src/algo/blast/api/bl2seq.cpp File Reference

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Detailed Description

Implementation of CBl2Seq class.

Definition in file bl2seq.cpp.

#include <ncbi_pch.hpp>
#include <objmgr/util/sequence.hpp>
#include <objects/seqloc/Seq_loc.hpp>
#include <objects/seqalign/Seq_align_set.hpp>
#include <objects/seqalign/Seq_align.hpp>
#include <algo/blast/api/bl2seq.hpp>
#include <algo/blast/api/seqsrc_multiseq.hpp>
#include <algo/blast/api/seqinfosrc_seqvec.hpp>
#include "dust_filter.hpp"
#include <algo/blast/api/repeats_filter.hpp>
#include "blast_seqalign.hpp"
#include "blast_objmgr_priv.hpp"
#include <algo/blast/api/objmgr_query_data.hpp>
#include <algo/blast/core/blast_def.h>
#include <algo/blast/core/blast_util.h>
#include <algo/blast/core/blast_setup.h>
#include <algo/blast/core/lookup_wrap.h>
#include <algo/blast/core/blast_engine.h>
#include <algo/blast/core/blast_traceback.h>
#include <algo/blast/core/blast_hspstream.h>
#include <algo/blast/core/hspfilter_collector.h>
#include "blast_aux_priv.hpp"

Include dependency graph for bl2seq.cpp:

Go to the source code of this file.

Functions
	USING_SCOPE (objects)

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