src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp File Reference

#include <ncbi_pch.hpp>
#include <corelib/test_boost.hpp>
#include <corelib/metareg.hpp>
#include <objmgr/object_manager.hpp>
#include <objmgr/util/sequence.hpp>
#include <objmgr/bioseq_handle.hpp>
#include <objmgr/seq_vector.hpp>
#include <objtools/readers/fasta.hpp>
#include <algo/blast/api/blast_types.hpp>
#include "dust_filter.hpp"
#include <algo/blast/api/blast_exception.hpp>
#include <algo/blast/api/blast_options_handle.hpp>
#include <blast_objmgr_priv.hpp>
#include <algo/blast/core/blast_setup.h>
#include <algo/blast/core/blast_stat.h>
#include <algo/blast/core/blast_encoding.h>
#include <algo/blast/core/gencode_singleton.h>
#include <algo/blast/api/effsearchspace_calc.hpp>
#include <algo/blast/api/objmgr_query_data.hpp>
#include "test_objmgr.hpp"
#include "blast_test_util.hpp"
#include <string>
#include <vector>

Include dependency graph for blastsetup_unit_test.cpp:

Go to the source code of this file.

Classes
struct	CBlastSetupTestFixture
Functions
	BOOST_AUTO_TEST_CASE (NumberOfContextsBlastp)
	BOOST_AUTO_TEST_CASE (NumberOfContextsBlastn)
	BOOST_AUTO_TEST_CASE (NumberOfContextsBlastx)
	BOOST_AUTO_TEST_CASE (NumberOfContextsTblastx)
	BOOST_AUTO_TEST_CASE (NumberOfContextsTblastn)
	BOOST_AUTO_TEST_CASE (NumberOfContextsRPSBlast)
	BOOST_AUTO_TEST_CASE (NumberOfContextsRPSTblastn)
	BOOST_AUTO_TEST_CASE (NumberOfContextsThrow)
	BOOST_AUTO_TEST_CASE (QueryIsTranslated)
	BOOST_AUTO_TEST_CASE (QueryIsPlainNucleotide)
	BOOST_AUTO_TEST_CASE (SubjectIsProtein)
	BOOST_AUTO_TEST_CASE (SubjectIsNucleotide)
	BOOST_AUTO_TEST_CASE (SubjectIsPlainNucleotide)
	BOOST_AUTO_TEST_CASE (BlastNumber2Program_CORE)
	BOOST_AUTO_TEST_CASE (String2Enum_Blastp)
	BOOST_AUTO_TEST_CASE (String2Enum_Blastn)
	BOOST_AUTO_TEST_CASE (String2Enum_Blastx)
	BOOST_AUTO_TEST_CASE (String2Enum_Tblastx)
	BOOST_AUTO_TEST_CASE (String2Enum_Tblastn)
	BOOST_AUTO_TEST_CASE (String2Enum_Megablast)
	BOOST_AUTO_TEST_CASE (String2Enum_DiscoMegablast)
	BOOST_AUTO_TEST_CASE (String2Enum_PSIBlast)
	BOOST_AUTO_TEST_CASE (String2Enum_RPSBlast)
	BOOST_AUTO_TEST_CASE (String2Enum_RPSTblastn)
	BOOST_AUTO_TEST_CASE (String2Enum_Throw1)
	BOOST_AUTO_TEST_CASE (String2Enum_PSITblastn)
	BOOST_AUTO_TEST_CASE (FindMatrixPathSuccess)
	BOOST_AUTO_TEST_CASE (FindMatrixPathNoNcbiRcFile)
	BOOST_AUTO_TEST_CASE (FindMatrixPathFailure)
	BOOST_AUTO_TEST_CASE (FindMatrixPathWithNull)
	BOOST_AUTO_TEST_CASE (Context2Frame_ProteinQuery)
	BOOST_AUTO_TEST_CASE (Context2Frame_NucleotideQuery)
	BOOST_AUTO_TEST_CASE (Context2Frame_TranslatedQuery)
	BOOST_AUTO_TEST_CASE (Context2Frame_Error)
	BOOST_AUTO_TEST_CASE (SetupSubjectsProt)
	BOOST_AUTO_TEST_CASE (SetupSubjectsProtRange)
	BOOST_AUTO_TEST_CASE (SetupSubjectsNuclPlusStrandFiltered)
	BOOST_AUTO_TEST_CASE (SetupSubjectsNuclMinusStrandFiltered)
	BOOST_AUTO_TEST_CASE (SetupSubjectsNuclBothStrandFiltered)
	BOOST_AUTO_TEST_CASE (SetupSubjectsNuclPlusStrand)
	BOOST_AUTO_TEST_CASE (SetupSubjectsNuclMinusStrand)
	BOOST_AUTO_TEST_CASE (SetupSubjectsNuclBothStrand)
	BOOST_AUTO_TEST_CASE (GetSequenceProteinWithSelenocysteine)
	BOOST_AUTO_TEST_CASE (GetSequenceNCBI4NA_NoSentinels)
	BOOST_AUTO_TEST_CASE (GetSequenceNCBI2NA)
	BOOST_AUTO_TEST_CASE (GetGapOnlySequenceNCBI2NA)
	BOOST_AUTO_TEST_CASE (GetGapInSequenceNCBI2NA)
	BOOST_AUTO_TEST_CASE (testCalcEffLengths)
	BOOST_AUTO_TEST_CASE (testEffSearchSpaceCalculator_Ungapped)
	BOOST_AUTO_TEST_CASE (testEffSearchSpaceCalculatorNoSideEffects)
	BOOST_AUTO_TEST_CASE (testCalcEffLengthsWithUserSearchSpace)
	BOOST_AUTO_TEST_CASE (testMitochondrialGeneticCode)
	BOOST_AUTO_TEST_CASE (testMainSetup)
	BOOST_AUTO_TEST_CASE (testSetupWithZeroLengthSequence)
	BOOST_AUTO_TEST_CASE (GetSubjectTranslations)
	BOOST_AUTO_TEST_CASE (GetMixedFrameQuery)
	BOOST_AUTO_TEST_CASE (GetMixedFrameQueryOnOneStrand)

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Function Documentation

BOOST_AUTO_TEST_CASE (  GetMixedFrameQueryOnOneStrand   )

Definition at line 1264 of file blastsetup_unit_test.cpp. References BLAST_CreateMixedFrameDNATranslation(), CODON_LENGTH, CBlastOptionsFactory::Create(), eBlastx, eNa_strand_plus, CBlastOptions::GetProgramType(), CBlastOptions::GetStrandOption(), id, CTestObjMgr::Instance(), ITERATE, prog, SetupQueries(), and SetupQueryInfo().

BOOST_AUTO_TEST_CASE (  GetMixedFrameQuery   )

Definition at line 1225 of file blastsetup_unit_test.cpp. References BLAST_CreateMixedFrameDNATranslation(), CODON_LENGTH, CBlastOptionsFactory::Create(), eBlastx, eNa_strand_both, CBlastOptions::GetProgramType(), CBlastOptions::GetStrandOption(), id, CTestObjMgr::Instance(), ITERATE, NUM_FRAMES, prog, SetupQueries(), and SetupQueryInfo().

BOOST_AUTO_TEST_CASE (  GetSubjectTranslations   )

Definition at line 1183 of file blastsetup_unit_test.cpp. References BLAST_GetAllTranslations(), SBlastSequence::data, eBlastEncodingNcbi4na, eNa_strand_both, eSentinels, FindGeneticCode(), AutoPtr< X, Del >::get(), GetSequence(), id, CTestObjMgr::Instance(), SBlastSequence::length, and NUM_FRAMES.

BOOST_AUTO_TEST_CASE (  testSetupWithZeroLengthSequence   )

Definition at line 1135 of file blastsetup_unit_test.cpp. References eBlastTypeBlastn, eNa_strand_both, CBLAST_SequenceBlk::Get(), id1, id2, CTestObjMgr::Instance(), ITERATE, BLAST_SequenceBlk::lcase_mask, SSeqRange::left, SSeqRange::right, BlastMaskLoc::seqloc_array, SetupQueries(), SetupQueryInfo(), and BlastSeqLoc::ssr.

BOOST_AUTO_TEST_CASE (  testMainSetup   )

Definition at line 1039 of file blastsetup_unit_test.cpp. References BLAST_MainSetUp(), Blast_MessageFree(), BlastFindMatrixPath(), BlastMaskLocFree(), BlastQuerySetUpOptionsFree(), BlastQuerySetUpOptionsNew(), BlastScoreBlkFree(), BlastScoringOptionsFree(), BlastScoringOptionsNew(), BlastSeqLocFree(), SBlastScoreMatrix::data, eBlastTypeBlastn, eNa_strand_both, BlastScoringOptions::gap_extend, BlastScoringOptions::gap_open, id, CTestObjMgr::Instance(), mask, BlastScoreBlk::matrix, BlastScoringOptions::penalty, BlastScoringOptions::reward, SetupQueries(), and SetupQueryInfo().

BOOST_AUTO_TEST_CASE (  testMitochondrialGeneticCode   )

Definition at line 1013 of file blastsetup_unit_test.cpp. References eBlastTypeBlastx, eNa_strand_both, GenCodeSingletonFini(), GenCodeSingletonInit(), id, CTestObjMgr::Instance(), SetupQueries(), and SetupQueryInfo().

BOOST_AUTO_TEST_CASE (  testCalcEffLengthsWithUserSearchSpace   )

Definition at line 975 of file blastsetup_unit_test.cpp. References BLAST_CalcEffLengths(), BLAST_FillEffectiveLengthsOptions(), Blast_KarlinBlkCopy(), Blast_ScoreBlkKbpIdealCalc(), Blast_ScoreBlkMatrixInit(), BLASTAA_SEQ_CODE, BlastEffectiveLengthsOptionsFree(), BlastEffectiveLengthsOptionsNew(), BlastEffectiveLengthsParametersFree(), BlastEffectiveLengthsParametersNew(), BlastFindMatrixPath(), BlastQueryInfoFree(), BlastQueryInfoNew(), BlastScoreBlkFree(), BlastScoreBlkNew(), BlastScoringOptionsFree(), BlastScoringOptionsNew(), BlastQueryInfo::contexts, eBlastTypeBlastp, BlastContextInfo::eff_searchsp, BlastScoreBlk::kbp_gap, BlastScoreBlk::kbp_gap_std, BlastScoreBlk::kbp_ideal, malloc(), and BlastContextInfo::query_length.

BOOST_AUTO_TEST_CASE (  testEffSearchSpaceCalculatorNoSideEffects   )

Definition at line 950 of file blastsetup_unit_test.cpp. References CBlastOptionsFactory::Create(), eBlastp, id, and CTestObjMgr::Instance().

BOOST_AUTO_TEST_CASE (  testEffSearchSpaceCalculator_Ungapped   )

Definition at line 924 of file blastsetup_unit_test.cpp. References CBlastOptionsFactory::Create(), eBlastp, id, and CTestObjMgr::Instance().

BOOST_AUTO_TEST_CASE (  testCalcEffLengths   )

Definition at line 806 of file blastsetup_unit_test.cpp. References CScope::AddDefaults(), BLAST_CalcEffLengths(), BLAST_DEFAULT_MATRIX, Blast_MessageFree(), BlastEffectiveLengthsParametersFree(), BlastEffectiveLengthsParametersNew(), BlastFindMatrixPath(), BlastScoreBlkFree(), BlastSetup_ScoreBlkInit(), CBlastOptionsFactory::Create(), eBlastn, eBlastp, eBlastx, eRPSBlast, eRPSTblastn, eTblastn, eTblastx, CBlastOptions::GetProgramType(), CBlastOptions::GetStrandOption(), CTestObjMgr::Instance(), ITERATE, prog, BlastEffectiveLengthsParameters::real_db_length, BlastEffectiveLengthsParameters::real_num_seqs, SetupQueries(), and SetupQueryInfo().

BOOST_AUTO_TEST_CASE (  GetGapInSequenceNCBI2NA   )

Definition at line 783 of file blastsetup_unit_test.cpp. References SBlastSequence::data, eBlastEncodingNcbi2na, eNa_strand_plus, eNoSentinels, AutoPtr< X, Del >::get(), GetSequence(), CTestObjMgr::Instance(), and SBlastSequence::length.

BOOST_AUTO_TEST_CASE (  GetGapOnlySequenceNCBI2NA   )

Definition at line 760 of file blastsetup_unit_test.cpp. References SBlastSequence::data, eBlastEncodingNcbi2na, eNa_strand_plus, eNoSentinels, AutoPtr< X, Del >::get(), GetSequence(), CTestObjMgr::Instance(), and SBlastSequence::length.

BOOST_AUTO_TEST_CASE (  GetSequenceNCBI2NA   )

Definition at line 745 of file blastsetup_unit_test.cpp. References COMPRESSION_RATIO, eBlastEncodingNcbi2na, eNa_strand_plus, eNoSentinels, GetSequence(), CTestObjMgr::Instance(), and SBlastSequence::length.

BOOST_AUTO_TEST_CASE (  GetSequenceNCBI4NA_NoSentinels   )

Definition at line 730 of file blastsetup_unit_test.cpp. References eBlastEncodingNcbi4na, eNa_strand_plus, eNoSentinels, GetSequence(), CTestObjMgr::Instance(), and SBlastSequence::length.

BOOST_AUTO_TEST_CASE (  GetSequenceProteinWithSelenocysteine   )

Definition at line 695 of file blastsetup_unit_test.cpp. References AMINOACID_TO_NCBISTDAA, SBlastSequence::data, DIM, eBlastEncodingProtein, eNa_strand_unknown, eSentinels, AutoPtr< X, Del >::get(), CObjectManager::GetInstance(), GetSequence(), id, and ReadFasta().

BOOST_AUTO_TEST_CASE (  SetupSubjectsNuclBothStrand   )

Definition at line 668 of file blastsetup_unit_test.cpp. References BlastSequenceBlkFree(), CBlastOptionsFactory::Create(), eBlastn, eNa_strand_both, COpenRange< Position >::GetLength(), id, ITERATE, and SetupSubjects().

BOOST_AUTO_TEST_CASE (  SetupSubjectsNuclMinusStrand   )

Definition at line 642 of file blastsetup_unit_test.cpp. References BlastSequenceBlkFree(), CBlastOptionsFactory::Create(), eBlastn, eNa_strand_minus, COpenRange< Position >::GetLength(), id, ITERATE, and SetupSubjects().

BOOST_AUTO_TEST_CASE (  SetupSubjectsNuclPlusStrand   )

Definition at line 615 of file blastsetup_unit_test.cpp. References BlastSequenceBlkFree(), CBlastOptionsFactory::Create(), eBlastn, eNa_strand_plus, COpenRange< Position >::GetLength(), id, ITERATE, and SetupSubjects().

BOOST_AUTO_TEST_CASE (  SetupSubjectsNuclBothStrandFiltered   )

Definition at line 587 of file blastsetup_unit_test.cpp. References Blast_FindDustFilterLoc(), BlastSequenceBlkFree(), CSeq_id_Base::e_Gi, eNa_strand_both, COpenRange< Position >::GetLength(), CBlastOptionsHandle::GetOptions(), CBlastOptions::GetProgramType(), id, ITERATE, and SetupSubjects().

BOOST_AUTO_TEST_CASE (  SetupSubjectsNuclMinusStrandFiltered   )

Definition at line 560 of file blastsetup_unit_test.cpp. References Blast_FindDustFilterLoc(), BlastSequenceBlkFree(), CSeq_id_Base::e_Gi, eNa_strand_minus, COpenRange< Position >::GetLength(), CBlastOptionsHandle::GetOptions(), CBlastOptions::GetProgramType(), id, ITERATE, and SetupSubjects().

BOOST_AUTO_TEST_CASE (  SetupSubjectsNuclPlusStrandFiltered   )

Definition at line 533 of file blastsetup_unit_test.cpp. References Blast_FindDustFilterLoc(), BlastSequenceBlkFree(), CSeq_id_Base::e_Gi, eNa_strand_plus, COpenRange< Position >::GetLength(), CBlastOptionsHandle::GetOptions(), CBlastOptions::GetProgramType(), id, ITERATE, and SetupSubjects().

BOOST_AUTO_TEST_CASE (  SetupSubjectsProtRange   )

Definition at line 501 of file blastsetup_unit_test.cpp. References BlastSequenceBlkFree(), CBlastOptionsFactory::Create(), eBlastp, id, CTestObjMgr::Instance(), ITERATE, and SetupSubjects().

BOOST_AUTO_TEST_CASE (  SetupSubjectsProt   )

Definition at line 471 of file blastsetup_unit_test.cpp. References BlastSequenceBlkFree(), CBlastOptionsFactory::Create(), eBlastp, GetLength(), id, CTestObjMgr::Instance(), ITERATE, and SetupSubjects().

BOOST_AUTO_TEST_CASE (  Context2Frame_Error   )

Definition at line 462 of file blastsetup_unit_test.cpp. References BLAST_ContextToFrame(), and eBlastTypeUndefined.

BOOST_AUTO_TEST_CASE (  Context2Frame_TranslatedQuery   )

Definition at line 422 of file blastsetup_unit_test.cpp. References BLAST_ContextToFrame(), eBlastTypeBlastx, eBlastTypeRpsTblastn, and eBlastTypeTblastx.

BOOST_AUTO_TEST_CASE (  Context2Frame_NucleotideQuery   )

Definition at line 407 of file blastsetup_unit_test.cpp. References BLAST_ContextToFrame(), eBlastTypeBlastn, and error().

BOOST_AUTO_TEST_CASE (  Context2Frame_ProteinQuery   )

Definition at line 358 of file blastsetup_unit_test.cpp. References BLAST_ContextToFrame(), eBlastTypeBlastp, eBlastTypePsiBlast, eBlastTypeRpsBlast, and eBlastTypeTblastn.

BOOST_AUTO_TEST_CASE (  FindMatrixPathWithNull   )

Definition at line 353 of file blastsetup_unit_test.cpp. References BlastFindMatrixPath().

BOOST_AUTO_TEST_CASE (  FindMatrixPathFailure   )

Definition at line 347 of file blastsetup_unit_test.cpp. References BlastFindMatrixPath(), input(), and strdup.

BOOST_AUTO_TEST_CASE (  FindMatrixPathNoNcbiRcFile   )

Definition at line 337 of file blastsetup_unit_test.cpp. References BlastFindMatrixPath(), CMetaRegistry::GetSearchPath(), input(), CMetaRegistry::SetSearchPath(), sfree, and strdup.

BOOST_AUTO_TEST_CASE (  FindMatrixPathSuccess   )

Definition at line 329 of file blastsetup_unit_test.cpp. References BlastFindMatrixPath(), input(), sfree, and strdup.

BOOST_AUTO_TEST_CASE (  String2Enum_PSITblastn   )

Definition at line 324 of file blastsetup_unit_test.cpp. References ePSITblastn, and ProgramNameToEnum().

BOOST_AUTO_TEST_CASE (  String2Enum_Throw1   )

Definition at line 320 of file blastsetup_unit_test.cpp. References ProgramNameToEnum().

BOOST_AUTO_TEST_CASE (  String2Enum_RPSTblastn   )

Definition at line 316 of file blastsetup_unit_test.cpp. References eRPSTblastn, and ProgramNameToEnum().

BOOST_AUTO_TEST_CASE (  String2Enum_RPSBlast   )

Definition at line 312 of file blastsetup_unit_test.cpp. References eRPSBlast, and ProgramNameToEnum().

BOOST_AUTO_TEST_CASE (  String2Enum_PSIBlast   )

Definition at line 308 of file blastsetup_unit_test.cpp. References ePSIBlast, and ProgramNameToEnum().

BOOST_AUTO_TEST_CASE (  String2Enum_DiscoMegablast   )

Definition at line 304 of file blastsetup_unit_test.cpp. References eDiscMegablast, and ProgramNameToEnum().

BOOST_AUTO_TEST_CASE (  String2Enum_Megablast   )

Definition at line 300 of file blastsetup_unit_test.cpp. References eMegablast, and ProgramNameToEnum().

BOOST_AUTO_TEST_CASE (  String2Enum_Tblastn   )

Definition at line 296 of file blastsetup_unit_test.cpp. References eTblastn, and ProgramNameToEnum().

BOOST_AUTO_TEST_CASE (  String2Enum_Tblastx   )

Definition at line 292 of file blastsetup_unit_test.cpp. References eTblastx, and ProgramNameToEnum().

BOOST_AUTO_TEST_CASE (  String2Enum_Blastx   )

Definition at line 288 of file blastsetup_unit_test.cpp. References eBlastx, and ProgramNameToEnum().

BOOST_AUTO_TEST_CASE (  String2Enum_Blastn   )

Definition at line 284 of file blastsetup_unit_test.cpp. References eBlastn, and ProgramNameToEnum().

BOOST_AUTO_TEST_CASE (  String2Enum_Blastp   )

Definition at line 280 of file blastsetup_unit_test.cpp. References eBlastp, and ProgramNameToEnum().

BOOST_AUTO_TEST_CASE (  BlastNumber2Program_CORE   )

Definition at line 252 of file blastsetup_unit_test.cpp. References Blast_ProgramNameFromType(), eBlastTypeUndefined, and TestUtil::GetAllBlastProgramTypes().

BOOST_AUTO_TEST_CASE (  SubjectIsPlainNucleotide   )

Definition at line 238 of file blastsetup_unit_test.cpp. References Blast_ProgramIsPhiBlast(), Blast_ProgramNameFromType(), Blast_SubjectIsNucleotide(), Blast_SubjectIsTranslated(), eBlastTypeBlastn, TestUtil::GetAllBlastProgramTypes(), ITERATE, and prog.

BOOST_AUTO_TEST_CASE (  SubjectIsNucleotide   )

Definition at line 223 of file blastsetup_unit_test.cpp. References Blast_ProgramNameFromType(), Blast_SubjectIsNucleotide(), eBlastTypeBlastn, eBlastTypePhiBlastn, eBlastTypePsiTblastn, eBlastTypeTblastn, eBlastTypeTblastx, TestUtil::GetAllBlastProgramTypes(), ITERATE, and prog.

BOOST_AUTO_TEST_CASE (  SubjectIsProtein   )

Definition at line 208 of file blastsetup_unit_test.cpp. References Blast_ProgramIsRpsBlast(), Blast_ProgramNameFromType(), Blast_SubjectIsProtein(), eBlastTypeBlastp, eBlastTypeBlastx, eBlastTypePhiBlastp, eBlastTypePsiBlast, TestUtil::GetAllBlastProgramTypes(), ITERATE, and prog.

BOOST_AUTO_TEST_CASE (  QueryIsPlainNucleotide   )

Definition at line 195 of file blastsetup_unit_test.cpp. References Blast_ProgramIsPhiBlast(), Blast_ProgramNameFromType(), Blast_QueryIsNucleotide(), Blast_QueryIsTranslated(), eBlastTypeBlastn, TestUtil::GetAllBlastProgramTypes(), ITERATE, and prog.

BOOST_AUTO_TEST_CASE (  QueryIsTranslated   )

Definition at line 182 of file blastsetup_unit_test.cpp. References Blast_ProgramNameFromType(), Blast_QueryIsTranslated(), eBlastTypeBlastx, eBlastTypeRpsTblastn, eBlastTypeTblastx, TestUtil::GetAllBlastProgramTypes(), ITERATE, and prog.

BOOST_AUTO_TEST_CASE (  NumberOfContextsThrow   )

Definition at line 175 of file blastsetup_unit_test.cpp. References eBlastTypeUndefined, and GetNumberOfContexts().

BOOST_AUTO_TEST_CASE (  NumberOfContextsRPSTblastn   )

Definition at line 170 of file blastsetup_unit_test.cpp. References eBlastTypeRpsTblastn, GetNumberOfContexts(), and NUM_FRAMES.

BOOST_AUTO_TEST_CASE (  NumberOfContextsRPSBlast   )

Definition at line 165 of file blastsetup_unit_test.cpp. References eBlastTypeRpsBlast, and GetNumberOfContexts().

BOOST_AUTO_TEST_CASE (  NumberOfContextsTblastn   )

Definition at line 160 of file blastsetup_unit_test.cpp. References eBlastTypeTblastn, and GetNumberOfContexts().

BOOST_AUTO_TEST_CASE (  NumberOfContextsTblastx   )

Definition at line 155 of file blastsetup_unit_test.cpp. References eBlastTypeTblastx, GetNumberOfContexts(), and NUM_FRAMES.

BOOST_AUTO_TEST_CASE (  NumberOfContextsBlastx   )

Definition at line 150 of file blastsetup_unit_test.cpp. References eBlastTypeBlastx, GetNumberOfContexts(), and NUM_FRAMES.

BOOST_AUTO_TEST_CASE (  NumberOfContextsBlastn   )

Definition at line 145 of file blastsetup_unit_test.cpp. References eBlastTypeBlastn, GetNumberOfContexts(), and NUM_STRANDS.

BOOST_AUTO_TEST_CASE (  NumberOfContextsBlastp   )

Definition at line 141 of file blastsetup_unit_test.cpp. References eBlastTypeBlastp, and GetNumberOfContexts().

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