.

References CTestObjMgr::Instance().

Definition at line 78 of file blastsetup_unit_test.cpp.


Member Function Documentation

Definition at line 134 of file blastsetup_unit_test.cpp.

References CBlastOptions::GetEffLenOpts().

Definition at line 129 of file blastsetup_unit_test.cpp.

References CBlastOptions::GetScoringOpts().

static void CBlastSetupTestFixture::s_ValidateProtein130912 ( CRef< IQueryFactory query_factory,
const CBlastOptions opts,
string  prefix 
) [inline, static]

Auxiliary function to validate that the query sequence data hasn't been modified (filtering can change the actual sequence data...)

Definition at line 93 of file blastsetup_unit_test.cpp.

References ILocalQueryData::GetSequenceBlk(), BLAST_SequenceBlk::length, IQueryFactory::MakeLocalQueryData(), and BLAST_SequenceBlk::sequence.


Member Data Documentation

Definition at line 72 of file blastsetup_unit_test.cpp.


The documentation for this class was generated from the following file:
Modified on Sat Feb 28 10:57:20 2015 by modify_doxy.py rev. 426318