src/app/blastdb/blastdbcheck.cpp File Reference

#include <ncbi_pch.hpp>
#include <corelib/ncbiapp.hpp>
#include <corelib/ncbienv.hpp>
#include <corelib/ncbiargs.hpp>
#include <corelib/ncbifile.hpp>
#include <algo/blast/api/version.hpp>
#include <objtools/blast/seqdb_reader/seqdb.hpp>
#include <util/random_gen.hpp>
#include "blastdb_aux.hpp"
#include <algo/blast/blastinput/blast_input.hpp>
#include "../blast/blast_app_util.hpp"
#include <iostream>
#include <sstream>
#include <set>
#include <vector>

Include dependency graph for blastdbcheck.cpp:

Go to the source code of this file.

Classes
class	CBlastDbCheckApplication
	CBlastDbCheckApplication: the main application class. More...
class	CBlastDbCheckLog
class	CTestAction
class	CWrap
class	CTestActionList
class	CMetaDataTest
class	CStrideTest
class	CSampleTest
class	CEndsTest
class	CTestData
class	CDbTest
class	CDirTest
Typedefs
typedef set< int >	TSeen
Enumerations
enum	{   e_Silent, e_Brief, e_Summary, e_Details,   e_Minutiae, e_Max = e_Minutiae }
	Verbosity levels. More...
enum	{ e_IsamLookup = 1 }
	Types of tests (bit). More...
Functions
	USING_SCOPE (blast)
static string	s_VerbosityString (int v)
static string	s_VerbosityText ()
int	main (int argc, const char *argv[])
Variables
	USING_NCBI_SCOPE

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Typedef Documentation

typedef set<int> TSeen

Definition at line 228 of file blastdbcheck.cpp.

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Enumeration Type Documentation

anonymous enum

Verbosity levels. Enumerator: e_Silent  e_Brief  e_Summary  e_Details  e_Minutiae  e_Max  Definition at line 80 of file blastdbcheck.cpp.

anonymous enum

Types of tests (bit). Enumerator: e_IsamLookup  Definition at line 90 of file blastdbcheck.cpp.

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Function Documentation

int main (  int  argc, const char *  argv[] )

Definition at line 1034 of file blastdbcheck.cpp. References eDS_Default.

static string s_VerbosityString (  int  v  )  [static]

Definition at line 94 of file blastdbcheck.cpp. References e_Brief, e_Details, e_Minutiae, e_Silent, and e_Summary. Referenced by CBlastDbCheckApplication::Run(), and s_VerbosityText().

static string s_VerbosityText (   )  [static]

Definition at line 107 of file blastdbcheck.cpp. References e_Max, and s_VerbosityString(). Referenced by CBlastDbCheckApplication::Init().

USING_SCOPE (  blast   )

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Variable Documentation

USING_NCBI_SCOPE

Definition at line 51 of file blastdbcheck.cpp.

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