NCBI C++ ToolKit
Class List
Here are the classes, structs, unions and interfaces with brief descriptions:
__bigint_struct
__bigint_struct_u
__Enter__
_Alloc_traits< _Tp, _Allocator >
CObjectList::_CColumn
_character_set_alias
_Const_traits< _Tp >
bm::_copyright< T >Internal structure
_Cor_Def
_cs_blkdesc
_cs_clientmsg
_cs_command
_cs_command_list
_cs_config
_cs_connection
_cs_context
_cs_datafmt
_cs_daterec
_cs_datetime
_cs_datetime4
_cs_dynamic
_cs_iodesc
_cs_locale
_cs_money
_cs_money4
_cs_numeric
_cs_objdata
_cs_objname
_cs_param
_cs_servermsg
_cs_varbinary
_cs_varchar
_csremote_proc
_ct_colinfo
_Cur_Aln
_Cur_Loc
_Cxl_Als
_Cxl_Los
_dblib_error_message
_DBREMOTE_PROC
_DBREMOTE_PROC_PARAM
_dheader
_drecord
_Fld_Mtf
_Gib_Scd
_Hashtable_iterator< _Val, _Key, _HF, _ExK, _EqK, _All >
_Hashtable_node< _Val >
_hcattr
_hchk
_hdbc
_hdesc
_heattr
_henv
_hsattr
_hstmt
_Ht_iterator< _Val, _Traits, _Key, _HF, _ExK, _EqK, _All >
_InputPeakStruct for holding a single peak
_M_node_allocator_type
_MassMask
_MassPeak
_MODULEINFO
_Nonconst_traits< _Tp >
_pbcb
_PSIAlignedBlockThis structure keeps track of the regions aligned between the query sequence and those that were not purged
_PSIAlignmentTraitsAuxiliary structure to maintain information about two aligned regions between the query and a subject sequence
_PSIInternalPssmDataInternal representation of a PSSM in various stages of its creation and its dimensions
_PSIMsaInternal multiple alignment data structure used by the PSSM engine
_PSIMsaCellInternal data structure to represent a position in the multiple sequence alignment data structure
_PSIPackedMsaCompact version of PSIMsa structure
_PSIPackedMsaCellCompact version of the PSIMsaCell structure
_PSISequenceWeightsInternal data structure to keep computed sequence weights
_Qry_Seq
_Rcx_Ptl
pcrecpp::_RE_MatchObject< T >
_Rnd_Smp
_Seg_Cmp
_Seg_Gsm
_Seg_Nsm
_Seg_Ord
_Seq_Mtf
_sql_error
_sql_errors
_Stl_prime< _Tp >
_STLP_alloc_proxy< _Value, _Tp, _MaybeReboundAlloc >
_STLP_Identity< _Tp >
_tds_bcpcoldata
_tds_compiletime_settingsA structure to hold all the compile-time settings
_tds_cursor
_tds_cursor_status
_tds_encodingInformation relevant to libiconv
_tds_errno_message_flags
_Thd_Cxe
_Thd_Gsm
_Thd_Tbl
_Thd_Tst
AaLookupBackboneCellStructure defining one cell of the compacted lookup table
AaLookupSmallboneCellStructure defining one cell of the small (i.e., use short) lookup table
AalookupTestFixtureA general lookup table for the test
AascanTestFixtureThe test fixture to use for all test cases in this file
AbstractLexer
AbstractParser
AbstractToken
CBinsGlyph::accum_study
AddRemoveIdEditAction< add >
AddRemoveIdEditAction< false >
AdvancedProteinOptionsHandleFixture
AgeFunctor
xml::impl::ait_implClass that does all the work behind xml::attributes::iterator and xml::attributes::const_iterator
AlertToId
ALICORD
IBISAnnotateDialog::AlignAnnotInfo
AlignedDM
AlignIdOrder
AlignLenOrder
AlignmentCollection
AlignmentDisplay
AlignmentFeature
AlignmentManager
AlignmentSet
AlignmentUtility
AlignSeqOrder
bm::all_set< T >Structure carries pointer on bit block with all bits 1
bm::all_set< T >::all_set_block
AllCutoffScores
rapidjson::AllocatorConcept for allocating, resizing and freeing memory block
CVecscreen::AlnInfoMatch info
alp
alp_data
alp_reg
alp_sim
AlphaInformation about the alphabet used by seg
AMatrix
AMatrix_base
ambchar
AnimationControls
AnnotateDialog
AnnotationEditorDialog
AnnotDataResolver< CSeq_align_Handle >
AnnotDataResolver< CSeq_feat_EditHandle >
AnnotDataResolver< CSeq_graph_Handle >
AnnotObjTrait< CSeq_align >
AnnotObjTrait< CSeq_feat >
AnnotObjTrait< CSeq_graph >
AnyType
AOutputFormatter
NWinHook::API_FUNC_ID
AppResources
pcrecpp::Arg
array< T >
rapidjson::GenericValue< Encoding, Allocator >::Array
array_map< K, V, Cmp, kCapacityIncrement >
array_positive< T >
array_set< T, Cmp >
ArrayDeleter< X >Functor template for deleting array of objects
AScoreWithParam
ASNDataManager
ASNInputContainerStream< ASNContainerClass, ASNElementClass >
CObjectIStream::AsnIo
CObjectOStream::AsnIo
ASNIOTestApp
ASNLexer
AsnMemoryRead
AsnMemoryWrite
ASNParser
AtomCoord
Residue::AtomInfo
AtomPntr
AtomSet
AtomStyle
xml::attributes::attrThe xml::attributes::attr class is used to hold information about one attribute
xml::impl::attr_instance
xml::attributesThe xml::attributes class is used to access all the attributes of one xml::node
CPhyloTreeCalculator::AttrKeyStructure allows us to more efficiently store and look up keys (usually seq-ids) in m_AttrTable
auto_ptr< X >Auto_ptr --
auto_ptr< X >::auto_ptr_ref< Y >
AutoArray< X, Del >AutoArray --
AutoPtr< X, Del >AutoPtr --
StyleSettings::BackboneStyle
BadECNumberChar
rapidjson::BaseReaderHandler< Encoding >Default implementation of Handler
BaseTagMapper
basic_string
BCP_HOSTCOLINFO
BCP_HOSTFILEINFO
binary_function
binary_functor< Type >TEMPLATE binary functor base struct
BioseqInfo
BioTreeBaseNode< TNodeData, TNodeFeatures >Basic data contained in every bio-tree node
bm::bit_AND< W >Bit AND functor
bm::bit_ASSIGN< W >Bit ASSIGN functor
bm::bit_block_guard< BlocksManager >Bit block buffer guard
bm::bit_COUNT< W >Bit COUNT functor
bm::bit_COUNT_A< W >Bit COUNT A functor
bm::bit_COUNT_AND< W >Bit COUNT AND functor
bm::bit_COUNT_B< W >Bit COUNT B functor
bm::bit_COUNT_OR< W >Bit COUNT OR functor
bm::bit_COUNT_SUB_AB< W >Bit COUNT SUB AB functor
bm::bit_COUNT_SUB_BA< W >Bit SUB BA functor
bm::bit_count_table< T >Structure to aid in counting bits table contains count of bits in 0-255 diapason of numbers
bm::bit_COUNT_XOR< W >Bit COUNT XOR functor
bm::bit_grabber< T, BPC >
bm::bit_grabber< unsigned char, 8 >
bm::bit_grabber< unsigned short, 16 >
bm::bit_grabber< unsigned, 32 >
bm::bit_in< TDecoder >Byte based reader for un-aligned bit streaming
bm::bit_OR< W >Bit OR functor
bm::bit_out< TEncoder >Byte based writer for un-aligned bit streaming
bm::bit_SUB< W >Bit SUB functor
bm::bit_trans_grabber< T, BPC, BPS >
bm::bit_XOR< W >Bit XOR functor
bm::bvector< Alloc >::iterator_base::bitblock_descrInformation about current bitblock
bm::bitblock_get_adapterBit-block get adapter, takes bitblock and represents it as a get_32() accessor function /internal
bm::bitblock_store_adapterBit-block store adapter, takes bitblock and saves results into it /internal
bm::bitblock_sum_adapterBit-block sum adapter, takes values and sums it /internal
BitmapCharRec
BitmapFontRec
BitStream
bitvec< T >
Blast_AminoAcidCompositionRepresents the composition of an amino-acid sequence, in the ncbistdaa alphabet
Blast_CompositionWorkspaceWork arrays used to perform composition-based matrix adjustment
BLAST_DiagHashTrack initial word matches using hashing with chaining
BLAST_DiagTableStructure containing parameters needed for initial word extension
Blast_ExtendWordStructure for keeping initial word extension information
Blast_ForbiddenRangesAn instance of Blast_ForbiddenRanges is used by the Smith-Waterman algorithm to represent ranges in the database that are not to be aligned
Blast_GumbelBlkStructure to hold the Gumbel parameters (for FSC)
Blast_KarlinBlkStructure to hold the Karlin-Altschul parameters
BLAST_LetterProbRecords probability of letter appearing in sequence
BLAST_Matrix
Blast_MatrixInfoInformation about a amino-acid substitution matrix
Blast_MessageStructure to hold the a message from the core of the BLAST engine
Blast_RedoAlignCallbacksCallbacks used by Blast_RedoOneMatch and Blast_RedoOneMatchSmithWaterman routines
Blast_RedoAlignParamsA parameter block for the Blast_RedoOneMatch and Blast_RedoOneMatchSmithWaterman routines
Blast_ResCompIntermediate structure to store the composition of a sequence
Blast_ResFreqStores the letter frequency of a sequence or database
Blast_ScoreFreqHolds score frequencies used in calculation of Karlin-Altschul parameters for an ungapped search
BLAST_SequenceBlkStructure to hold a sequence
BlastAaLookupTableThe basic lookup table structure for blastp searches
BlastCompo_AlignmentWithin the composition adjustment module, an object of type BlastCompo_Alignment represents a distinct alignment of the query sequence to the current subject sequence
BlastCompo_GappingParamsParameters used to compute gapped alignments
BlastCompo_HeapA BlastCompo_Heap represents a collection of alignments between one query sequence and several matching subject sequences
BlastCompo_HeapRecordThe struct BlastCompo_HeapRecord data type is used below to define the internal structure of a BlastCompo_Heap (see below)
BlastCompo_MatchingSequenceA BlastCompo_MatchingSequence represents a subject sequence to be aligned with the query
BlastCompo_QueryInfoCollected information about a query
BlastCompo_SequenceDataBlastCompo_SequenceData - represents a string of amino acids or nucleotides
BlastCompo_SequenceRangeBlastCompo_SequenceRange - a struct whose instances represent a range of data in a sequence
BlastCompressedAaLookupTableThe lookup table structure for protein searches using a compressed alphabet
BlastContextInfoThe context related information
BlastCoreAuxStructStructure to be passed to s_BlastSearchEngineCore, containing pointers to various preallocated structures and arrays
BlastDatabaseOptionsOptions used to create the ReadDBFILE structure Include database name and various information for restricting the database to a subset
BlastdbCopyApplication
BlastDiagnosticsReturn statistics from the BLAST search
BlastEffectiveLengthsOptionsOptions for setting up effective lengths and search spaces
BlastEffectiveLengthsParametersParameters for setting up effective lengths and search spaces
BlastEngineTestFixture
BLASTer
BlastExtensionOptionsOptions used for gapped extension These include: a
BlastExtensionParametersComputed values used as parameters for gapped alignments
BlastGapAlignStructStructure supporting the gapped alignment
BlastGapDPAuxiliary structure for dynamic programming gapped extension
BlastGappedCutoffsAll the gapped cutoff values that can change from context to context
BlastGappedStatsStructure containing hit counts from the gapped stage of a BLAST search
BlastGapSWAuxiliary structures for Smith-Waterman alignment with traceback
BlastHitListThe structure to contain all BLAST results for one query sequence
BlastHitSavingOptionsOptions used when evaluating and saving hits These include: a
BlastHitSavingParametersParameter block that contains a pointer to BlastHitSavingOptions and the values derived from it
BlastHSPStructure holding all information about an HSP
BlastHSPBestHitData
BlastHSPBestHitOptionsOptions for the Best Hit HSP collection algorithm
BlastHSPBestHitParamsKeeps parameters used in best hit algorithm
BlastHSPCollectorDataData structure used by the writer
BlastHSPCollectorParamsKeeps prelim_hitlist_size and HitSavingOptions together
BlastHSPCullingDataThe following are implementations for BlastHSPWriter ADT
BlastHSPCullingOptionsOptions for the HSP culling algorithm
BlastHSPCullingParamsKeeps parameters used in best hit algorithm
BlastHSPFilteringOptionsStructure containing the HSP filtering/writing options
BlastHSPLinkThe following structure is used in "link_hsps" to decide between two different "gapping" models
BlastHSPListThe structure to hold all HSPs for a given sequence after the gapped alignment
BlastHSPPipeADT definition of BlastHSPPipe
BlastHSPPipeInfoA wrap of data structure used to create a pipe
BlastHSPResultsThe structure to contain all BLAST results, for multiple queries
BlastHSPStreamDefault implementation of BlastHSPStream
BlastHSPStreamResultBatchStructure used to hold a collection of hits retrieved from the HSPStream
BlastHSPStreamResultsBatchArrayStructure to extract the contents of the BlastHSPStream for MT traceback processing
BlastHSPwOid
BlastHSPWriterADT definition of BlastHSPWriter
BlastHSPWriterInfoA wrap of data structure used to create a writer
BlastInitHitListStructure to hold all initial HSPs for a given subject sequence
BlastInitHSPStructure to hold the initial HSP information
BlastInitialWordOptionsOptions needed for initial word finding and processing
BlastInitialWordParametersParameter block that contains a pointer to BlastInitialWordOptions and the values derived from it
BlastIntervalTreeMain structure describing an interval tree
BlastKappa_GappingParamsContextData and data-structures needed to perform a gapped alignment
BlastKappa_SavedParametersA BlastKappa_SavedParameters holds the value of certain search parameters on entry to RedoAlignmentCore
BlastKappa_SequenceInfoBLAST-specific information that is associated with a BlastCompo_MatchingSequence
BlastLinkedHSPSetSimple doubly linked list of HSPs, used for calculating sum statistics
BlastLinkHSPParametersParameter block for linking HSPs with sum statistics
BlastMaskLocStructure for keeping the query masking information
BlastMBLookupTableThe lookup table structure used for Mega BLAST
BlastNaLookupTableThe basic lookup table structure for blastn searches
BlastNuclOptionsHandleFixture
BlastOffsetPairThis symbol enables the verbose option in makeblastdb and other BLAST+ search command line applications, as well as the option to submit searches to the test server in NCBI for remote BLAST searches #define _BLAST_DEBUG 1
BlastQueryInfoThe query related information
BlastRawCutoffsStructure holding raw cutoff and gap-x-drop values
BlastRPSAuxInfoInformation derived from RPS blast '.aux' file
BlastRPSFreqRatiosHeader
BlastRPSInfoThe RPS engine uses this structure to access all of the RPS blast related data (assumed to be collected in an implementation-specific manner)
BlastRPSLookupFileHeaderHeader of RPS blast '.loo' file
BlastRPSLookupTableThe basic lookup table structure for RPS blast searches
BlastRPSProfileHeaderHeader of RPS blast '.rps' file
BlastScoreBlkStructure used for scoring calculations
BlastScoringOptionsScoring options block Used to produce the BlastScoreBlk structure This structure may be needed for lookup table construction (proteins only), and for evaluating alignments
BlastScoringParametersScoring parameters block Contains scoring-related information that is actually used for the blast search
BlastSegOne sequence segment within an HSP
BlastSeqLocUsed to hold a set of positions, mostly used for filtering
BlastSeqSrcComplete type definition of Blast Sequence Source ADT
BlastSeqSrcGetSeqArgStructure used as the second argument to functions satisfying the GetSeqBlkFnPtr signature, associated with index-based implementations of the BlastSeqSrc interface
BlastSeqSrcIteratorComplete type definition of Blast Sequence Source Iterator
BlastSeqSrcNewInfoComplete type definition of the structure used to create a new BlastSeqSrc
BlastSeqSrcSetRangesArgStructure used as the argument to function SetRanges
BlastSmallNaLookupTableLookup table structure for blastn searches with small queries
blastStr
BlastUngappedCutoffsAll the ungapped cutoff values that can change from context to context
BlastUngappedDataStructure to hold ungapped alignment information
BlastUngappedStatsStructure containing hit counts from the ungapped stage of a BLAST search
Block
bm::block_allocatorDefault malloc based bitblock allocator class
bm::blocks_manager< Alloc >::block_any_funcFunctor detects if any bit set
bm::blocks_manager< Alloc >::block_copy_funcBlock copy functor
bm::blocks_manager< Alloc >::block_count_arr_funcBitcounting functor filling the block counts array
bm::blocks_manager< Alloc >::block_count_baseBase class for bitcounting functors
bm::blocks_manager< Alloc >::block_count_change_funcBit value change counting functor
bm::blocks_manager< Alloc >::block_count_funcBitcounting functor
bm::bvector< Alloc >::iterator_base::block_descr
bm::blocks_manager< Alloc >::block_free_funcBlock deallocation functor
bm::blocks_manager< Alloc >::block_invert_funcBitblock invert functor
bm::blocks_manager< Alloc >::block_one_funcFill block with all-one bits functor
bm::blocks_manager< Alloc >::block_opt_func
bm::block_set_table< T >Structure keeps all-left/right ON bits masks
bm::blocks_manager< Alloc >::block_zero_funcSet block zero functor
BlockAligner
BlockAligner::BlockAlignerOptions
BlockAlignerOptionsDialog
BlockBoundaryAlgorithm
BlockEditingParams
BlockExtender
CBlockedAlignmentEditor::BlockExtensionBound
BlockFormater
BlockMultipleAlignment::BlockInfo
BlockIntersector
BlockModel
BlockModelPair
BlockMultipleAlignment
bm::blocks_manager< Alloc >Bitvector blocks manager Embedded class managing bit-blocks on very low level. Includes number of functor classes used in different bitset algorithms
bm::blocks_manager< Alloc >::bm_func_baseBase functor class (block visitor)
bm::blocks_manager< Alloc >::bm_func_base_constBase functor class connected for "constant" functors
BMARefinerInterface
BMARefinerOptions
BMARefinerOptionsDialog
BMAUtils
bm::globals< T >::bo
Bond
BondStyle
BoundaryShapeEllipseBoundaryShapeEllipse --
branch_chain
bm::bv_statisticsStructure with statistical information about bitset's memory allocation details
bm::bvector< Alloc >Bitvector with runtime compression of bits
bm::bvector_mini< A >Bitvector class with very limited functionality
bm::bvmini< N >Mini bitvector used in bvector template to keep block type flags
SSubString::ByLength
SSubString::ByOrder
CObjectIStream::ByteBlock
CObjectOStream::ByteBlock
bz_stream
bzFile
C2DLayoutEngineClass C2DLayoutEngine defines the interface for a standard 2D layout engine
C2naCmp
C2naExpandToIupacna
C2naRevCmp
C2naReverse
C2naTo2naExpand
C2naTo4na
C2naTo8na
C2naToIupacna
CTreeIterator::C4Each
C4naCmp
C4naRevCmp
C4naReverse
C4naTo2na
C4naTo2naExpand
C4naTo8na
C4naToIupacna
C5ColExporter
C5ColExporterFactory
C5ColExportJobC5ColExportJob
C5ColExportPage
C5ColExportParams
C5ColLoadManagerC5ColLoadManager
C5ColObjectLoaderC5ColObjectLoader
C8naCmp
C8naTo2na
C8naToIupacna
CCode_break_Base::C_AaAmino acid
CTrna_ext_Base::C_AaAa this carries
CSeqEdit_Cmd_ReplaceAnnot_Base::C_Data::C_AlignC_Align --
CPC_AssaySubmit_Base::C_AssayAssay Description or pre-existing Identifier
CPermutator8b::C_Atom
CIconUrl_Base::C_AttlistC_Attlist --
CId_Base::C_AttlistC_Attlist --
CUrl_Base::C_AttlistC_Attlist --
CApad_Base::C_AttlistC_Attlist --
CFileName_Base::C_AttlistC_Attlist --
CObjectUrl_Base::C_AttlistC_Attlist --
CPad_Base::C_AttlistC_Attlist --
CStrip_Base::C_AttlistC_Attlist --
CSubs_Base::C_AttlistC_Attlist --
COperand_Base::C_AttlistC_Attlist --
CData_set_id_type_Base::C_AttlistC_Attlist --
CData_set_id_Base::C_Data_set_id_type::C_AttlistC_Attlist --
CFFile_Base::C_AttlistC_Attlist --
CFilter_Base::C_AttlistC_Attlist --
CFileConfiguration_Base::C_AttlistC_Attlist --
CBaseAddress_Base::C_AttlistC_Attlist --
CCharacterSet_Base::C_AttlistC_Attlist --
CCL_Base::C_AttlistC_Attlist --
CCL_Base::C_E_CL::C_Output::C_AttlistC_Attlist --
CClCompile_Base::C_AttlistC_Attlist --
CClInclude_Base::C_AttlistC_Attlist --
CClCompile_Base::C_E_ClCompile::C_CompileAsManaged::C_AttlistC_Attlist --
CClCompile_Base::C_E_ClCompile::C_PrecompiledHeader::C_AttlistC_Attlist --
CCLRSupport_Base::C_AttlistC_Attlist --
CCompile_Base::C_AttlistC_Attlist --
CConfiguration_Base::C_AttlistC_Attlist --
CCOMReference_Base::C_AttlistC_Attlist --
CConfigurationType_Base::C_AttlistC_Attlist --
CContent_Base::C_AttlistC_Attlist --
CCPPClean_Base::C_E_CPPClean::C_Output::C_AttlistC_Attlist --
CCustomBuild_Base::C_AttlistC_Attlist --
CCPPClean_Base::C_AttlistC_Attlist --
CCustomBuildStep_Base::C_AttlistC_Attlist --
CDebugSymbols_Base::C_AttlistC_Attlist --
CDebugType_Base::C_AttlistC_Attlist --
CDeployDirSuffix_Base::C_AttlistC_Attlist --
CEmbeddedResource_Base::C_AttlistC_Attlist --
CEmbedManifest_Base::C_AttlistC_Attlist --
CEnableSQLServerDebugging_Base::C_AttlistC_Attlist --
CEnableUnmanagedDebugging_Base::C_AttlistC_Attlist --
CEnableSecurityDebugging_Base::C_AttlistC_Attlist --
CErrorReportUrl_Base::C_AttlistC_Attlist --
CFileAssociation_Base::C_AttlistC_Attlist --
CErrorReport_Base::C_AttlistC_Attlist --
CFolder_Base::C_AttlistC_Attlist --
CImport_Base::C_AttlistC_Attlist --
CInstall_Base::C_AttlistC_Attlist --
CInstallFrom_Base::C_AttlistC_Attlist --
CImportGroup_Base::C_AttlistC_Attlist --
CInstallUrl_Base::C_AttlistC_Attlist --
CItem_Base::C_AttlistC_Attlist --
CItemDefinitionGroup_Base::C_AttlistC_Attlist --
CItemGroup_Base::C_AttlistC_Attlist --
CKeyword_Base::C_AttlistC_Attlist --
CLangVersion_Base::C_AttlistC_Attlist --
CLIB_Base::C_E_LIB::C_Output::C_AttlistC_Attlist --
CLIB_Base::C_AttlistC_Attlist --
CLink_Base::C_AttlistC_Attlist --
CManifest_Base::C_AttlistC_Attlist --
CLinkIncremental_Base::C_AttlistC_Attlist --
CMidl_Base::C_AttlistC_Attlist --
CMapFileExtensions_Base::C_AttlistC_Attlist --
CMinimumRequiredVersion_Base::C_AttlistC_Attlist --
CMSBuild_Base::C_AttlistC_Attlist --
CMSBuild_Base::C_E_MSBuild::C_Output::C_AttlistC_Attlist --
CMt_Base::C_AttlistC_Attlist --
CMt_Base::C_E_Mt::C_Output::C_AttlistC_Attlist --
CMyType_Base::C_AttlistC_Attlist --
CNativeReference_Base::C_AttlistC_Attlist --
CNone_Base::C_AttlistC_Attlist --
CNoConfig_Base::C_AttlistC_Attlist --
CNoStdLib_Base::C_AttlistC_Attlist --
CAffected_channel_Base::C_AttlistC_Attlist --
CNoStandardLibraries_Base::C_AttlistC_Attlist --
CNoWarn_Base::C_AttlistC_Attlist --
COnError_Base::C_AttlistC_Attlist --
COptimize_Base::C_AttlistC_Attlist --
COptionCompare_Base::C_AttlistC_Attlist --
CAssay_Base::C_AttlistC_Attlist --
CAlternative_protein_Base::C_AttlistC_Attlist --
COptionExplicit_Base::C_AttlistC_Attlist --
CAssay_Base::C_Method::C_EMethod::C_AttlistC_Attlist --
CAssay_Base::C_Taxonomy::C_AttlistC_Attlist --
CAssembly_Base::C_AttlistC_Attlist --
CAssembly_Base::C_SnpStat::C_AttlistC_Attlist --
CBaseURL_Base::C_AttlistC_Attlist --
CComponent_Base::C_AttlistC_Attlist --
COptionInfer_Base::C_AttlistC_Attlist --
CExchangeSet_Base::C_AttlistC_Attlist --
CExchangeSet_Base::C_SourceDatabase::C_AttlistC_Attlist --
CExchangeSet_Base::C_Query::C_AttlistC_Attlist --
CExchangeSet_Base::C_Summary::C_AttlistC_Attlist --
CFxnSet_Base::C_AttlistC_Attlist --
CMapLoc_Base::C_AttlistC_Attlist --
CPrimarySequence_Base::C_AttlistC_Attlist --
CAminoacid_modification_Base::C_AttlistC_Attlist --
COptionStrict_Base::C_AttlistC_Attlist --
CRs_Base::C_AttlistC_Attlist --
CRs_Base::C_Het::C_AttlistC_Attlist --
CRs_Base::C_Validation::C_AttlistC_Attlist --
COSVersion_Base::C_AttlistC_Attlist --
CRs_Base::C_Create::C_AttlistC_Attlist --
CRs_Base::C_Update::C_AttlistC_Attlist --
CRs_Base::C_Sequence::C_AttlistC_Attlist --
CRs_Base::C_E_MergeHistory::C_AttlistC_Attlist --
CAnalysis_result_Base::C_AttlistC_Attlist --
CRs_Base::C_E_AlleleOrigin::C_AttlistC_Attlist --
CRs_Base::C_E_Frequency::C_AttlistC_Attlist --
CRsLinkout_Base::C_AttlistC_Attlist --
COutDir_Base::C_AttlistC_Attlist --
CRsStruct_Base::C_AttlistC_Attlist --
CSs_Base::C_AttlistC_Attlist --
CAnalysis_summary_Base::C_AttlistC_Attlist --
COutputPath_Base::C_AttlistC_Attlist --
COutputType_Base::C_AttlistC_Attlist --
CPage_Base::C_AttlistC_Attlist --
CAnalysis_timestamp_Base::C_AttlistC_Attlist --
CAsapratio_contribution_Base::C_AttlistC_Attlist --
CPlatformFamilyName_Base::C_AttlistC_Attlist --
CPlatform_Base::C_AttlistC_Attlist --
CAsapratio_lc_heavypeak_Base::C_AttlistC_Attlist --
CPlatformID_Base::C_AttlistC_Attlist --
CAsapratio_lc_lightpeak_Base::C_AttlistC_Attlist --
CPlatformName_Base::C_AttlistC_Attlist --
CPlatformTarget_Base::C_AttlistC_Attlist --
CPostBuildEvent_Base::C_AttlistC_Attlist --
CAsapratio_result_Base::C_AttlistC_Attlist --
CAsapratio_summary_Base::C_AttlistC_Attlist --
CPreBuildEvent_Base::C_AttlistC_Attlist --
CPreLinkEvent_Base::C_AttlistC_Attlist --
CProductName_Base::C_AttlistC_Attlist --
CAsapratio_peptide_data_Base::C_AttlistC_Attlist --
CProductVersion_Base::C_AttlistC_Attlist --
CAsapratio_timestamp_Base::C_AttlistC_Attlist --
CProject_Base::C_AttlistC_Attlist --
CContributing_channel_Base::C_AttlistC_Attlist --
CProjectConfiguration_Base::C_AttlistC_Attlist --
CData_filter_Base::C_AttlistC_Attlist --
CProjectGuid_Base::C_AttlistC_Attlist --
CProjectReference_Base::C_AttlistC_Attlist --
CDataset_derivation_Base::C_AttlistC_Attlist --
CProjectType_Base::C_AttlistC_Attlist --
CProjectTypeGuids_Base::C_AttlistC_Attlist --
CDatabase_refresh_timestamp_Base::C_AttlistC_Attlist --
CPropertyGroup_Base::C_AttlistC_Attlist --
CPublisherName_Base::C_AttlistC_Attlist --
CPublishFile_Base::C_AttlistC_Attlist --
CDistribution_point_Base::C_AttlistC_Attlist --
CEnzymatic_search_constraint_Base::C_AttlistC_Attlist --
CError_point_Base::C_AttlistC_Attlist --
CRC_Base::C_AttlistC_Attlist --
CRC_Base::C_E_RC::C_Output::C_AttlistC_Attlist --
CReference_Base::C_AttlistC_Attlist --
CInputfile_Base::C_AttlistC_Attlist --
CPublishUrl_Base::C_AttlistC_Attlist --
CInteract_summary_Base::C_AttlistC_Attlist --
CRemoteDebugEnabled_Base::C_AttlistC_Attlist --
CRemoteDebugMachine_Base::C_AttlistC_Attlist --
CRemoveIntegerChecks_Base::C_AttlistC_Attlist --
CFragment_masses_Base::C_AttlistC_Attlist --
CResource_Base::C_AttlistC_Attlist --
CResourceCompile_Base::C_AttlistC_Attlist --
CIntensity_Base::C_AttlistC_Attlist --
CLibra_result_Base::C_AttlistC_Attlist --
CLibra_summary_Base::C_AttlistC_Attlist --
CResponseFile_Base::C_AttlistC_Attlist --
CRootNamespace_Base::C_AttlistC_Attlist --
CMixture_model_Base::C_AttlistC_Attlist --
CRunPostBuildEvent_Base::C_AttlistC_Attlist --
CSchemaVersion_Base::C_AttlistC_Attlist --
CSecureScoping_Base::C_AttlistC_Attlist --
CService_Base::C_AttlistC_Attlist --
CMixturemodel_distribution_Base::C_AttlistC_Attlist --
CSignAssembly_Base::C_AttlistC_Attlist --
CSignManifests_Base::C_AttlistC_Attlist --
CSolutionDir_Base::C_AttlistC_Attlist --
CMod_aminoacid_mass_Base::C_AttlistC_Attlist --
CModification_info_Base::C_AttlistC_Attlist --
CSolutionExt_Base::C_AttlistC_Attlist --
CSolutionFileName_Base::C_AttlistC_Attlist --
CMsms_pipeline_analysis_Base::C_AttlistC_Attlist --
CMsms_run_summary_Base::C_AttlistC_Attlist --
CSolutionName_Base::C_AttlistC_Attlist --
CStartAction_Base::C_AttlistC_Attlist --
CSolutionPath_Base::C_AttlistC_Attlist --
CStartArguments_Base::C_AttlistC_Attlist --
CStartPage_Base::C_AttlistC_Attlist --
CParameter_Base::C_AttlistC_Attlist --
CStartProgram_Base::C_AttlistC_Attlist --
CStartupObject_Base::C_AttlistC_Attlist --
CNegmodel_distribution_Base::C_AttlistC_Attlist --
CStartURL_Base::C_AttlistC_Attlist --
CPeptideprophet_result_Base::C_AttlistC_Attlist --
CStartWorkingDirectory_Base::C_AttlistC_Attlist --
CSuiteName_Base::C_AttlistC_Attlist --
CSupportUrl_Base::C_AttlistC_Attlist --
CPeptideprophet_summary_Base::C_AttlistC_Attlist --
CTarget_Base::C_AttlistC_Attlist --
CTargetCulture_Base::C_AttlistC_Attlist --
CRoc_data_point_Base::C_AttlistC_Attlist --
CTargetExt_Base::C_AttlistC_Attlist --
CPosmodel_distribution_Base::C_AttlistC_Attlist --
CTargetFrameworkProfile_Base::C_AttlistC_Attlist --
CTargetFrameworkVersion_Base::C_AttlistC_Attlist --
CSample_enzyme_Base::C_AttlistC_Attlist --
CTargetName_Base::C_AttlistC_Attlist --
CTargetZone_Base::C_AttlistC_Attlist --
CSearch_database_Base::C_AttlistC_Attlist --
CTask_Base::C_AttlistC_Attlist --
CTask_Base::C_E_Task::C_Output::C_AttlistC_Attlist --
CTreatWarningsAsErrors_Base::C_AttlistC_Attlist --
CSearch_hit_Base::C_AttlistC_Attlist --
CTrustUrlParameters_Base::C_AttlistC_Attlist --
CSearch_result_Base::C_AttlistC_Attlist --
CTypeComplianceDiagnostics_Base::C_AttlistC_Attlist --
CUICulture_Base::C_AttlistC_Attlist --
CSearch_score_Base::C_AttlistC_Attlist --
CUpdateEnabled_Base::C_AttlistC_Attlist --
CUpdateInterval_Base::C_AttlistC_Attlist --
CSearch_summary_Base::C_AttlistC_Attlist --
CUpdateIntervalUnits_Base::C_AttlistC_Attlist --
CUpdateMode_Base::C_AttlistC_Attlist --
CUpdatePeriodically_Base::C_AttlistC_Attlist --
CSequence_search_constraint_Base::C_AttlistC_Attlist --
CUpdateRequired_Base::C_AttlistC_Attlist --
CUpdateUrl_Base::C_AttlistC_Attlist --
CUpgradeBackupLocation_Base::C_AttlistC_Attlist --
CSpecificity_Base::C_AttlistC_Attlist --
CSpectrum_query_Base::C_AttlistC_Attlist --
CUseApplicationTrust_Base::C_AttlistC_Attlist --
CUseOfAtl_Base::C_AttlistC_Attlist --
CUseOfMfc_Base::C_AttlistC_Attlist --
CTerminal_modification_Base::C_AttlistC_Attlist --
CXpressratio_result_Base::C_AttlistC_Attlist --
CUseVSHostingProcess_Base::C_AttlistC_Attlist --
CUsingTask_Base::C_AttlistC_Attlist --
CUTF8OutPut_Base::C_AttlistC_Attlist --
CXpressratio_summary_Base::C_AttlistC_Attlist --
CWarningsAsErrors_Base::C_AttlistC_Attlist --
CWarningLevel_Base::C_AttlistC_Attlist --
CWebPage_Base::C_AttlistC_Attlist --
CWebReferences_Base::C_AttlistC_Attlist --
CXpressratio_timestamp_Base::C_AttlistC_Attlist --
CWebReferenceUrl_Base::C_AttlistC_Attlist --
CWholeProgramOptimization_Base::C_AttlistC_Attlist --
CWin32ResourceFile_Base::C_AttlistC_Attlist --
CTool_Base::C_AttlistC_Attlist --
CVisualStudioProject_Base::C_AttlistC_Attlist --
CObjectUrl_Base::C_Data::C_BaseDataC_BaseData --
CID2_Request_Get_Blob_Info_Base::C_Blob_idId can be supplied by inner request
CSeqTree_node_Base::C_ChildrenC_Children --
CClCompile_Base::C_E_ClCompile::C_CompileAsManagedC_CompileAsManaged --
CVariation_Base::C_E_Somatic_origin::C_ConditionCondition related to this origin's type
CVariation_ref_Base::C_E_Somatic_origin::C_ConditionCondition related to this origin's type
CPC_ResultType_Base::C_ConstraintsAllowed Values, used for validating incoming data If type is "float"
CESearchResult_Base::C_Data::C_Info::C_ContentC_Content --
CModel_coordinate_set_Base::C_CoordinatesC_Coordinates --
CRs_Base::C_CreateDate the refsnp cluster was instantiated date the refsnp cluster was instantiated
CVariation_Base::C_DataC_Data --
CIdUrlSet_Base::C_DataC_Data --
CLinkSet_Base::C_DataC_Data --
CLinkSetDb_Base::C_DataC_Data --
CESearchResult_Base::C_DataC_Data --
CTranslationStack_Base::C_DataC_Data --
CSpelledQuery_Base::C_Data+
CESummaryResult_Base::C_DataC_Data --
CNormalize_Base::C_DataC_Data --
CObjectList_Base::C_DataAll Entrez databases may be configured to include LinkOut
CObjectUrl_Base::C_DataC_Data --
CRule_Base::C_DataC_Data --
CSubProvider_Base::C_DataC_Data --
CTolower_Base::C_DataC_Data --
CToupper_Base::C_DataC_Data --
CViewDescriptor_Base::C_Data
CUser_field_Base::C_DataField contents
CPluginArg_Base::C_DataC_Data --
CEntrez_general_Base::C_DataC_Data --
CSeq_annot_Base::C_DataC_Data --
CSeqEdit_Cmd_AddAnnot_Base::C_DataAnnotaion object to add
CSeqEdit_Cmd_ChangeSeqAttr_Base::C_DataC_Data --
CSeqEdit_Cmd_ChangeSetAttr_Base::C_DataC_Data --
CSeqEdit_Cmd_RemoveAnnot_Base::C_DataObject for deletion
CSeqEdit_Cmd_ReplaceAnnot_Base::C_DataC_Data --
CVariation_ref_Base::C_DataC_Data --
CSeq_submit_Base::C_DataC_Data --
CData_set_id_Base::C_Data_set_id_typeC_Data_set_id_type --
CData_set_id_Base::C_Data_set_id_uidsC_Data_set_id_uids --
CSeq_hist_Base::C_DeletedC_Deleted --
CSoapFault_Base::C_Detail
CContent_Base::C_E_Content::C_DGLCLGPIVC_DGLCLGPIV --
CPage_Base::C_E_Page::C_DGLCLGSCC_DGLCLGSC --
CResource_Base::C_E_Resource::C_DGLCLGSCC_DGLCLGSC --
CEmbeddedResource_Base::C_E_EmbeddedResource::C_DGLCLVSCLC_DGLCLVSCL --
C_DriverMgr
CEHistoryItem_Base::C_EC_E --
CTitle_Base::C_EC_E --
CLib_Base::C_EC_E --
CParameterGroup_Base::C_EC_E --
CProjectExtensions_Base::C_EC_E --
CGenetic_code_Base::C_EC_E --
CID2S_Bioseq_Ids_Base::C_EC_E --
CRs_Base::C_E_AlleleOriginC_E_AlleleOrigin --
CApad_Base::C_E_ApadC_E_Apad --
CRs_Base::C_E_BioSourceC_E_BioSource --
CCL_Base::C_E_CLNcbi: removed ReadLinesFromFile ncbi: removed RegisterAssembly ncbi: removed RemoveDir ncbi: removed RemoveDuplicates ncbi: removed RequiresFramework35SP1Assembly ncbi: removed ResolveAssemblyReference ncbi: removed ResolveComReference ncbi: removed ResolveKeySource ncbi: removed ResolveManifestFiles ncbi: removed ResolveNativeReference ncbi: removed ResolveNonMSBuildProjectOutput ncbi: removed SGen ncbi: removed SignFile ncbi: removed TlbImp ncbi: removed Touch ncbi: removed UnregisterAssembly ncbi: removed UpdateManifest ncbi: removed Vbc ncbi: removed VCBuild ncbi: removed Warning ncbi: removed WriteCodeFragment ncbi: removed WriteLinesToFile ncbi: removed XslTransformation ncbi: removed CodeAnalysis ==================== NATIVE CL/LINK TASKS ==========================
CClCompile_Base::C_E_ClCompileNcbi: removed COMFileReference ncbi: removed Xdcmake ncbi: removed Bscmake
CClInclude_Base::C_E_ClIncludeC_E_ClInclude --
CCompile_Base::C_E_CompileSource files for compiler
CCOMReference_Base::C_E_COMReferenceReference to a COM component
CVariation_Base::C_E_ConsequenceC_E_Consequence --
CVariation_ref_Base::C_E_ConsequenceC_E_Consequence --
CContent_Base::C_E_ContentFiles that are not compiled, but may be embedded or published
CCPPClean_Base::C_E_CPPClean======================== NATIVE TASKS ============================== ncbi: removed BSCMake
CCustomBuild_Base::C_E_CustomBuildNCBI modification begin
CCustomBuildStep_Base::C_E_CustomBuildStepC_E_CustomBuildStep --
CData_set_id_Base::C_Data_set_id_uids::C_E_EData_set_id_uidsC_E_EData_set_id_uids --
CLinkSet_Base::C_Data::C_IE::C_EL_2::C_EL::C_E_ELC_E_EL --
CEmbeddedResource_Base::C_E_EmbeddedResourceResources to be embedded in the generated assembly
CFilter_Base::C_FF::C_E_FFC_E_FF --
CFileAssociation_Base::C_E_FileAssociationC_E_FileAssociation --
CRs_Base::C_E_FrequencyC_E_Frequency --
CSubProvider_Base::C_Data::C_E_IEC_E_IE --
CIdCheckList_Base::C_II::C_E_IICmd=ncheck & lcheck & acheck
CImportGroup_Base::C_E_ImportGroup======================================================================================= Groups import definitions
CItem_Base::C_E_Item
CItemDefinitionGroup_Base::C_E_ItemDefinitionGroup=======================================================================================
CItemGroup_Base::C_E_ItemGroup======================================================================================= Groups item list definitions
CLIB_Base::C_E_LIBNcbi: removed GetOutputFileName ncbi: removed IsAssembly
CLink_Base::C_E_LinkC_E_Link --
CManifest_Base::C_E_ManifestNCBI modification end
CRs_Base::C_E_MergeHistoryC_E_MergeHistory --
CMidl_Base::C_E_MidlC_E_Midl --
CMSBuild_Base::C_E_MSBuild======================== TASKS ===================================== ncbi: removed AL ncbi: removed AspNetCompiler ncbi: removed AssignCulture ncbi: removed AssignProjectConfiguration ncbi: removed AssignTargetPath ncbi: removed AxImp ncbi: removed CallTarget ncbi: removed CombinePath ncbi: removed ConvertToAbsolutePath ncbi: removed Copy ncbi: removed CreateCSharpManifestResourceName ncbi: removed CreateItem ncbi: removed CreateProperty ncbi: removed CreateVisualBasicManifestResourceName ncbi: removed Csc ncbi: removed Delete ncbi: removed Error ncbi: removed Exec ncbi: removed FindAppConfigFile ncbi: removed FindInList ncbi: removed FindUnderPath ncbi: removed FormatUrl ncbi: removed FormatVersion ncbi: removed GenerateApplicationManifest ncbi: removed GenerateBootstrapper ncbi: removed GenerateDeploymentManifest ncbi: removed GenerateResource ncbi: removed GenerateTrustInfo ncbi: removed GetAssemblyIdentity ncbi: removed GetFrameworkPath ncbi: removed GetFrameworkSdkPath ncbi: removed GetReferenceAssemblyPaths ncbi: removed LC ncbi: removed MakeDir ncbi: removed Message ncbi: removed Move
CMt_Base::C_E_MtNcbi: removed MIDL
CNativeReference_Base::C_E_NativeReferenceReference to a native manifest file, or to a file that contains a native manifest
CNone_Base::C_E_NoneNcbi: removed ApplicationDefinition
CPad_Base::C_E_PadC_E_Pad --
CPage_Base::C_E_PageXAML files that are converted to binary and compiled into the assembly
CRs_Base::C_E_PhenotypeC_E_Phenotype --
CPostBuildEvent_Base::C_E_PostBuildEventNCBI modification end
CPreBuildEvent_Base::C_E_PreBuildEventC_E_PreBuildEvent --
CPreLinkEvent_Base::C_E_PreLinkEventC_E_PreLinkEvent --
CMarkov_chain_params_Base::C_E_ProbabilitiesC_E_Probabilities --
CProject_Base::C_ProjectLevelTagExceptTargetOrImportType::C_E_ProjectLevelTagExceptTargetOrImportTypeC_E_ProjectLevelTagExceptTargetOrImportType --
CProject_Base::C_ProjectLevelTagType::C_E_ProjectLevelTagTypeC_E_ProjectLevelTagType --
CProjectReference_Base::C_E_ProjectReferenceReference to another project
CPropertyGroup_Base::C_E_PropertyGroup======================================================================================= Groups property definitions
CPublishFile_Base::C_E_PublishFileNcbi: removed BootstrapperFile
CRC_Base::C_E_RCC_E_RC --
CReference_Base::C_E_Reference======================== ITEMS ===================================== Possible Types include SimpleItemType (no meta-data subelements), GenericItemType (any meta-data), or something more specific
CResource_Base::C_E_ResourceFile that is compiled into the assembly
CResourceCompile_Base::C_E_ResourceCompileC_E_ResourceCompile --
CVariation_Base::C_E_Somatic_originC_E_Somatic_origin --
CVariation_ref_Base::C_E_Somatic_originC_E_Somatic_origin --
CStrip_Base::C_E_StripC_E_Strip --
CSubs_Base::C_E_SubsC_E_Subs --
CSeq_code_table_Base::C_E_TableC_E_Table --
CTask_Base::C_E_Task=======================================================================================
CWebReferenceUrl_Base::C_E_WebReferenceUrlRepresents a reference to a web service
CLinkSet_Base::C_Data::C_IE::C_EL_2::C_ELC_EL --
CLinkSet_Base::C_Data::C_IE::C_EL_2C_EL_2 --
CAssay_Base::C_Method::C_EMethodC_EMethod --
CPermutator8b::C_Entry
CRNA_ref_Base::C_ExtC_Ext --
C_FA_Storage
CSeqEdit_Cmd_ReplaceAnnot_Base::C_Data::C_FeatC_Feat --
CFilter_Base::C_FFC_FF --
CViewDataLink_Base::C_Fingerprint
CTMgr_DisplayTrackRequest_Base::C_FlagsC_Flags --
CTMgr_ItemResolverRequest_Base::C_FlagsC_Flags --
CSeqTree_node_Base::C_Children::C_FootprintC_Footprint --
CVariation_Base::C_FrameshiftFrameshift-related info
CVariation_ref_Base::C_E_Consequence::C_FrameshiftSee http://www.hgvs.org/mutnomen/recs-prot.html
CCit_art_Base::C_FromJournal or book
CGnomon_param_Base::C_Gc_content_rangePercents
CSeqEdit_Cmd_ReplaceAnnot_Base::C_Data::C_GraphC_Graph --
CSeq_graph_Base::C_GraphC_Graph --
CRs_Base::C_HetC_Het --
CEPostResult_Base::C_HistoryC_History --
CReference_Base::C_E_Reference::C_HNFSAPERC_HNFSAPER --
CId_pat_Base::C_IdC_Id --
CPC_CompoundType_Base::C_IdCompound Namespace and ID (absent for "deposited" type compounds)
CID2S_Chunk_Data_Base::C_IdPlace of data to insert
CLinkSet_Base::C_Data::C_IEC_IE --
CIdCheckList_Base::C_IICmd=ncheck & lcheck & acheck
CESearchResult_Base::C_Data::C_InfoResponse tags
CProjectItem_Base::C_ItemItem we represent
CQueryHash::C_ListInserter
CBiostruc_feature_Base::C_LocationC_Location --
CSeqScanner::C_LoopImpl_ColorspAmbiguities
CSeqScanner::C_LoopImpl_ColorspNoAmbiguities
CSeqScanner::C_LoopImpl_Ncbi8naAmbiguities
CSeqScanner::C_LoopImpl_Ncbi8naNoAmbiguities
CVariation_Base::C_E_Consequence::C_Loss_of_heterozygosityC_Loss_of_heterozygosity --
CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosityC_Loss_of_heterozygosity --
CLinkSet_Base::C_Data::C_IE::C_EL_2::C_LWC_LW --
CAssay_Base::C_MethodC_Method --
CMaps_Base::C_MethodC_Method --
COrgName_Base::C_NameC_Name --
CTMgr_AssemblySpec_Base::C_NameC_Name --
CAuth_list_Base::C_NamesC_Names --
CHit::C_NextCtl
CCOMReference_Base::C_E_COMReference::C_NGVVLWIEC_NGVVLWIE --
CNativeReference_Base::C_E_NativeReference::C_NHC_NH --
CProjectReference_Base::C_E_ProjectReference::C_NPRSTOPEC_NPRSTOPE --
CSeqEdit_Cmd_AddAnnot_Base::C_Search_param::C_ObjUse an annotaion descriptor,
CCL_Base::C_E_CL::C_Output======================================================================================= Optional element specifying a specific task output to be gathered
CCPPClean_Base::C_E_CPPClean::C_Output======================================================================================= Optional element specifying a specific task output to be gathered
CLIB_Base::C_E_LIB::C_Output======================================================================================= Optional element specifying a specific task output to be gathered
CMSBuild_Base::C_E_MSBuild::C_Output======================================================================================= Optional element specifying a specific task output to be gathered
CMt_Base::C_E_Mt::C_Output======================================================================================= Optional element specifying a specific task output to be gathered
CRC_Base::C_E_RC::C_Output======================================================================================= Optional element specifying a specific task output to be gathered
CTask_Base::C_E_Task::C_Output======================================================================================= Optional element specifying a specific task output to be gathered
CGnomon_param_Base::C_ParamC_Param --
CClCompile_Base::C_E_ClCompile::C_PrecompiledHeaderC_PrecompiledHeader --
CProject_Base::C_ProjectLevelTagExceptTargetOrImportTypeC_ProjectLevelTagExceptTargetOrImportType --
CProject_Base::C_ProjectLevelTagTypeC_ProjectLevelTagType --
CBiostruc_feature_Base::C_PropertyC_Property --
CLinkSetDbHistory_Base::C_QIC_QI --
CExchangeSet_Base::C_QueryC_Query --
C_RA_Storage
CLength_distribution_params_Base::C_RangeC_Range --
CInt_fuzz_Base::C_RangeMax to min
CRegion_pntrs_Base::C_RegionC_Region --
CID2_Reply_Base::C_ReplyReply data moved at the end to make it easier to construct the reply data manually from precalculated data
CID2_Request_Base::C_RequestC_Request --
CID2_Request_Get_Blob_Info_Base::C_Blob_id::C_ResolveGenerate blob-ids from request
CTrSequence< bitst, bitsc >::C_ReverseIterator< Item >
CObjectUrl_Base::C_Data::C_BaseData::C_RuleEnd of SubObjectSelector group
CObjectUrl_Base::C_Data::C_RuleC_Rule --
C_SA_Storage
CQueryHash::C_ScanCallback< Callback >
CSeqScanner::C_ScanImpl_Base
CCompile_Base::C_E_Compile::C_SDADLDVCVC_SDADLDVCV --
CSeqEdit_Cmd_AddAnnot_Base::C_Search_paramA search creteria
CSeq_align_Base::C_SegsAlignment data
CLink_Base::C_SelectorC_Selector --
CDelta_item_Base::C_SeqC_Seq --
CBiostruc_seqs_aligns_cdd_Base::C_Seq_align_dataC_Seq_align_data --
CRs_Base::C_SequenceC_Sequence --
CSs_Base::C_SequenceC_Sequence --
CGC_Replicon_Base::C_SequenceSequence(s) representing this molecule in the case of 2L and 2R - the molecule is represented by several sequences, and there is no seq-id of "chr 2" as a whole
CVariation_Base::C_Data::C_SetSet of related Variations
CVariation_ref_Base::C_Data::C_SetSet of related Variations
CAssembly_Base::C_SnpStatC_SnpStat --
CSeqTestResults_Base::C_SourceC_Source --
CExchangeSet_Base::C_SourceDatabaseC_SourceDatabase --
CAffil_Base::C_StdStd representation
CExchangeSet_Base::C_SummaryC_Summary --
CSurface_coordinates_Base::C_SurfaceC_Surface --
CProject_Base::C_TargetOrImportTypeMust be at least one Target or Import tag
CAssay_Base::C_TaxonomyC_Taxonomy --
CTarget_Base::C_TPIC_TPI --
CRs_Base::C_UpdateMost recent date the cluster was updated (member added or deleted) most recent date the cluster was updated (member added or deleted)
CWebReferenceUrl_Base::C_E_WebReferenceUrl::C_URUSCCCC_URUSCCC --
CRs_Base::C_ValidationC_Validation --
CPC_AssayData_Base::C_ValueAssay Result, must be the same type as defined for TID
CPC_InfoData_Base::C_ValueData Value
CScore_Base::C_ValueC_Value --
CT3StatusFlags_Base::C_ValueC_Value --
CFileAssociation_Base::C_E_FileAssociation::C_VDDPC_VDDP --
CBiostruc_source_Base::C_Version_of_databaseC_Version_of_database --
CPublishFile_Base::C_E_PublishFile::C_VGIIPC_VGIIP --
C_xDriverMgr
CAA
CAbstractProjectItem
CAbstractProjectItem_BaseCAbstractProjectItem_Base --
CGenBankLoadOptionPanel::CAccDescriptor
CAccelTableCAccelTable - Accelerator Table
CAcceptRequest
CAccessionItem
CAccPatternCounterAccession naming patterns; find ranges for consequtive digits
CAccValidator
CAce2AsnApp
CBDB_Cache::CacheKeyCache accession for internal in-memory storage
CAction_choiceCAction_choice --
CAction_choice_BaseCAction_choice_Base --
CActiveObject
CAdapterSearchApplication
CAdd_descriptor_list_actionCAdd_descriptor_list_action --
CAdd_descriptor_list_action_BaseCAdd_descriptor_list_action_Base --
CAdd_file_actionCAdd_file_action --
CAdd_file_action_BaseCAdd_file_action_Base --
CAddBioseqChecker
CAddCitSubForUpdate
CTextPanel::CAddControl
CAddDefLineDlg
CAddDescr_EditCommand< TEditHandle >
CAddFeatChecker
CAddIdChecker
CAddLocs_local
CAddQuickLaunchDlg
CAddStructuredCommentKeyword
CAddToNodeSetCallback
CAddTranslExceptDlg
CAdjust_features_for_gaps_actionCAdjust_features_for_gaps_action --
CAdjust_features_for_gaps_action_BaseCAdjust_features_for_gaps_action_Base --
CAdminCmdProcessor
CAdvancedFileInputCAdvancedFileInput
CAECR_actionCAECR_action --
CAECR_action_BaseCAECR_action_Base --
CAECRDlg
CAECRParse_actionCAECRParse_action --
CAECRParse_action_BaseCAECRParse_action_Base --
CAffected_channelCAffected_channel --
CAffected_channel_Base============================================ This section is mapped from module "pepXML" ================================================= channel recipient
CAffil.hpp User-defined methods of the data storage class
CAffil_BaseCAffil_Base --
CAffilEditor
CAgpCompSpanSplitter
CAgpconvertApplication
CAgpConverter
CAgpErr
CAgpErrExCorrectly print multiple errors and warnings on consequitive lines; suppress undesired or higly repetitive messages; calculate total counts for each type of error
CAgpExporter
CAgpExporterFactory
CAgpExportJobCAgpExportJob
CAgpExportPage
CAgpExportParams
CAgpFastaComparator
CAgpLoaderCAgpLoader
CAgpLoadPage
CAgpLoadParams
CAgpObjectLoaderC5ColObjectLoader
CAgpReaderDetects scaffolds, object boundaries, errors that involve 2 consecutive lines, and is intended as a superclass for more complex readers
CAgpRenumber
CAgpRowA container for both the original string column values (Get*() methods) and the values converted to int, char, bool types (member variables)
CAgpToSeqEntryThis class is used to turn an AGP file into a vector of Seq-entry's
CAgpValidateApplication
CAgpValidateReader
CAgpWriteComponentIdMapper
CAgpwriteProcess
CAgressiveResizeStrategy
CAlgoAlignException
CAlgoAlignUtilException
CAlgoPlugin_CreateTrackCreatorDialog
CAlgorithm_typeCAlgorithm_type --
CAlgorithm_type_BaseCAlgorithm_type_Base --
CAlgoToolManagerBaseCAlgoToolManagerBase This is base class for simple algorithmic tool managers
CAlgoToolManagerParamsPanelCAlgoToolManagerParamsPanel
CAli
CAliasBase< TPrim >Alias wrapper templates
CAliasRefTypeStrings
CAliasTest
CAliasTypeInfo
CAliasTypeInfoFunctions
CAliasTypeStrings
CAliCreator
CAlign_annotCAlign_annot --
CAlign_annot_BaseCAlign_annot_Base --
CAlign_annot_setCAlign_annot_set --
CAlign_annot_set_BaseCAlign_annot_set_Base --
CAlign_CICAlign_CI --
CAlign_defCAlign_def --
CAlign_def_BaseCAlign_def_Base --
CAlign_statsCAlign_stats --
CAlign_stats_BaseCAlign_stats_Base --
CAlignCigarScore
CAlignCleanupClass CAlignCleanup implements an alignment cleanup utility based on the C++ alignment manager
CAlignCollapser
CAlignCommon
CAlignCompare
CAlignDataSource
CAlignDataSourceException
CAlignDepthFilter
CAlignDistGraph
CAlignedFeatureGraphCFeatureGraph
CAlignedGisClass to contain the gis of the aligned sequences
CAligner
CAligner_fast
CAligner_HSP
CAligner_SW
CAligner_SW_Base
CAlignerBase
CAlignFilterCAlignFilter exposes a query language for inspecting properties and scores placed on Seq-align objects
CAlignFindContext
CAlignFormatUtilThis class contains misc functions for displaying BLAST results
CAlignGlyph
CAlignGroup
CAlignInfo
CAlignMap
CAlignMarkHandlerCAlignMarkHandler manages handling and editing of marks on alignments
CAlignmentBasedRowSelector
CAlignmentConfigFile Description:
CAlignmentItem
CAlignmentRefiner
CAlignmentSmear
CAlignmentTrackCAlignmentTrack --
CAlignmentTrackFactoryCAlignmentTrackFactory
CAlignModel
CAlignMultipleDemoAppDerive our application class from CwxNCBIApp and use it together with standard CNCBIwxApplication
CAlignMultipleDemoDlg
CAlignNeedlemanWunschPanel
CAlignPackageDeclare the Package Object
CAlignParam
CAlignProjectItemExtension
CAlignRange< Position >CAlignRange Represents an element of pairwise alignment of two sequences
CAlignRangeCollection< TAlnRange >Class CAlignRangeCollection<TAlignRange> represent a sorted collection of TAlignRange
CAlignRangeCollException
CAlignRangeCollExtender< TColl >CAlignRangeCollExtender this is an adapter for a collection that perfroms some of the operations faster due to an additional index built on top of the collection
CAlignResultsSet
CAlignRow
CAlignRowGraphContCAlignRowGraphCont
CAlignSeqTableModelCAlignSeqTableModel
CAlignShadow
CAlignSmearGlyph
CAlignSort
CAlignSpanViewCAlignSpanView
CAlignSpanViewFactoryCAlignSpanViewFactory
CAlignStrandSorterCAlignStrandSorter is a sorter used to sort alignments based on alignment strand
CAlignTabExporter
CAlignTabExporterFactory
CAlignTabExportJobCAlignTabExportJob
CAlignTabExportPage
CAlignTabExportPage2
CAlignTabExportParams
CAlignTest
CAliPiece
CAliToSeq_align
CAsyncCall::Call
CAllOtherFeaturesTrackFile Description:
CAllOtherFeaturesTrackFactoryCAllOtherFeaturesTrackFactory
CAlnAsnReaderHelper class for reading seq-align objects from a CObjectIStream
CAlnBuildApp
CAlnMap::CAlnChunk
CAlnChunkSegmentCAlnChunkSegment - IAlnSegment implementation for CAlnMap::CAlnChunk
CAlnMap::CAlnChunkVec
CAlnContainerCSeq_align container
CAlnContentEvtHandler
CAlnError
CAlnException
CAlnGraphic
CAlnIdMap< _TAlnVec, TAlnSeqIdExtract >Container mapping seq-aligns to vectors of participating seq-ids
CSGAlnQualityScore::CAlnInfo
CAlnMap
CAlnMapPrinter
CAlnMix
CAlnMixMatch
CAlnMixMatches
CAlnMixMerger
CAlnMixSegment
CAlnMixSegments
CAlnMixSeq
CAlnMixSequences
CAlnMixStarts
CAlnMrgApp
CAlnMrgTaskProgressCallback
CAlnMultiCGIApplication
CAlnMultiCGIExceptionNumber of gradient colors in alignment
CAlnMultiDSBuilder
CAlnMultiHeaderCAlnMultiHeader
CAlnMultiHeaderHandlerCAlnMultiHeaderHandler
CAlnMultiModelClass CAlnMultiModel - represents a visual model of an alignment
CAlnMultiModelFactoryCAlnMultiModelFactory - a factory to separate creation of the model from widget
CAlnMultiPaneClass CAlnMultiPane
CAlnMultiRendererClass CAlnMultiRenderer - renders multiple alignment represented by IAlnMultiRendererContext (the Model)
CAlnMultiWidgetClass CAlnMultiWidget
CAlnPos_CI
CAlnPropertiesDlgCwxAlnPropertiesDlg
CAlnReaderClass CAlnReader supports importing a large variety of text-based alignment formats into standard data structures
CAlnRowStateCAlnRowState - implements state management for Align Row
CAlnScoringMethodSelector
CAlnSeqIdDefault IAlnSeqId implementation based on CSeq_id_Handle
CAlnSeqIdConverter< TAlnSeqId >Default seq-id converter
CAlnSeqIdsExtract< TAlnSeqId, TIdConverter >IAlnSeqId extracting functor
CAlnSpanSettingsDlg
CAlnSpanVertModel
CAlnSpanWidget
CAlnStatConfig
CAlnStatGlyph
CAlnStats< _TAlnIdVec >Helper class which collects seq-align statistics: seq-ids participating in alignments and rows, potential anchors etc
CContigAssembly::CAlnStats
CTableDataAlnSummary::CAlnSummary
CAlnSummaryView
CAlnSummaryViewFactoryCAlnSummaryViewFactory
CAlnTableDS
CAlnTableWidget
CAlnTestApp
CAlnUserOptionsOptions for different alignment manager operations
CAlnVec
CAlnVecGraphicDataSourceCAlnVecGraphicDataSource - implementation of CAlnGraphicDataSource for CAlnVec-based alignments
CAlnVecIteratorCAlnVecIterator - IAlnSegmentIterator implementation for CAlnMap::CAlnChunkVec
CAlnVecMultiDataSourceCAlnVecMultiDataSource - implementation of IAlnMultiDataSource for CAlnVec-based alignments
CAlnVecPrinter
CAlnVecRowClass CAlnVecRow - implementation of IAlignRow for CAlnVec-based alignments
CAlnVecRowHandleCAlnVecRowHandle is inherited from IAlignRowHandle and represents a row of CAlnVec-based alignment
CAlnVwrApp
CAlternate_conformation_idCAlternate_conformation_id --
CAlternate_conformation_id_BaseCAlternate_conformation_id_Base --
CAlternate_conformation_idsCAlternate_conformation_ids --
CAlternate_conformation_ids_BaseAn alternate conformation id is optionally associated with each coordinate
CAlternative_proteinCAlternative_protein --
CAlternative_protein_BaseOther protein in search database that contains peptide
CAltitudePanel
CAltValidator
CAlwaysFailMockBlastSeqSrcMock BlastSeqSrc implementation which always fails
CAmbigDataBuilderEncode ambiguities in blast database format
CAmbiguiousTypes
CAmbiguityContext
CAmbiguousRegionAmbiguous portion of a sequence
CAminoacid_modificationCAminoacid_modification --
CAminoacid_modification_BaseModified aminoacid, static or variable
CAminoAcidCharToSymbol
CAnalysis_resultCAnalysis_result --
CAnalysis_result_BaseCAnalysis_result_Base --
CAnalysis_summaryCAnalysis_summary --
CAnalysis_summary_BaseSummary of analysis subjected to run(s)
CAnalysis_timestampCAnalysis_timestamp --
CAnalysis_timestamp_BaseReference for analysis applied to current run (time corresponds with analysis_summary/, id corresponds with analysis_result/)
CAnalyzeShiftApp
CAnchoredAlnQuery-anchored alignment can be 2 or multi-dimentional
CAnisotropic_temperature_factorsCAnisotropic_temperature_factors --
CAnisotropic_temperature_factors_BaseCAnisotropic_temperature_factors_Base --
CAnnot_CICAnnot_CI --
CAnnot_Collector
CAnnot_descrCAnnot_descr --
CAnnot_descr_BaseCAnnot_descr_Base --
CAnnot_idCAnnot_id --
CAnnot_id_BaseCAnnot_id_Base --
CAnnotationASN1
CAnnotCompare
CAnnotCompare_AlignDSCAnnotCompare_AlignDS
CAnnotCompare_LocationDSCAnnotCompare_LocationDS
CAnnotCompareDSCAnnotCompareDS
CAnnotCompareViewCAnnotCompareView
CAnnotCompareViewFactoryCAnnotCompareViewFactory
CAnnotCompareWidgetCAnnotCompareWidget
CAnnotWriteConfig::CAnnotConfigSettings
CAnnotConfigUtils
CAnnotdescCAnnotdesc --
CAnnotdesc_BaseCAnnotdesc_Base --
CAnnotExceptionAnnotation iterators exceptions
CAnnotMapperExceptionSeq-loc and seq-align mapper exceptions
CAnnotMapping_Info
CAnnotMappingCollector
CAnnotMetaDataData structure for holding meta information for an annotaion
CAnnotMetaDataJobCAnnotMetaDataJob
CAnnotMetaDataJobResultCAnnotMetaDataJobResult
CAnnotName
CAnnotObject_Info
CAnnotObject_Less
CAnnotObject_LessReverse
CAnnotObject_Ref
CAnnotObject_SplitInfo
CAnnotObjectType_Less
CAnnotPieces
CAnnotReadConfig
CAnnotSearchLimitException
CAnnotType_Index
CAnnotTypes_CI
CAnnotWriteConfig
CAnnotWriterApp
CAntiCodonColumn
CAntigenic
CAnyContentDataType
CAnyContentFunctions
CAnyContentObjectSerializable object that stores any combination of parsable data
CAnyContentTypeStrings
CAnyIntron
CAnyTypeChoice
CAnyTypeClassInfo
CAnyTypeSource
CApadCApad --
CApad_BaseCApad_Base --
NWinHook::CApiHookMgrClass CApiHookMgr
CApp
CAppDialogs
CAppendModToOrg
CAppendModToOrgDlg
CAppExceptionCAppException --
CAppExplorerCmdHandlerCAppExplorerCmdHandler - handles wxWidget commands and translates them into calls to CAppExplorerService IExplorerItemSelectionSource provides selection for the commands
CAppExplorerDataCAppExplorerData - data descriptor for use with CAppExplorerDataObject
CAppExplorerDataObjectCAppExplorerDataObject - wxDataObject for use with CAppExplorerService
CAppExplorerItemCmdContributorCAppExplorerItemCmdContributor - an extension contributing App Explorer Service commands
CAppExplorerServiceCAppExplorerService - TODO comments
CAppHitFilter
CAppHitFilterException
CAppInfoClass CAppInfo defines an interface for application registration information
CAppJobCAppJob - default implementation of IAppJob that could be used as a base class
CAppJobDispatcherCAppJobDispatcher
CAppJobErrorCAppJobError Default implementation for IAppJobError - encapsulates a text error message
CAppJobEventTranslatorCAppJobEventTranslator Standard Listener that generates notification events
CAppJobExceptionIAppJobListener Interface for components that need to be notified about changes in Jobs
CAppJobExecuteUnit
CAppJobNotificationCAppJobNotification Notification send by CAppJobEventTranslator
CAppJobProgressCAppJobProgress Default implementation for IAppJobProgress - the class encapsulates a text message and a numeric value indicating the progress of the task normalized in [0.0, 1.0] range (0.0 - just started, 1.0 - 100% done)
CAppJobTaskCAppJobTask CAppJobTask is an adapter that allows for running IAppJobs as Tasks in App Task Service
CAppJobTestApplicationCAppJobTestApplication
CAppJobTextResultCAppJobTextResult Default implementation for result object - encapsulates a text error message
CApply_actionCApply_action --
CApply_action_BaseCApply_action_Base --
CApply_feature_actionCApply_feature_action --
CApply_feature_action_BaseCApply_feature_action_Base --
CApply_table_actionCApply_table_action --
CApply_table_action_BaseCApply_table_action_Base --
CApply_table_extra_dataCApply_table_extra_data --
CApply_table_extra_data_BaseCApply_table_extra_data_Base --
CApplyEditconvertPanel
CApplyObject
CApplyRNAITSDlg
CApplySubpanel
CAppNWA
CAppNWAException
CAppOptionsDlg
CAppPackagesDlg
CAppPopupClass CAppPopup allows applications to be launched based on standard registered types
CAppRegistryClass CAppRegistry defines the registry of application information for automated application link-outs
CAppTaskCAppTask - default implementation of IAppTask, use it as a base class for custom tasks
CAppTaskServiceCAppTaskService - Application Task Service
CAppTaskServiceEventCAppTaskServiceEvent
CAppTaskServiceExceptionCAppTaskServiceException
CArchiveCArchive - base class for file- or memory-based archives
CArchiveEntryInfoCArchiveEntryInfo class
CArchiveExceptionCArchiveException --
CArchiveFileCArchiveFile -- file-based archive
CArchiveMemoryCArchiveMemory -- memory-based archive
CArchiveZipCArchiveZip -- implementation of IArchive interface for ZIP-archives
CArg_Boolean
CArg_DataSize
CArg_DateTime
CArg_Dir
CArg_Double
CArg_ExcludedValue
CArg_Flag
CArg_InputFile
CArg_Int8
CArg_Integer
CArg_IOFile
CArg_Ios
CArg_NoValue
CArg_OutputFile
CArg_String
CArgAllowCArgAllow --
CArgAllow_DoublesCArgAllow_Doubles --
CArgAllow_Int8sCArgAllow_Int8s --
CArgAllow_IntegersCArgAllow_Integers --
CArgAllow_RegexpCArgAllow_Regexp --
CArgAllow_StringCArgAllow_String --
CArgAllow_StringsCArgAllow_Strings --
CArgAllow_SymbolsCArgAllow_Symbols --
CArgAllowGeneticCodeIntegerAuxiliary class to validate the genetic code input
CArgAllowIntegerSet
CArgAllowStringSet
CArgAllowValuesBetweenClass to constrain the values of an argument to those in between the values specified in the constructor
CArgAllowValuesGreaterThanOrEqualClass to constrain the values of an argument to those greater than or equal to the value specified in the constructor
CArgAllowValuesLessThanOrEqualClass to constrain the values of an argument to those less than or equal to the value specified in the constructor
CArgArray
CArgC
CArgDescCArgDesc --
CArgDesc_agp_validate
CArgDesc_Alias
CArgDesc_Flag
CArgDesc_Key
CArgDesc_KeyDef
CArgDesc_KeyOpt
CArgDesc_NameOnly
CArgDesc_Opening
CArgDesc_Pos
CArgDesc_PosDef
CArgDesc_PosOpt
CArgDescDefault
CArgDescMandatory
CArgDescOptional
CArgDescriptionsCArgDescriptions --
CArgDescSynopsis
CArgErrorHandlerCArgErrorHandler --
CArgExceptionCArgException --
CArgHelpExceptionCArgHelpException --
CArgsCArgs --
CArgumentsExceptionCArgumentsException --
CArgValueCArgValue --
pythonpp::CArithmeticError
CArrayHolderHelper class for holding and correct destruction of static array copy
CArrayString< STR_SIZE >Fixed-buffer string type
CArticleIdCArticleId --
CArticleId_BaseArticle Ids can be many ids for an article
CArticleIdSetCArticleIdSet --
CArticleIdSet_BaseCArticleIdSet_Base --
CAsapratio_contributionCAsapratio_contribution --
CAsapratio_contribution_BaseCAsapratio_contribution_Base --
CAsapratio_lc_heavypeakCAsapratio_lc_heavypeak --
CAsapratio_lc_heavypeak_BaseCAsapratio_lc_heavypeak_Base --
CAsapratio_lc_lightpeakCAsapratio_lc_lightpeak --
CAsapratio_lc_lightpeak_BaseCAsapratio_lc_lightpeak_Base --
CAsapratio_peptide_dataCAsapratio_peptide_data --
CAsapratio_peptide_data_BaseCAsapratio_peptide_data_Base --
CAsapratio_resultCAsapratio_result --
CAsapratio_result_BaseASAPRatio quantitation results for search hit
CAsapratio_summaryCAsapratio_summary --
CAsapratio_summary_BaseQuantitation
CAsapratio_timestampCAsapratio_timestamp --
CAsapratio_timestamp_BaseCAsapratio_timestamp_Base --
CAsBodyDiagFactory
CAscii85
CAsn2Asn
CAsn2AsnThread
CAsn2FastaApp
CAsn2FlatApp
CAsn2GffApp
CAsnBinTraits class for binary ASN.1
CAsnBinaryDefs
CAsnBinCompressedTraits class for compressed binary ASN.1 streams
CAsnBinUncompressedTraits class for uncompressed binary ASN.1 streams
CAsnBioContext
CAsnBioContextContainer
CAsnBlockEndItem
CAsnConverter< TCpp, TC >
CAsnElementBlockCollapsed
CAsnElementBlockStart
CAsnElementItem
CAsnElementPrimitive
CAsnExporter
CAsnExporterFactory
CAsnExportJobCAsnExportJob
CAsnExportPage
CAsnExportParams
CASNFormatLoadManagerCASNFormatLoadManager
CAsnHeaderItem
CAsnHeaderPrimitive
CAsnObjectLoaderCAsnObjectLoader
CAsnOctetStringBlock
CAsnRetrieveJob
CAsnSizer
CAsnStyles
CAsnvalApp
CAgpconvertApplication::CAsnvalRunner
CAsnViewContext
CAsnWriteNode
CAspNAsp-N, Nterm of D
CAspNDEEMSEnzymes_aspn_de Asp-N that cuts at D and E
CAssayCAssay --
CAssay_BaseCAssay_Base --
CAssemblyCAssembly --
CAssembly_BaseA collection of genome sequence records (curated gene regions (NG's), contigs (NWNT's) and chromosomes (NC/AC's) produced by a genome sequence project
CAssemblyInfo
CAssemblyLoadWizard::CAssemblyListPage
CAssemblyListPanel
CAssemblyLoadWizard
CAssemblyObjectLoaderCAssemblyObjectLoader
CAssemblyParserExceptionSeq-loc and seq-align mapper exceptions
CAssemblyProgramPanel
CAssemblySelPanel
CAssemblyTermCompleter
CAssemblyTrackFieldManager
CAssemblyTrackingListPanel
CAssemblyTrackingPanel
pythonpp::CAssertionError
CAssignColumnValueDlg
CAssignFeatureId
CBioTree< TBioNode >::CAssignTreeFuncFunctor to reset tree pointer in all nodes
CBDB_MergeStoreAsync< BStore >::CAsyncIAsync implementation
CBDB_MergeBlobWalkerAsync< BF >::CAsyncIAsync implementation
CAsyncCallClass for GUI asyncronous execition
CAsyncCallDlg
CAsyncDiagHandler
CAsyncDiagThread
CAsyncMemberCall
CAsyncObjConvert
CAsyncObjConvert2
CAtomCAtom --
CAtom_BaseAtoms in residue graphs are defined by elemental symbols and names
CAtom_idCAtom_id --
CAtom_id_BaseCAtom_id_Base --
CAtom_pntrCAtom_pntr --
CAtom_pntr_BaseAtoms, residues and molecules within the current biostruc are referenced by hierarchical pointers
CAtom_pntr_setCAtom_pntr_set --
CAtom_pntr_set_BaseCAtom_pntr_set_Base --
CAtom_pntrsCAtom_pntrs --
CAtom_pntrs_BaseCAtom_pntrs_Base --
CAtomic_coordinatesCAtomic_coordinates --
CAtomic_coordinates_BaseLiteral atomic coordinate values give location, occupancy and order parameters, and a pointer to a specific atom defined in the biostruc graph
CAtomic_occupanciesCAtomic_occupancies --
CAtomic_occupancies_BaseCAtomic_occupancies_Base --
CAtomic_temperature_factorsCAtomic_temperature_factors --
CAtomic_temperature_factors_BaseCAtomic_temperature_factors_Base --
CAtomicCounterCAtomicCounter --
CAtomicCounter_WithAutoInitCAtomicCounter_WithAutoInit --
CAttachAnnot_EditCommand< Annot >
CAttachedHandles
CAttachEntry_EditCommand< Entry >
CAttribFloatMenuItemClass CAttribFloatMenuItem
CAttribIntMenuItemClass CAttribIntMenuItem
CAttribMenuClass CAttribMenuItem
CAttribMenuInstanceSimple singleton class to allow multiple classes to share the same menu
CAttribMenuItemClass CAttribMenuItem
CAttribStringsMenuItemClass CAttribStringsMenuItem
CAttribTableColumnIdPanel
CAttribTableDelimitersPanel
pythonpp::CAttributeError
CAttrListParser
CAttrRangeCollection< Attr, Position >
CAuth_list.hpp User-defined methods of the data storage class
CAuth_list_BaseAuthorship Group
CAuthor
CAuthor_BaseCAuthor_Base --
CAuthor_fix_actionCAuthor_fix_action --
CAuthor_fix_action_BaseCAuthor_fix_action_Base --
CAuthorAffiliationPanel
CAuthorEditor
CAuthorizedAccessPanel
CAuthorNamesPanel
CAutoAddDesc
CAutoColValidatoraccession
CAutoColValidatorboolean
CAutoColValidatorcountry
CAutoColValidatordate
CAutoColValidatorgenome
CAutoColValidatorhaplotype
CAutoColValidatorisolation_source
CAutoColValidatorlineage
CAutoColValidatororgmod
CAutoColValidatororgname
CAutoColValidatororigin
CAutoColValidatorseqid
CAutoColValidatorserotype
CAutoColValidatorstrain
CAutoColValidatorsubsource
CAutoColValidatorsubtype
CAutoColValidatortaxid
CAutoCompleteComboCAutoCompleteComboBox
CAutoCompleteTextCtrlCAutoCompleteComboBox
CAutoDef
CAutodef_actionCAutodef_action --
CAutodef_action_BaseCAutodef_action_Base --
CAutoDefAvailableModifier
CAutoDefDemo
CAutodefDlg
CAutoDefExonListClause
CAutoDefFakePromoterClause
CAutodefFeatClausePanel
CAutoDefFeatureClause
CAutoDefFeatureClause_Base
CAutoDefGeneClusterClause
CAutoDefIntergenicSpacerClause
CAutodefJobCAutodefJob
CAutoDefMiscCommentClause
CAutoDefMobileElementClause
CAutoDefModifierCombo
CAutoDefNcRNAClause
CAutodefOptFeatPanel
CAutodefOrgPanel
CAutodefParamsPanel
CAutoDefParsedClause
CAutoDefParsedIntergenicSpacerClause
CAutoDefParsedRegionClause
CAutoDefParsedtRNAClause
CAutoDefPromoterClause
CAutoDefSatelliteClause
CAutoDefSourceDescription
CAutoDefSourceGroup
CAutoDefSourceModifierInfo
CAutodefToolManagerCAutodefToolManager
CAutoDefUnknownGeneList
CAutoDiscClass
CAutoEnvironmentVariableCAutoEnvironmentVariable --
CAutofix_actionCAutofix_action --
CAutofix_action_BaseCAutofix_action_Base --
CAutogeneratedCleanupThis file was generated by application DATATOOL
CAutogeneratedExtendedCleanupThis file was generated by application DATATOOL
CAutoInitDesc< _T >
CAutoInitPtr< T >CAutoInitPtr<>::
CAutoInitPtr_BaseCAutoInitPtr_Base::
CAutoInitRef< T >CAutoInitRef<>::
CAutomaticGenCodeSingletonInitializes and uninitializes the genetic code singleton as if it was an automatic variable (to facilitate use in our unit tests and in the CBlastOptions object)
CAutomationException
CAutomationObject
CAutomationProc
CAutoNcbiConfigFileAuxiliary class to write temporary NCBI configuration files in the local directory for the purpose of testing the CBlastScopeSource configuration class via this file (and override any other installed NCBI configuration files)
CAutoOutputFileResetAuxiliary class to store the name of an output file, which is reset every time its GetStream method is invoked
CAutoPointerTypeInfo
CAutoPtrTypeInfo< Data >
CAutoRegistrarAuxiliary class to register the BLAST database data loader of choice (information provided in the constructor) and deactivate it on object destruction
CAutoTrans
CThreadInPool< TRequest >::CAutoUnregGuard
CThreadInPool_ForServer::CAutoUnregGuard
CAuxiliaryManagedWrapperGeneratorToolDummyImpl
CAVApp
CAxisAreaClass CAxisArea
CAxisRendererClass CAxisRenderer
CBackgroundHost
CNWAligner::CBacktraceMatrix4
CSeqportUtil::CBadIndex
CSourceModParser::CBadModError
CBadResiduesException
CSeqportUtil::CBadSymbol
CSeqportUtil::CBadType
CBam2GraphApp
CBam2Seq_graphCBam2Seq_graph
CBAM_DataLoaderCF
CBamAlignIterator
CBAMBlobId
CBamCoverageGraphPanel
CBAMDataLoader
CBAMDataLoader_Impl
CBamDb
CBamDSEvtHandlerCBamDSEvtHandler - wxEvtHandler-derived adapter for Bam data source
CBamException
CBamFileAlign
CBamFileInfo
CBamIndexingPanel
CBamLoadingJobCBamLoadingJob
CBamLoadOptionPanelCBamLoadOptionPanel
CBamMgr
CBamRcFormatter
CBamRef< Object >
CBamRefSeqChunkInfo
CBamRefSeqInfo
CBamRefSeqIterator
CBamRefTraits< Object >
CBamRefTraits< AlignAccessAlignmentEnumerator >
CBamRefTraits< AlignAccessRefSeqEnumerator >
CBamRefTraits< const AlignAccessDB >
CBamRefTraits< const AlignAccessMgr >
CBamRefTraits< const BAMAlignment >
CBamRefTraits< const BAMFile >
CBamString
CBamUIDataSourceCBamUIDataSource
CBamUIDataSourceTypeCBamUIDataSourceType
CBamUILoadManager
CBandAligner
pythonpp::bind::CBase
CBase64BinaryDataType
CBaseAddressCBaseAddress --
CBaseAddress_Base======================== PROPERTIES ===================================== Possible Types include StringPropertyType (text with no subelements), GenericPropertyType (any content), or something more specific
CBaseClusterer
impl::CBaseCmd
CBaseCountItem
CBaseNRCriteria
CBaseTextOStream
CBaseURLCBaseURL --
CBaseURL_BaseURL value from dbSNP_main.BaseURL links table
CBasicFastaWrapperConcrete implementations of the CFastaIOWrapper virtual class
CBasicRelation
CBatch
CBatchFeatJobCBatchFeatJob: a job class for loading annotated features from a given a set of sequences within the corresponding visible ranges
CBatchJobResultCBatchJobResult -- the data structure holding the seqgraphic job results for a batch job processing
CBatchSizeMixerClass to mix batch size for BLAST runs
CBatchSubmitAttrParser
CBBox< N >
CBDB_BLobDemo1BLob Demo application
CBDB_BlobDeMuxVolume split BLOB demultiplexer
CBDB_BlobDeMux_RoundRobinBLOB demultiplexer implements round-robin volume rotation
CBDB_BlobDeMuxPersistentSplit demux which can save and load state into a file Stateful (persistent) class
CBDB_BlobDeMuxSplitBase class for page-split demultiplexers
CBDB_BlobDictionary< Key >Templatized candidate for dictionaries This template defines the basic interface that must be supported by all dictionaries
CBDB_BlobDictionary< Int4 >
CBDB_BlobDictionary< Uint4 >Pass-through for Uint4 key types
CBDB_BlobDictStore< Key, Dictionary, Store >
CBDB_BLobFileBerkeley DB BLOB File class
CBDB_BlobMetaContainerContainer of BLOB attributes Encapsulates: BLOB maps of several BLOBs (offsets there point in super BLOB) Super BLOB location table (offsets and sizes in external file)
CBDB_BlobReaderWriterStream style BDB BLOB reader
CBDB_BlobSplitStore< TBV, TObjDeMux, TL >BLOB storage based on single unsigned integer key Supports BLOB volumes and different base page size files in the volume to guarantee the best fit
CBDB_BlobStoreDict< TBV >Persistent storage for demux information
CBDB_BLobStreamBerkeley DB BLOB File stream
CBDB_BufferManagerBDB Data Field Buffer manager class
CBDB_BvPropertyStore< PropKey, PropValue, Dictionary, BvStore, BV >
CBDB_BvSplitDictStore< Key, Dictionary, BvStore, BV >
CBDB_BvStore< TBV >Basic template class for bitvector storage
CBDB_CacheBDB cache implementation
CBDB_CacheHolderClass container for BDB cache objects
CBDB_CacheIReader
CBDB_CacheIWriter
CBDB_CacheReaderCFClass factory for BDB implementation of ICache
CBDB_CacheVerifyAppBDB cache verify application
CBDB_CheckPointThreadTransaction checkpoint / memptrickle thread
CBDB_ConditionHandleFile cursor condition handle
CBDB_ConfigStructureParser
CBDB_CursorGuardBDB Cursor guard
CBDB_DumpScannerQuery scanner
CBDB_EnvBDB environment object a collection including support for some or all of caching, locking, logging and transaction subsystems
CBDB_ErrnoExceptionBDB errno exception class
CBDB_ExceptionBase BDB exception class
CBDB_ExtBlobMapBLOB map, encapsulates collection of BLOB ids and BLOB locations
CBDB_ExtBlobStore< TBV >External BLOB store
CBDB_FC_ConditionInternal class used by CBDB_FileCursor to represent search condition criteries
CBDB_FieldBase class for constructing BDB fields
CBDB_FieldChar
CBDB_FieldDoubleDouble precision floating point field type
CBDB_FieldFactoryClass factory for BDB field types
CBDB_FieldFixedByteStringFixed length bytestring
CBDB_FieldFloatFloat field type
CBDB_FieldInt1Int1 field type
CBDB_FieldInt2Int2 field type
CBDB_FieldInt4Int4 field type
CBDB_FieldInt8Int8 field type
CBDB_FieldInterfacesInterface definition class for field construction
CBDB_FieldLStringLength prefised string field type
CBDB_FieldSimple< T >Template class for building simple scalar data fields
CBDB_FieldSimpleFloat< T >Template class for building simple scalar floating point compatible fields
CBDB_FieldSimpleInt< T >Template class for building simple scalar integer compatible data fields
CBDB_FieldStringString field type designed to work with C-strings (ASCIIZ)
CBDB_FieldStringBaseString field type
CBDB_FieldStringCaseCase-insensitive (but case preserving) string field type
CBDB_FieldUCharChar field type
CBDB_FieldUint1Uint1 field type
CBDB_FieldUint2Uint2 field type
CBDB_FieldUint4Uint4 field type
CBDB_FieldUint8Uint8 field type
CBDB_FileBerkeley DB file class
CBDB_FileCursorBerkeley DB file cursor class
CBDB_FileDumperUtility class to convert DBD files into text files
CBDB_FileDumperAppBDB file dumper application
CBDB_FileScannerScans the BDB file, searches the matching records
CBDB_IdBlobFileVariant of BLOB storage for integer key database
CBDB_IdFileBerkeley DB file class optimized to work with tables having int as the primary key
CBDB_LibExceptionBDB library exception
CBDB_LobFileBerkeley DB Large Object File class
CBDB_MatrixBvStore< TBV, TM >Matrix BV store
CBDB_MergeBlobWalker< BF >Generic iterator to traverse any CBDB_BLobFile for volume merge BF - any CBDB_BLobFile derived class
CBDB_MergeBlobWalkerAsync< BF >Generic iterator to traverse any CBDB_BLobFile for volume merge BF - any CBDB_BLobFile derived class This implementation supports asyncronous processing
CBDB_MergeStore< BStore >Merge store saves result to BLOB store
CBDB_MergeStoreAsync< BStore >Merge store saves result to BLOB store
CBDB_MergeTest
CBDB_MultiRowBufferMultirow buffer for reading many rows in one call
CBDB_PersistentSplitStore< BV, TL >
CBDB_PhoneBookDemo1
CBDB_PhoneBookDemo2
CBDB_PhoneBookDemo3
CBDB_PropertyDictionary< PropKey, PropValue >
CBDB_QueryQuery class incapsulates query tree (query clause) and implements set of utility methods to construct query trees
CBDB_QueryNodeQuery node class
CBDB_QueryParserEnvironmentClass passed to Lex/Bison (yylex/yyparse) functions
CBDB_RangeMap< TBV >Range map class, stores unsigned integer range mappings like 10 to 15 maps into 100 to 115
CBDB_RawFileRaw file class wraps up basic Berkeley DB operations
CBDB_SplitCursor< BDB_SplitStore, BDB_Vol >
CBDB_SplitTest
CBDB_StrErrAdaptAuxiliary exception class to wrap up Berkeley DB strerror function
CBDB_TransactionBDB transaction object
CBDB_TypeMapper< T >Internal template used for compiler based type mapping (C++ templates specialization emplyed here)
CBDB_TypeMapper< int >
CBDB_TypeMapper< string >
CBDB_VolumesVolumes management
CBDB_VolumesExceptionExceptions specific to volumes management
CBDB_VolumesTransactionTransaction class for volumes management
CBDBEnvKeeperApp
CBDBEnvKeeperConnectionFactory
CBDBEnvKeeperConnectionHandlerActual event (command) responder (session state machine)
CBDBEnvKeeperServerMain server class
CBedFeatureRecordEncapsulation of the BED feature record
CBedLoadManagerCBedLoadManager
CBedLoadParams
CBedObjectLoaderCBedObjectLoader
CBedParamsPanel
CBedReaderCReaderBase implementation that reads BED data files, either a single object or all objects found
CBedTrackRecordEncapsulation of a track line in the BED file format
CBedWriterCWriterBase implementation that will render given Genbank objects in the BED file format (http://http://genome.ucsc.edu/FAQ/FAQformat#format1)
CBeginDragOutsideEvent
CBeginInfoClass holding information about root of non-modifiable object hierarchy Do not use it directly
CBestChoiceTracker< T, F >Tracks the best score (lowest value)
CBestFeatFinder
CBestI
CBestIntron
xml::impl::cbfo_node_compare
CBigIntDataType
CBigIntEnumDataType
python::CBinary
CBinaryKmerCountsK-mer counts implemented as bit vectors
CBinaryListBuilderBinary GI or TI List Builder
CBinomialOrgNameCBinomialOrgName --
CBinomialOrgName_BaseCBinomialOrgName_Base --
CBinsDS
CBinsDSType
CBinsGlyph
CBinsJobCBinsJob
CBinsTrack
CBinsTrackFactory
CBiomol_descrCBiomol_descr --
CBiomol_descr_BaseA biomolecule description refers to the chemical structure of a molecule or component substructures
CBioTree< TBioNode >::CBioNode
CPhyTreeFormatter::CBioNodeFinderTree visitor, finds BioTreeDynamic node by id
CBioObjectId
CBiosampleChkApp
CBiosampleFieldDiff
CBioseq
CBioseq_ADJACENT_PSEUDOGENES
CBioseq_BAD_LOCUS_TAG_FORMAT
CBioseq_BaseSequence ********************************
CBioseq_Base_Info
CBioseq_CDS_TRNA_OVERLAP
CBioseq_CICBioseq_CI --
CBioseq_CONTAINED_CDS
CBioseq_COUNT_PROTEINS
CBioseq_COUNT_RRNAS
CBioseq_COUNT_TRNAS
CBioseq_DISC_10_PERCENTN
CBioseq_DISC_BACTERIA_SHOULD_NOT_HAVE_MRNA
CBioseq_DISC_BACTERIAL_PARTIAL_NONEXTENDABLE_EXCEPTION
CBioseq_DISC_BACTERIAL_PARTIAL_NONEXTENDABLE_PROBLEMS
CBioseq_DISC_BAD_BACTERIAL_GENE_NAME
CBioseq_DISC_BAD_BGPIPE_QUALS
CBioseq_DISC_BAD_GENE_STRAND
CBioseq_DISC_CDS_HAS_NEW_EXCEPTION
CBioseq_DISC_CDS_PRODUCT_FIND
CBioseq_DISC_CDS_WITHOUT_MRNA
CBioseq_DISC_CHECK_RNA_PRODUCTS_AND_COMMENTS
CBioseq_DISC_COUNT_NUCLEOTIDES
CBioseq_DISC_DUP_DEFLINE
CBioseq_DISC_DUP_GENPRODSET_TRANSCRIPT_ID
CBioseq_DISC_EXON_INTRON_CONFLICT
CBioseq_DISC_FEAT_OVERLAP_SRCFEAT
CBioseq_DISC_FEATURE_COUNT
CBioseq_DISC_FEATURE_COUNT_oncaller
CBioseq_DISC_FEATURE_LIST
CBioseq_DISC_FEATURE_MOLTYPE_MISMATCH
CBioseq_DISC_GAPS
CBioseq_DISC_GENE_PARTIAL_CONFLICT
CBioseq_DISC_INCONSISTENT_MOLINFO_TECH
CBioseq_DISC_INTERNAL_TRANSCRIBED_SPACER_RRNA
CBioseq_DISC_LONG_NO_ANNOTATION
CBioseq_DISC_MICROSATELLITE_REPEAT_TYPE
CBioseq_DISC_MISSING_DEFLINES
CBioseq_DISC_MITOCHONDRION_REQUIRED
CBioseq_DISC_mRNA_ON_WRONG_SEQUENCE_TYPE
CBioseq_DISC_PARTIAL_PROBLEMS
CBioseq_DISC_PERCENT_N
CBioseq_DISC_POSSIBLE_LINKER
CBioseq_DISC_PROTEIN_NAMES
CBioseq_DISC_PROTEIN_NAMES_global
CBioseq_DISC_QUALITY_SCORES
CBioseq_DISC_RBS_WITHOUT_GENE
CBioseq_DISC_RETROVIRIDAE_DNA
CBioseq_DISC_SHORT_INTRON
CBioseq_DISC_SHORT_RRNA
CBioseq_DISC_SUSPECT_MISC_FEATURES
CBioseq_DISC_SUSPECT_RRNA_PRODUCTS
CBioseq_DISC_SUSPICIOUS_NOTE_TEXT
CBioseq_DUP_GENPRODSET_PROTEIN
CBioseq_DUPLICATE_GENE_LOCUS
CBioseq_DUPLICATE_LOCUS_TAGS
CBioseq_DUPLICATE_LOCUS_TAGS_global
CBioseq_EC_NUMBER_NOTE
CBioseq_EC_NUMBER_ON_UNKNOWN_PROTEIN
CBioseq_EditHandleCBioseq_EditHandle --
CBioseq_EUKARYOTE_SHOULD_HAVE_MRNA
CBioseq_EXTRA_GENES
CBioseq_FEATURE_LOCATION_CONFLICT
CBioseq_FIND_BADLEN_TRNAS
CBioseq_FIND_DUP_RRNAS
CBioseq_FIND_DUP_TRNAS
CBioseq_FIND_OVERLAPPED_GENES
CBioseq_FIND_STRAND_TRNAS
CBioseq_GENE_PRODUCT_CONFLICT
CBioseq_HandleCBioseq_Handle --
CBioseq_INCONSISTENT_LOCUS_TAG_PREFIX
CBioseq_INCONSISTENT_PROTEIN_ID
CBioseq_INCONSISTENT_SOURCE_DEFLINE
CBioseq_Info
CBioseq_JOINED_FEATURES
CBioseq_MISSING_GENES
CBioseq_missing_genes_oncaller
CBioseq_missing_genes_regular
CBioseq_MISSING_GENPRODSET_PROTEIN
CBioseq_MISSING_GENPRODSET_TRANSCRIPT_ID
CBioseq_MISSING_LOCUS_TAGS
CBioseq_MISSING_PROTEIN_ID
CBioseq_MOLTYPE_NOT_MRNA
CBioseq_MRNA_SHOULD_HAVE_PROTEIN_TRANSCRIPT_IDS
CBioseq_MULTIPLE_CDS_ON_MRNA
CBioseq_N_RUNS
CBioseq_N_RUNS_14
CBioseq_NO_ANNOTATION
CBioseq_NO_PRODUCT_STRING
CBioseq_NON_GENE_LOCUS_TAG
CBioseq_NON_RETROVIRIDAE_PROVIRAL
CBioseq_NOTE_NO_TRANSL
CBioseq_on_Aa
CBioseq_on_bad_gene_name
CBioseq_on_base
CBioseq_on_cd_feat
CBioseq_on_feat_cnt
CBioseq_on_locus_tags
CBioseq_on_mRNA
CBioseq_on_mrna
CBioseq_on_SUSPECT_RULE
CBioseq_on_tax_def
CBioseq_ONCALLER_GENE_MISSING
CBioseq_ONCALLER_HAS_STANDARD_NAME
CBioseq_ONCALLER_HIV_RNA_INCONSISTENT
CBioseq_ONCALLER_ORDERED_LOCATION
CBioseq_ONCALLER_SUPERFLUOUS_GENE
CBioseq_OVERLAPPING_CDS
CBioseq_OVERLAPPING_GENES
CBioseq_PARTIAL_CDS_COMPLETE_SEQUENCE
CBioseq_PSEUDO_MISMATCH
CBioseq_RNA_CDS_OVERLAP
CBioseq_RNA_NO_PRODUCT
CBioseq_RNA_PROVIRAL
CBioseq_RRNA_NAME_CONFLICTS
CBioseq_ScopeInfo
CBioseq_SEQ_ID_PHRASES
CBioseq_set
CBioseq_set_BaseSequence Collections ********************************
CBioseq_set_EditHandleCBioseq_set_EditHandle --
CBioseq_set_HandleCBioseq_set_Handle --
CBioseq_set_Info
CBioseq_set_ScopeInfo
CBioseq_setHandler
CBioseq_SHORT_CONTIG
CBioseq_SHORT_PROT_SEQUENCES
CBioseq_SHORT_SEQUENCES
CBioseq_SHORT_SEQUENCES_200
CBioseq_SHOW_HYPOTHETICAL_CDS_HAVING_GENE_NAME
CBioseq_SHOW_TRANSL_EXCEPT
CBioseq_SplitInfo
CBioseq_SUSPECT_PHRASES
CBioseq_TECHNIQUE_NOT_TSA
CBioseq_TEST_BAD_GENE_NAME
CBioseq_TEST_BAD_MRNA_QUAL
CBioseq_TEST_CDS_HAS_CDD_XREF
CBioseq_TEST_COUNT_UNVERIFIED
CBioseq_TEST_DUP_GENES_OPPOSITE_STRANDS
CBioseq_TEST_EXON_ON_MRNA
CBioseq_TEST_LOW_QUALITY_REGION
CBioseq_TEST_MRNA_OVERLAPPING_PSEUDO_GENE
CBioseq_TEST_MRNA_SEQUENCE_MINUS_STRAND_FEATURES
CBioseq_test_on_all_annot
CBioseq_test_on_bac_partial
CBioseq_test_on_cd_4_transl
CBioseq_test_on_genprod_set
CBioseq_test_on_missing_genes
CBioseq_test_on_molinfo
CBioseq_test_on_prot
CBioseq_test_on_protfeat
CBioseq_test_on_rna
CBioseq_test_on_rrna
CBioseq_test_on_suspect_phrase
CBioseq_TEST_ORGANELLE_NOT_GENOMIC
CBioseq_TEST_ORGANELLE_PRODUCTS
CBioseq_TEST_OVERLAPPING_RRNAS
CBioseq_TEST_SHORT_LNCRNA
CBioseq_TEST_TAXNAME_NOT_IN_DEFLINE
CBioseq_TEST_TERMINAL_NS
CBioseq_TEST_UNNECESSARY_VIRUS_GENE
CBioseq_TEST_UNUSUAL_MISC_RNA
CBioseq_TEST_UNUSUAL_NT
CBioseq_TEST_UNWANTED_SPACER
CBioseq_TRANSL_NO_NOTE
CBioseq_TRANSL_TOO_LONG
CBioseq_ZERO_BASECOUNT
CBioseqContext
CBioseqEditor
CBioseqEditorFactory
CBioseqGaps_CIThis iterates over the runs of Ns of each sequence
CBioseqHandler
CBioseqSeqInfoSrcImplementation of the IBlastSeqInfoSrc interface to encapsulate retrieval of sequence identifiers and lengths from a CBioseq/CBioseq_set object
CBioseqSet_DISC_NONWGS_SETS_PRESENT
CBioseqSet_DISC_SEGSETS_PRESENT
CBioseqSet_on_class
CBioseqSet_TEST_SMALL_GENOME_SET_PROBLEM
CBioseqSet_TEST_UNWANTED_SET_WRAPPER
CBioseqSetTestAndRepData
CBioseqTestAndRepData
CBioseqUpdater
CBioSource
CBioSource_BaseBioSource gives the source of the biological material for sequences
CBioSourceAutoComplete
CBioSourceKind
CBioSourcePanel
CBiostruc
CBiostruc_alignCBiostruc_align --
CBiostruc_align_BaseCBiostruc_align_Base --
CBiostruc_align_seqCBiostruc_align_seq --
CBiostruc_align_seq_BaseDisplay seq structure align only
CBiostruc_annot_setCBiostruc_annot_set --
CBiostruc_annot_set_BaseA biostruc annotation set is a means to collect ASN.1 data for biostruc features into one file
CBiostruc_BaseA structure report or "biostruc" describes the components of a biomolecular assembly in terms of their names and descriptions, and a chemical graph giving atomic formula, connectivity and chirality
CBiostruc_descrCBiostruc_descr --
CBiostruc_descr_BaseThe description of a biostruc refers to both the reported chemical and spatial structure of a biomolecular assembly
CBiostruc_featureCBiostruc_feature --
CBiostruc_feature_BaseAn explicitly specified type in Biostruc-feature allows for efficient extraction and indexing of feature sets of a specific type
CBiostruc_feature_idCBiostruc_feature_id --
CBiostruc_feature_id_BaseCBiostruc_feature_id_Base --
CBiostruc_feature_setCBiostruc_feature_set --
CBiostruc_feature_set_BaseNamed model features refer to sets of residues or atoms, or a region in the model space
CBiostruc_feature_set_descrCBiostruc_feature_set_descr --
CBiostruc_feature_set_descr_BaseCBiostruc_feature_set_descr_Base --
CBiostruc_feature_set_idCBiostruc_feature_set_id --
CBiostruc_feature_set_id_BaseCBiostruc_feature_set_id_Base --
CBiostruc_graphCBiostruc_graph --
CBiostruc_graph_BaseA biostruc graph contains the complete chemical graph of the biomolecular assembly
CBiostruc_graph_pntrCBiostruc_graph_pntr --
CBiostruc_graph_pntr_BaseCBiostruc_graph_pntr_Base --
CBiostruc_historyCBiostruc_history --
CBiostruc_history_BaseThe history of a biostruc indicates it's origin and it's update history within MMDB, the NCBI-maintained molecular structure database
CBiostruc_idCBiostruc_id --
CBiostruc_id_BaseA Biostruc-id is a collection identifiers for the molecular assembly
CBiostruc_modelCBiostruc_model --
CBiostruc_model_BaseA structural model maps chemical components into a measured three- dimensional space
CBiostruc_molecule_pntrCBiostruc_molecule_pntr --
CBiostruc_molecule_pntr_BaseAtom, residue or molecule motifs describe a substructure defined by a set of nodes from the chemical graph
CBiostruc_replaceCBiostruc_replace --
CBiostruc_replace_BaseCBiostruc_replace_Base --
CBiostruc_residue_graph_setCBiostruc_residue_graph_set --
CBiostruc_residue_graph_set_BaseA biostruc residue graph set is a collection of residue graphs
CBiostruc_residue_graph_set_pntrCBiostruc_residue_graph_set_pntr --
CBiostruc_residue_graph_set_pntr_BaseCBiostruc_residue_graph_set_pntr_Base --
CBiostruc_scriptCBiostruc_script --
CBiostruc_script_BaseWhen a Biostruc-Feature with a Biostruc-script is initiated, it should play the specified steps one at a time, setting the feature-do list as the active display
CBiostruc_script_stepCBiostruc_script_step --
CBiostruc_script_step_BaseCBiostruc_script_step_Base --
CBiostruc_seqCBiostruc_seq --
CBiostruc_seq_BaseDisplay structure seq added by yanli
CBiostruc_seqsCBiostruc_seqs --
CBiostruc_seqs_aligns_cddCBiostruc_seqs_aligns_cdd --
CBiostruc_seqs_aligns_cdd_BaseCBiostruc_seqs_aligns_cdd_Base --
CBiostruc_seqs_BaseDisplay blast alignment along with neighbor's structure added by yanli
CBiostruc_setCBiostruc_set --
CBiostruc_set_BaseA biostruc set is a means to collect ASN.1 data for many biostrucs in one file, as convenient for application programs
CBiostruc_sourceCBiostruc_source --
CBiostruc_source_BaseThe origin of a biostruc is a reference to another database
CBioTree< TBioNode >Basic tree structure for biological applications
CBioTreeAttrReaderParser-reader for BKBTA - biotree attributes format
CBioTreeContainer
CBioTreeContainer_BaseCBioTreeContainer_Base --
CBioTreeContainerHandler******************************************************************* Moved from plugins/algo/init
CBioTreeConvert2ContainerFunc< TBioTreeContainer, TDynamicTree >Visitor functor to convert dynamic tree nodes to ASN.1 BioTree container
CBioTreeEmptyNodeDataBasic node data structure used by BioTreeBaseNode
CBioTreeFeatureDictionaryFeature dictionary
CBioTreeFeatureListFeatures storage for the bio tree node
CBioTreeFeaturePairTree node feature pair (id to string)
CBioTreeForest< BioTree >Set of BioTree objects managed as a single forest
CBitHacks
CBitmaskAccess
CBitmaskBase
CBitmaskBuilder
CBitStringDataType
CBitStringDataValue
CBitStringFunctions
CBitStringTypeStrings
CBl2SeqRuns the BLAST algorithm between 2 sequences
CBlast4_alignments_for_queryCBlast4_alignments_for_query --
CBlast4_alignments_for_query_BaseAlignments for one query, compiled from the raw SeqAlign results
CBlast4_archiveCBlast4_archive --
CBlast4_archive_BaseAn archive format for results
CBlast4_common_optionsCBlast4_common_options --
CBlast4_common_options_BaseCBlast4_common_options_Base --
CBlast4_common_options_db_restrictionCBlast4_common_options_db_restriction --
CBlast4_common_options_db_restriction_BaseCBlast4_common_options_db_restriction_Base --
CBlast4_common_options_db_restriction_by_organismCBlast4_common_options_db_restriction_by_organism --
CBlast4_common_options_db_restriction_by_organism_BaseData types to be used in BLAST4 "Lite"
CBlast4_common_options_discontiguous_megablastCBlast4_common_options_discontiguous_megablast --
CBlast4_common_options_discontiguous_megablast_BaseCBlast4_common_options_discontiguous_megablast_Base --
CBlast4_common_options_nucleotide_queryCBlast4_common_options_nucleotide_query --
CBlast4_common_options_nucleotide_query_BaseCBlast4_common_options_nucleotide_query_Base --
CBlast4_common_options_query_filteringCBlast4_common_options_query_filtering --
CBlast4_common_options_query_filtering_BaseCBlast4_common_options_query_filtering_Base --
CBlast4_common_options_repeats_filteringCBlast4_common_options_repeats_filtering --
CBlast4_common_options_repeats_filtering_BaseCBlast4_common_options_repeats_filtering_Base --
CBlast4_common_options_scoringCBlast4_common_options_scoring --
CBlast4_common_options_scoring_BaseCBlast4_common_options_scoring_Base --
CBlast4_cutoffCBlast4_cutoff --
CBlast4_cutoff_BaseOther types in alphabetical order
CBlast4_database
CBlast4_database_BaseCBlast4_database_Base --
CBlast4_database_infoCBlast4_database_info --
CBlast4_database_info_BaseCBlast4_database_info_Base --
CBlast4_errorCBlast4_error --
CBlast4_error_BaseErrors
CBlast4_finish_params_replyCBlast4_finish_params_reply --
CBlast4_finish_params_reply_BaseCBlast4_finish_params_reply_Base --
CBlast4_finish_params_requestCBlast4_finish_params_request --
CBlast4_finish_params_request_BaseEND ADD EXT INFO
CBlast4_get_databases_ex_replyCBlast4_get_databases_ex_reply --
CBlast4_get_databases_ex_reply_BaseCBlast4_get_databases_ex_reply_Base --
CBlast4_get_databases_ex_requestCBlast4_get_databases_ex_request --
CBlast4_get_databases_ex_request_BaseCBlast4_get_databases_ex_request_Base --
CBlast4_get_databases_replyCBlast4_get_databases_reply --
CBlast4_get_databases_reply_BaseCBlast4_get_databases_reply_Base --
CBlast4_get_matrices_replyCBlast4_get_matrices_reply --
CBlast4_get_matrices_reply_BaseCBlast4_get_matrices_reply_Base --
CBlast4_get_parameters_replyCBlast4_get_parameters_reply --
CBlast4_get_parameters_reply_BaseCBlast4_get_parameters_reply_Base --
CBlast4_get_paramsets_replyCBlast4_get_paramsets_reply --
CBlast4_get_paramsets_reply_BaseNote: Paramsets and tasks represent the same concept: a human readable description that represents a set of parameters with specific values to accomplish a given task
CBlast4_get_programs_replyCBlast4_get_programs_reply --
CBlast4_get_programs_reply_BaseCBlast4_get_programs_reply_Base --
CBlast4_get_protocol_info_replyCBlast4_get_protocol_info_reply --
CBlast4_get_protocol_info_reply_BaseCBlast4_get_protocol_info_reply_Base --
CBlast4_get_protocol_info_requestCBlast4_get_protocol_info_request --
CBlast4_get_protocol_info_request_BaseSupport for version and checking availability of methods
CBlast4_get_queries_replyCBlast4_get_queries_reply --
CBlast4_get_queries_reply_BaseCBlast4_get_queries_reply_Base --
CBlast4_get_request_info_replyCBlast4_get_request_info_reply --
CBlast4_get_request_info_reply_BaseCBlast4_get_request_info_reply_Base --
CBlast4_get_request_info_requestCBlast4_get_request_info_request --
CBlast4_get_request_info_request_BaseFetch information about the search request
CBlast4_get_search_info_replyCBlast4_get_search_info_reply --
CBlast4_get_search_info_reply_BaseCBlast4_get_search_info_reply_Base --
CBlast4_get_search_info_requestCBlast4_get_search_info_request --
CBlast4_get_search_info_request_BaseVariose search information
CBlast4_get_search_results_replyCBlast4_get_search_results_reply --
CBlast4_get_search_results_reply_BaseCBlast4_get_search_results_reply_Base --
CBlast4_get_search_results_requestCBlast4_get_search_results_request --
CBlast4_get_search_results_request_BaseCBlast4_get_search_results_request_Base --
CBlast4_get_search_status_replyCBlast4_get_search_status_reply --
CBlast4_get_search_status_reply_BaseReply to retrieve the status of a given search
CBlast4_get_search_status_requestCBlast4_get_search_status_request --
CBlast4_get_search_status_request_BaseRequest to retrieve the status of a given search
CBlast4_get_search_strategy_replyCBlast4_get_search_strategy_reply --
CBlast4_get_search_strategy_reply_BaseReturn the search strategy (i.e
CBlast4_get_search_strategy_requestCBlast4_get_search_strategy_request --
CBlast4_get_search_strategy_request_BaseFetch the search strategy (i.e
CBlast4_get_seq_parts_replyCBlast4_get_seq_parts_reply --
CBlast4_get_seq_parts_reply_BaseCBlast4_get_seq_parts_reply_Base --
CBlast4_get_seq_parts_requestCBlast4_get_seq_parts_request --
CBlast4_get_seq_parts_request_BaseFetch parts of sequences from a BLAST database
CBlast4_get_sequences_replyCBlast4_get_sequences_reply --
CBlast4_get_sequences_reply_BaseCBlast4_get_sequences_reply_Base --
CBlast4_get_sequences_requestCBlast4_get_sequences_request --
CBlast4_get_sequences_request_BaseFetch sequence data from a BLAST database
CBlast4_get_windowmasked_taxids_replyCBlast4_get_windowmasked_taxids_reply --
CBlast4_get_windowmasked_taxids_reply_BaseCBlast4_get_windowmasked_taxids_reply_Base --
CBlast4_ka_blockCBlast4_ka_block --
CBlast4_ka_block_BaseCBlast4_ka_block_Base --
CBlast4_maskCBlast4_mask --
CBlast4_mask_BaseMasking locations for a query's frame
CBlast4_matrix_idCBlast4_matrix_id --
CBlast4_matrix_id_BaseCBlast4_matrix_id_Base --
CBlast4_options_liteCBlast4_options_lite --
CBlast4_options_lite_BaseCBlast4_options_lite_Base --
CBlast4_parameterCBlast4_parameter --
CBlast4_parameter_BaseCBlast4_parameter_Base --
CBlast4_parameter_infoCBlast4_parameter_info --
CBlast4_parameter_info_BaseCBlast4_parameter_info_Base --
CBlast4_parameters
CBlast4_parameters_BaseCBlast4_parameters_Base --
CBlast4_phi_alignmentsCBlast4_phi_alignments --
CBlast4_phi_alignments_BaseCBlast4_phi_alignments_Base --
CBlast4_program_infoCBlast4_program_info --
CBlast4_program_info_BaseCBlast4_program_info_Base --
CBlast4_queries
CBlast4_queries_BaseIf a PSSM is used (ie
CBlast4_queue_search_replyCBlast4_queue_search_reply --
CBlast4_queue_search_reply_BaseCBlast4_queue_search_reply_Base --
CBlast4_queue_search_requestCBlast4_queue_search_request --
CBlast4_queue_search_request_BaseOptions have been broken down into three groups as part of the BLAST API work
CBlast4_queue_search_request_liteCBlast4_queue_search_request_lite --
CBlast4_queue_search_request_lite_BaseSimplified search submission structure
CBlast4_range
CBlast4_range_BaseRange on a sequence - zero offset
CBlast4_replyCBlast4_reply --
CBlast4_reply_BaseReplies
CBlast4_reply_bodyCBlast4_reply_body --
CBlast4_reply_body_BaseCBlast4_reply_body_Base --
CBlast4_requestCBlast4_request --
CBlast4_request_BaseRequests
CBlast4_request_bodyCBlast4_request_body --
CBlast4_request_body_BaseCBlast4_request_body_Base --
CBlast4_seq_part_dataCBlast4_seq_part_data --
CBlast4_seq_part_data_BaseBundles Seq-ids and sequence data to fulfill requests of type Blast4-get-seq-parts-request
CBlast4_simple_alignmentCBlast4_simple_alignment --
CBlast4_simple_alignment_BaseA single alignment
CBlast4_simple_resultsCBlast4_simple_results --
CBlast4_simple_results_BaseComplete set of simple Blast results
CBlast4_subjectCBlast4_subject --
CBlast4_subject_BaseCBlast4_subject_Base --
CBlast4_task_infoCBlast4_task_info --
CBlast4_task_info_BaseSelf documenting task structure
CBlast4_valueCBlast4_value --
CBlast4_value_BaseCBlast4_value_Base --
CBlast4ClientCBlast4Client --
CBlast4Client_BaseCBlast4Client_Base --
CBlast4FieldField properties for options in a Blast4 parameter list
CBLAST_DB_DialogCBLAST_DB_Dialog
CBlast_db_mask_infoCBlast_db_mask_info --
CBlast_db_mask_info_BaseDefines the masking information for a set of sequences
CBlast_def_line
CBlast_def_line_BaseCBlast_def_line_Base --
CBlast_def_line_set
CBlast_def_line_set_BaseAll deflines for an entry
CBLAST_Dlg_Item
CBlast_ExtendWordWrapper class for Blast_ExtendWord
CBlast_mask_listCBlast_mask_list --
CBlast_mask_list_BaseCBlast_mask_list_Base --
CBlast_MessageWrapper class for Blast_Message
CBLAST_SequenceBlkWrapper class for BLAST_SequenceBlk
CBlastAdvancedProteinOptionsHandleHandle to the Advanced BLASTP options
CBlastAligner
CBlastAncillaryDataClass used to return ancillary data from a blast search, i.e
CBlastAppArgsBase command line argument class for a generic BLAST command line binary
CBlastArgs
CBlastBioseqMakerAuxiliary class for creating Bioseqs given SeqIds
CBlastDatabaseArgsArgument class to collect database/subject arguments
CBlastDatabaseOptionsWrapper class for BlastDatabaseOptions
CBlastDb_DataLoaderCFData Loader Factory for BlastDbDataLoader
CBlastDBAliasAppThe main application class
CBlastDbBioseqSource
CBlastDbBlob`Blob' Class for SeqDB (and WriteDB)
CBlastDbCheckApplicationCBlastDbCheckApplication: the main application class
CBlastDbCheckLog
CBlastDBCmdAppThe application class
CBlastDbDataLoader
CBlastDBExtractorClass to extract data from a BLAST database given an identifier
CBlastDbFinderFunctor class for FindFilesInDir
CBlastDbFormatterCustomizable BLAST DB information formatter interface
CBlastDbMetadataProxy class for retrieving meta data from a BLAST DB
CBlastDBSeqIdEncapsulates identifier to retrieve data from a BLAST database
CBlastDbSet
CBlastDemoApplication
CBLASTDlgItemDataCExplorerItemData - tree item attachment pointing back to CExplorerItem
CBlastEffectiveLengthsOptionsWrapper class for BlastEffectiveLengthsOptions
CBlastEffectiveLengthsParametersWrapper class for BlastEffectiveLengthsParameters
CBlastExceptionDefines BLAST error codes (user errors included)
CBlastExtendTestFixture
CBlastExtensionOptionsWrapper class for BlastExtensionOptions
CBlastExtensionParametersWrapper class for BlastExtensionParameters
CBlastFastaInputSourceClass representing a text file containing sequences in fasta format
CBlastFilterTest
CBlastFormatThis class formats the BLAST results for command line applications
CBlastFormatterAppThe application class
CBlastFormattingMatrix256x256 matrix used for calculating positives etc
CBlastFormatUtilSetting up scope
CBlastGapAlignStructWrapper class for BlastGapAlignStruct
CBlastHitMatrixThis class displays the image of the hitmatrix view for blast 2 seq results
CBlastHitMatrixCGIApplicationCBlastHitMatrixCGIApplication This CGI loads an accession from GenBank, extract a Seq-annot from the sequence and renders a pairwise alignment between the first two Seq-id in the alignment
CBlastHitMatrixCGIException
CBlastHitSavingOptionsWrapper class for BlastHitSavingOptions
CBlastHitSavingParametersWrapper class for BlastHitSavingParameters
CBlastHSPListQueueDataData structure for the queue implementation of BlastHSPStream
CBlastHSPResultsWrapper class for BlastHSPResults
CBlastInitialWordOptionsWrapper class for BlastInitialWordOptions
CBlastInitialWordParametersWrapper class for BlastInitialWordParameters
CBlastInputGeneralized converter from an abstract source of biological sequence data to collections of blast input
CBlastInputDemoApplication
CBlastInputReaderClass to read non-FASTA sequence input to BLAST programs using the various data loaders configured in CBlastScopeSource objects
CBlastInputSourceBase class representing a source of biological sequences
CBlastInputSourceConfigClass that centralizes the configuration data for sequences to be converted
CBlastMaskLocWrapper class for BlastMaskLoc
CBlastnApp
CBlastnAppArgsHandles command line arguments for blastn binary
CBlastNucleotideOptionsHandleHandle to the nucleotide-nucleotide options to the BLAST algorithm
TestUtil::CBlastOMClass which registers the BLAST database and Genbank data loaders as a non-default data loaders with the object manager upon construction
CBlastOptionsEncapsulates ALL the BLAST algorithm's options
CBlastOptionsBuilderClass to build CBlastOptionsHandle from blast4 ASN objects
CBlastOptionsFactoryCreates BlastOptionsHandle objects with default values for the programs/tasks requested
CBlastOptionsHandleHandle to the options to the BLAST algorithm
CBlastOptionsLocalEncapsulates all blast input parameters
CBlastOptionsMementoClass that allows the transfer of data structures from the CBlastOptionsLocal class to either the BLAST preliminary or traceback search classes
CBlastOptionsRemoteEncapsulates all blast input parameters
CBlastOutputCBlastOutput --
CBlastOutput_BaseCBlastOutput_Base --
CBlastpApp
CBlastpAppArgsHandles command line arguments for blastp binary
CBLASTParamsCBLASTParams - save user-specified parameters and preferences
CBlastPrelimSearchSearch class to perform the preliminary stage of the BLAST search
CBlastProteinOptionsHandleHandle to the protein-protein options to the BLAST algorithm
CBlastQueryFilteredFramesCollection of BlastSeqLoc lists for filtering processing
CBlastQueryInfoWrapper class for BlastQueryInfo
CBlastQuerySourceBioseqSetImplements the IBlastQuerySource interface using a CBioseq_set as data source
CBlastQuerySourceOMImplements the object manager dependant version of the IBlastQuerySource
CBlastQueryVectorQuery Vector
CBlastRPSAuxInfoWrapper class to manage the BlastRPSAuxInfo structure, as currently there aren't any allocation or deallocation functions for this structure in the CORE of BLAST
CBlastRPSInfoWrapper class to manage the BlastRPSInfo structure, as currently there aren't any allocation or deallocation functions for this structure in the CORE of BLAST
CBlastRPSOptionsHandleHandle to the rpsblast options to the BLAST algorithm
CBlastSampleApplication
CBlastScopeSourceClass whose purpose is to create CScope objects which have data loaders added with different priorities, so that the BLAST database data loader is used first, then the Genbank data loader
CBlastScopeSourceWrapperRAII class for the CBlastScopeSource
CBlastScoreBlkWrapper class for BlastScoreBlk
CBlastScorer
CBlastScoringOptionsWrapper class for BlastScoringOptions
CBlastScoringParametersWrapper class for BlastScoringParameters
CBLASTSearchOptionsPanel
CBLASTSearchParamsPanel
CBlastSearchQuerySearch Query
CBlastSearchTaskTODO
CBLASTSearchToolManagerCBLASTSearchToolManager
CBlastSeqLocWrapper class for BlastSeqLoc
CBlastSeqLocWrapWrapper for BlastSeqLoc structure
CBlastSeqSrcWrapper class for BlastSeqSrc
CBlastSeqSrcIteratorWrapper class for BlastSeqSrcIterator
CBLASTSeqToolJobCBLASTSeqToolJob
CBLASTSeqToolManagerCBLASTSeqToolManager
CBlastSequenceSource
CBlastSeqVectorFromCSeq_dataImplementation of the IBlastSeqVector interface which obtains data from a CSeq_data object
CBlastSeqVectorOMImplementation of the IBlastSeqVector interface which obtains data from a CSeq_loc and a CScope relying on the CSeqVector class
CBlastServicesAPI for Remote Blast Services
CBlastServicesExceptionRemoteServicesException
CBlastSetupTestFixture
CBlastSystemExceptionDefines system exceptions occurred while running BLAST
CBlastTabular
CBlastTabularInfoClass containing information needed for tabular formatting of BLAST results
CBLASTToolManagerBaseCBLASTToolManagerBase
CBlastTracebackSearch
CBlastVersionKeeps track of the version of the BLAST engine in the NCBI C++ toolkit
CBlastxApp
CBlastxAppArgsHandles command line arguments for blastx binary
CBlastxOptionsHandleHandle to the translated nucleotide-protein options to the BLAST algorithm
CBlob_Annot_Info
CBlob_id
CBlob_Info
CBlobBookmarkObject used to store bookmarks to blobs to be changed later
CBlobBookmarkImpl
CBlobCacher
CBlobId
CBlobIdFor< Value, Converter >
CBlobIdKey
CBlobIStream
CBlobLoader
CBlobMetaDBDictionary file, storing references on external BLOB file (super BLOB structure)
CBlobOStream
CBlobReader
CBlobRetriever
CBlobSplitter
CBlobSplitterImpl
CBlobStateExceptionBlob state exceptions, used by GenBank loader
CBlobStorage_NetCacheCBlobStorage_NetCache -- NetCache-based implementation of IBlobStorage
CBlobStorage_NullAn Empty implementation of Blob Storage Interface
CBlobStorageExceptionBlob Storage Exception
CBlobStorageFactoryBlob Storage Factory interface
CBlobStorageFactory_NullBlob Storage Factory interface
CBlobStorageNetCacheCF
CBlobStoreBase
CBlobStoreDynamic
CBlobStoreStatic
CWriter::CBlobStream
CBlobStreamHelper
CBlobWriter
CBlockDataValue
CBlockedAlignmentEditor
CBV_PoolBlockAlloc< BA, Lock >::CBlockFactory
CBlockingQueue< TRequest >CBlockingQueue<> -- queue of requests, with efficiently blocking Get()
CBlockingQueue_ForServer
CBlockingQueueException
CBlockPropertyCBlockProperty --
CBlockProperty_BaseRudimentary block/core-model, to be used with block-based alignment routines and threading
CBMARefinerBlockEditPhase
CBMARefinerCycle
CBMARefinerEngine
CBMARefinerLOOPhase
CBMARefinerPhase
CBMARefinerTrial
CBMode
CBondList
CBondPanel
CBookChapterPanel
CBookmarkClass CBookmark defines the data stored in an individual sequence-based bookmark
CBookmarkManagerClass CBookmarkManager manages a set of bookmarks, complete with hooks for serialization and efficient retrieval of bookmarks for a given seq-id
CBookmarksHandlerClass CBookmarksHandler represents in GUI a bookmarks on a sequence bar
CBookPanel
pythonpp::CBool
CBoolDataType
CBoolGuard
CElementaryMatching::CBoolVector
CBoundaryParamsIBoundaryParams
CBoundaryParmsCBoundaryParms
CBoundaryPointsCBoundaryPoints --
CBoundaryShapeRectCBoundaryShapeRect --
CBoundaryShapeRectBaseCBoundaryShapeRectBase --
CBoundaryShapeRoundedRectCBoundaryShapeRoundedRect --
CBoundaryShapeTriCBoundaryShapeTri --
CBoyerMooreMatcherThis implemetation uses the Boyer-Moore alg
CBrickCBrick --
CBrick_BaseA brick is defined by the coordinates of eight corners
CBroadcastDialog
CBroadcastVRChangeDialog
CBrowserData
CBrowserUtils
CBssInfoApp
CBucketPool< Value, Lock, RPool >Bucket of resourse pools
pythonpp::CBuffer
CBufferedLineReaderImplementation of ILineReader for IReader
CBufferWriter< TBuffer >
CBufferWriterStream< Buffer >
CBuildAlnVecJobCBuildAlnVecJob
CBuildAlnVecResultCBuildAlnVecResult
CBuildDatabaseBuild BlastDB format databases from various data sources
CBuildOptionsDlgCwxBuildOptionsDlg
CBuildSparseAlnJobCBuildSparseAlnJob
CBuildSparseAlnResultCBuildAlnVecResult
CBuildTypeUtility class for distinguish between static and dll builds
CBulkCDS
CBulkCDSAddPanel
CBulkCmdDlg
CBulkCmdPanel
CBulkEditFeatDlg
CBulkFeatureAddDlg
CBulkGene
CBulkInsertObject used to perform bulk-inserting operations to database
CBulkInsertImpl
CBulkLocationPanel
CBulkMolinfoEditDlg
CBulkOtherAddPanel
CBulkRna
CBulkRNAAddPanel
CBundle_seqs_alignsCBundle_seqs_aligns --
CBundle_seqs_aligns_BaseGeneric bundle of sequence and alignment info
CButtonList
CButtonPanel
CBV_PoolBlockAlloc< BA, Lock >Thread-safe pool block allocator for NCBI bitsets
CBVector_data
CBVector_data_BaseClass for serializing bm::bvector<> see include/util/bitset/bm.h Since bvector<> serialization doesn't keep size we have to add it explicitly
CBvGapFactory< TBV >Bit-vector factory
CBVResourcePool< BV, Lock >Resource pool for bit-vectors Bit-vector creation-destruction can be expensive, use pool to recycle used objects
CByte_graphCByte_graph --
CByte_graph_BaseInteger from 0-255
CByteOrderMarkByte Order Mark helper class to use in serialization
CByteSource
CByteSourceReader
CByteStreamBuf
CByteSwapCByteSwap --
CBZip2CompressionCBZip2Compression --
CBZip2CompressionFileCBZip2CompressionFile class --
CBZip2CompressorCBZip2Compressor -- bzip2 based compressor
CBZip2DecompressorCBZip2Decompressor -- bzip2 based decompressor
CBZip2StreamCompressorCBZip2StreamCompressor -- bzip2 based compression stream processor
CBZip2StreamDecompressorCBZip2StreamDecompressor -- bzip2 based decompression stream processor
CValidator::CCache
CCache< TKey, TValue, THandler, TLock, TSize >Cache template
CCacheBlobStream
CCacheBufferResizeStrategyBuffer resize strategy, to balance memory reallocs and heap consumption
CCacheCleanerThreadThread class, peridically calls ICache::Purge to remove obsolete elements
CCachedDictionaryClass CCachedDictionary provides an internalized mechanism for caching the alternates returned by SuggestAlternates()
CCacheDemoApp
python::CCachedResultSet
impl::CCachedRowInfo
CCachedSeqDataForRemoteThis class defines a "bundle" of elements to cache which are then returned by CRemoteBlastDbAdapter
CCachedSequenceManages a TSE and its subordinate chunks for all implementations of the IBlastDbAdapter interface
CCachedTaxon3
CCachedTaxon3_impl
CCachedTipHandle
CCacheElement_Handler< TKey, TValue >Default (NOP) element handler
CCacheElement_Less< TCacheElementPtr >Compare cache elements by weight/order
CCacheExceptionException thrown by CCache
CCacheHashedContentHashed content cache
CCacheHolder
CValidator::CCacheImplCache various information for one validation run
CCacheReader
CCacheReaderCF
CCacheWriter
CCacheWriterCFClass factory for Cache writer
pythonpp::CCalable
CCalcCaretPosOStream
CCalcCharsOStream
CCalcDataPosOStream
CCalcNBPosOStream
CCalcSizeCache
CCalcSizeOStream
CCalcSizeStream
CCalcTextPosOStream
CCallableStatement
python::CCallableStmtHelper
pythonpp::CCallIterator
CCameraCCamera --
CCamera_BaseThe camera is a position relative to the world coordinates of the structure referred to by a location
CFlatFileGenerator::CCancelableFlatItemOStreamWrapperUse this class to wrap CFlatItemOStream instances so that they check if canceled for every item added
CJobCancelableImpl< T >::CCanceled
CCanceledImpl
CTextRetrieveJob::CCancelException
CCancelGuard
CCancelRequestException
CCapChangePanel
CCapitalizationAbbreviations
CCategoryCCategory --
CCategory_BaseCCategory_Base --
CCategoryConfigData structure holding configuration for a track
CCdCore
CCdd
CCdd_BaseCdd is the basic ASN.1 object storing an annotated and curated set of alignments (formulated as a set of pairwise master-slave alignments)
CCdd_book_refCCdd_book_ref --
CCdd_book_ref_BaseRecord a link to Entrez Books
CCdd_DataLoaderCF
CCdd_descrCCdd_descr --
CCdd_descr_BaseThe description of CDD's refers to the specific set of aligned sequences, the region that is being aligned and the information contained in the alignment
CCdd_descr_setCCdd_descr_set --
CCdd_descr_set_BaseCCdd_descr_set_Base --
CCdd_idCCdd_id --
CCdd_id_BaseCCdd_id_Base --
CCdd_id_setCCdd_id_set --
CCdd_id_set_BaseCCdd_id_set_Base --
CCdd_org_refCCdd_org_ref --
CCdd_org_ref_BaseDealing with lists of preferred tax-nodes
CCdd_org_ref_setCCdd_org_ref_set --
CCdd_org_ref_set_BaseCCdd_org_ref_set_Base --
CCdd_pref_node_descrCCdd_pref_node_descr --
CCdd_pref_node_descr_BaseCCdd_pref_node_descr_Base --
CCdd_pref_node_descr_setCCdd_pref_node_descr_set --
CCdd_pref_node_descr_set_BaseCCdd_pref_node_descr_set_Base --
CCdd_pref_nodesCCdd_pref_nodes --
CCdd_pref_nodes_BaseCCdd_pref_nodes_Base --
CCdd_ProjectCCdd_Project --
CCdd_Project_BaseCd colors are as: 0000FF for red, 00FF00 for green, FF0000 for blue
CCdd_repeatCCdd_repeat --
CCdd_repeat_BaseRecord whether the CD contains repeated sequence/structure motifs
CCdd_ScriptCCdd_Script --
CCdd_Script_BaseCCdd_Script_Base --
CCdd_setCCdd_set --
CCdd_set_BaseCCdd_set_Base --
CCdd_treeCCdd_tree --
CCdd_tree_BaseCdd-tree stores the hierarchy of CDDs
CCdd_tree_setCCdd_tree_set --
CCdd_tree_set_BaseCCdd_tree_set_Base --
CCdd_ViewerCCdd_Viewer --
CCdd_Viewer_BaseCCdd_Viewer_Base --
CCdd_Viewer_RectCCdd_Viewer_Rect --
CCdd_Viewer_Rect_BaseCdd projects store a set of CDs, typically related to each other relationships would be specified using the ancestors fields in the individual CD objects
CCdDbPriority
CCddDataLoader
CCddDeltaHeadersTest
CCddHeadersTest
CCddInputDataStrategy for pre-processing RPS-BLAST matches for PSSM computation
CCdFromFasta
CCdregionCCdregion --
CCdregion_BaseCdRegion ***********************************************
CCdregion_translatePublic interface for coding region translation function Uses CTrans_table in <objects/seqfeat/Genetic_code_table.hpp> for rapid translation from a given genetic code, allowing all of the iupac nucleotide ambiguity characters
variation::CVariationUtil::CCdregionIndexCache seq-data in the CDS regions and the cds features by location
CCdsConfig
CCDSExceptionPanel
CCdsForMrnaPlugin
CCDSGeneProt_constraint_fieldCCDSGeneProt_constraint_field --
CCDSGeneProt_constraint_field_BaseCCDSGeneProt_constraint_field_Base --
CCDSGeneProt_field_pairCCDSGeneProt_field_pair --
CCDSGeneProt_field_pair_BaseCCDSGeneProt_field_pair_Base --
CCDSGeneProt_pseudo_constraintCCDSGeneProt_pseudo_constraint --
CCDSGeneProt_pseudo_constraint_BaseCCDSGeneProt_pseudo_constraint_Base --
CCDSGeneProt_qual_constraintCCDSGeneProt_qual_constraint --
CCDSGeneProt_qual_constraint_BaseCCDSGeneProt_qual_constraint_Base --
CCDSGeneProtFieldNamePanel
CCdsGlyph
CCDSInfo
CCDSProductPanel
CCDSProteinPanel
CCDStomRNALinkBuilder
CCDSTranslationPanel
CAligner::CCell
pythonpp::CCell
CCellHyperlinks
CCgi2RCgiApp
CCgiApplication
CCgiApplicationCached
CCgiContext
CCgiCookieCCgiCookie::
CCgiCookieExceptionCCgiCookieException --
CCgiCookiesCCgiCookies::
CCgiEntries_Parser
CCgiEntry
CCgiEntryReader
CCgiEntryReaderContext
CCgiEnvHolder
CCgiErrnoExceptionCCgiErrnoException --
CCgiException
CCgiFontTestApp
CCgiHeadExceptionCCgiHeadException --
CCgiIbuffer
CCgiObuffer
CCgiParseExceptionCCgiParseException --
CCgiRedirectApplicationCCgiRedirectApplication --
CCgiRequestCCgiRequest::
CCgiRequestExceptionCCgiRequestException --
CCgiResponse
CCgiResponseExceptionCCgiResponseException --
CCgiSampleApplication
CCgiServerContext
CCgiSessionCCgiSession --
CCgiSession_NetCache
CCgiSessionExceptionCCgiSessionException --
CCgiSessionParameters
CCgiSessionSampleApplication
CCgiStatistics
CCGIStreamReader
CCgiStreamWrapper
CCgiStreamWrapperWriter
CCGIStreamWriter
CCgiTunnel2Grid
CCgiUserAgentCCgiUserAgent --
CCgiWorkerNodeJob
CCgiWorkerNodeJobFactory
CSuspectRuleCheck::CCGPSetData
CChain
CChainer
CChainerArgUtil
CChainer::CChainerImpl
CChainMembers
CChangeCaseSubpanel
CChangePhyloPropertyCmd
CChangePhyloTreeCommand
CChangeSeqdescTitleCommand
CChangeStructuredCommentKeyword
CChangeUnindexedObjectCommand< T >
pythonpp::CChar
CCharacterSetCCharacterSet --
CCharacterSet_BaseNcbi: removed BootstrapperComponentsLocation ncbi: removed BootstrapperComponentsUrl ncbi: removed BootstrapperEnabled
CCharHistogramCCharHistogram
CCharInSet
CCharPtrFunctions< T >
CChartElem
CCharVectorFunctions< Char >
CCharVectorFunctionsBase
CCharVectorTypeInfo< Char >
CCheckBoxCCheckBox --
CCheckBox_BaseCCheckBox_Base --
CCheckingClass
CCheckMe< TValue >Wrapper around an object of type TValue, that makes it mandatory to check object value somehow after each assignment
CChecksumCChecksum -- Checksum calculator
CChecksumExceptionCChecksumException --
CChecksumStreamWriterCChecksumStreamWriter --
CChem_graph_alignmentCChem_graph_alignment --
CChem_graph_alignment_BaseA biostruc alignment establishes an equivalence of nodes in the chemical graphs of two or more biostrucs
CChem_graph_interactionCChem_graph_interaction --
CChem_graph_interaction_BaseCChem_graph_interaction_Base --
CChem_graph_pntrsCChem_graph_pntrs --
CChem_graph_pntrs_BaseCChem_graph_pntrs_Base --
CChimeraCommentDescriptorTableCommandConverter
CChimeraPanel
CChiral_centerCChiral_center --
CChiral_center_BaseChiral centers are atoms with tetrahedral geometry
CChoiceCChoice --
CChoice_BaseCChoice_Base --
CChoiceDataType
CChoiceItemCChoiceItem --
CChoiceItem_BaseCChoiceItem_Base --
CChoicePointerTypeInfo
CChoicePtrRefTypeStrings
CChoicePtrTypeStrings
CChoiceRefTypeStrings
CChoiceTypeInfo
CChoiceTypeInfoFunctions
CChoiceTypeStrings
CChymoPEMSEnzymes_chymotrypsin_p chymotrypsin without proline rule
CChymotrypsin
CCigar
CCIGAR_FormatterThe base class for alignment formatters which use CIGAR format
CAlignCigarScore::CCigarIterator
CCit_art
CCit_art_BaseCitation Types article in journal or book
CCit_book
CCit_book_BaseBook citation
CCit_gen
CCit_gen_BaseNOT from ANSI, this is a catchall
CCit_jour
CCit_jour_BaseJournal citation
CCit_let
CCit_let_BaseLetter, thesis, or manuscript
CCit_pat
CCit_pat_BasePatent number and date-issue were made optional in 1997 to support patent applications being issued from the USPTO Semantically a Cit-pat must have either a patent number or an application number (or both) to be valid patent citation
CCit_proc
CCit_proc_BaseMeeting proceedings
CCit_sub
CCit_sub_BaseNOTE: this is just to cite a direct data submission, see NCBI-Submit for the form of a sequence submission citation for a direct submission
CCitationColumn
CCitationsPanel
CCitRetractCCitRetract --
CCitRetract_BaseCCitRetract_Base --
CCitSubPanel
CCLCCL --
CCL_BaseNcbi: removed ReadLinesFromFile ncbi: removed RegisterAssembly ncbi: removed RemoveDir ncbi: removed RemoveDuplicates ncbi: removed RequiresFramework35SP1Assembly ncbi: removed ResolveAssemblyReference ncbi: removed ResolveComReference ncbi: removed ResolveKeySource ncbi: removed ResolveManifestFiles ncbi: removed ResolveNativeReference ncbi: removed ResolveNonMSBuildProjectOutput ncbi: removed SGen ncbi: removed SignFile ncbi: removed TlbImp ncbi: removed Touch ncbi: removed UnregisterAssembly ncbi: removed UpdateManifest ncbi: removed Vbc ncbi: removed VCBuild ncbi: removed Warning ncbi: removed WriteCodeFragment ncbi: removed WriteLinesToFile ncbi: removed XslTransformation ncbi: removed CodeAnalysis ==================== NATIVE CL/LINK TASKS ==========================
pythonpp::CExtObject< T >::CClass< N >
pythonpp::CExtModule< T >::CClass< N >
CClassCode
CClassContext
CClassInfoHelper< C >
CClassInfoHelperBase
CClassPrePostReadWrite< Class >
CClassRefTypeStrings
CClassTypeInfo
CClassTypeInfoBase
CClassTypeStrings
CClCompileCClCompile --
CClCompile_BaseNcbi: removed COMFileReference ncbi: removed Xdcmake ncbi: removed Bscmake
CCleanup
CCleanupAlignmentsJobCCleanupAlignmentsJob
CCleanupAlignmentsParamsPanel
CCleanupAlignmentsToolManagerCCleanupAlignmentsToolManager
CCleanupApp
CCleanupChangeAll the changes made during cleanup
CCleanupJobCCleanupJob
CCleanupPanel
CCleanupParams
CCleanupProcess
CCleanupToolCCleanupTool
CClearFeatureId
CCleave
CCleaveFactoryFactory to return back object for enzyme
CClickableItem
CClickableItemListPanel
CClickableItemPanel
CClickablePairPanel
CClickableText
CClientPseudoDataType
CClientPseudoTypeStrings
CClIncludeCClInclude --
CClInclude_BaseCClInclude_Base --
CClipboard
CClippedScorer
CClockPanelWMClientCClockPanelWMClient
CClockViewCClockView
CClockViewFactoryCClockViewFactory
CClone_refCClone_ref --
CClone_ref_BaseClone-ref ***********************************************
CClone_seqCClone_seq --
CClone_seq_BaseCClone_seq_Base --
CClone_seq_setCClone_seq_set --
CClone_seq_set_BaseCClone_seq_set_Base --
CCloneConcordancySorterCCloneConcordancySorter is a feature sorter used to sort clone features based on clone concordancy
CClonePlacementGlyphCClonePlacementGlyph is similar to CFeatureGlyph, but with different rendering style and settings
CClonePlacementParamsCClonePlacementParams:
CCLRSupportCCLRSupport --
CCLRSupport_BaseNcbi: removed CheckForOverflowUnderflow
CClustalwToolCClustalwTool
CClustalwToolJobCClustalwToolJob
CClustalwToolPanel
CClustalwToolParams
CClustererInterface for CClusterer class used for clustering any type of data based on distance matrix
CClustererApplication
CClustererExceptionExceptions for CClusterer class
CCmdAddCDS
CCmdAddSeqEntry
impl::CCmdBase
CCmdChangeAlign
CCmdChangeBioseqInst
CCmdChangeBioseqSet
CCmdChangeGraph
CCmdChangeSeq_feat
CCmdComposite
CCmdCreateDesc
CCmdCreateFeat
CCmdDelBioseqInst
CCmdDelBioseqSet
CCmdDelDesc
CCmdDelSeq_align
CCmdDelSeq_annot
CCmdDelSeq_feat
CCmdDelSeq_graph
CCmdFactory
CCmdLineArgList
CCmdLineBlastXML2ReportDataStrategy class to gather the data for generating BLAST XML output
CCmdLineBlastXMLReportDataStrategy class to gather the data for generating BLAST XML output
CCmdPropagateFeat
CCmdTableAssignColumn
CCmdTableChangeCell
CCmdTableCopyColumn
CCn3d_backbone_label_styleCCn3d_backbone_label_style --
CCn3d_backbone_label_style_BaseStyle blob for backbone labels
CCn3d_backbone_styleCCn3d_backbone_style --
CCn3d_backbone_style_BaseStyle blob for backbones only
CCn3d_colorCCn3d_color --
CCn3d_color_BaseRGB triplet, interpreted (after division by the scale-factor) as floating point values which should range from [0..1]
CCn3d_general_styleCCn3d_general_style --
CCn3d_general_style_BaseStyle blob for other objects
CCn3d_GL_matrixCCn3d_GL_matrix --
CCn3d_GL_matrix_BaseGL-ordered transformation matrix
CCn3d_molecule_locationCCn3d_molecule_location --
CCn3d_molecule_location_BaseSet of locations on a particular chain
CCn3d_object_locationCCn3d_object_location --
CCn3d_object_location_BaseSet of locations on a particular structure object (e.g., a PDB/MMDB structure), which may include multiple ranges of residues each on multiple chains
CCn3d_residue_rangeCCn3d_residue_range --
CCn3d_residue_range_BaseRange of residues in a chain, identified by MMDB residue-id (e.g., numbered from 1)
CCn3d_style_dictionaryCCn3d_style_dictionary --
CCn3d_style_dictionary_BaseGlobal settings, and a lookup table of styles for user annotations
CCn3d_style_settingsCCn3d_style_settings --
CCn3d_style_settings_BaseRendering settings for Cn3D (mirrors StyleSettings class)
CCn3d_style_settings_setCCn3d_style_settings_set --
CCn3d_style_settings_set_BaseCCn3d_style_settings_set_Base --
CCn3d_style_table_idCCn3d_style_table_id --
CCn3d_style_table_id_BaseCCn3d_style_table_id_Base --
CCn3d_style_table_itemCCn3d_style_table_item --
CCn3d_style_table_item_BaseCCn3d_style_table_item_Base --
CCn3d_user_annotationCCn3d_user_annotation --
CCn3d_user_annotation_BaseInformation for an individual user annotation
CCn3d_user_annotationsCCn3d_user_annotations --
CCn3d_user_annotations_BaseThe list of annotations for a given CDD/mime
CCn3d_vectorCCn3d_vector --
CCn3d_vector_BaseFloating point 3d vector
CCn3d_view_settingsCCn3d_view_settings --
CCn3d_view_settings_BaseParameters used to set up the camera in Cn3D
CCNBr
pythonpp::CCObject
CCObjectClassInfo
CCode_breakCCode_break --
CCode_break_BaseSpecific codon exceptions NCBIstdaa code
CCodeBreakCompare
CCodeBreakEqual
CCodeGenerator
CCodingPropensity
CCodingRegion
CCodonsRecColumn
CCodonsStringListValidator
CCoiledCoil
CColFileReader
CGridHyperlinks::CColHyperlinks
CRemoteAppReaper::CCollector
CCollisionGrid2D< ElemType >Class CCollisionHash2D
CColor_propCColor_prop --
CColor_prop_BaseCColor_prop_Base --
CColorPanel
CColorPickerValidator
CColorTableMethodCColorTableMethod
CColorTableScoringPanelCColorTableScoringPanel - Properties Panel for CColorTableMethod
CColorTwoBase
CQualTableLoadManager::CColumnIdPage
CTableImportWizard::CColumnIdPage
CColumnLayoutCColumnLayout is for creating layout by sorting glyphs into 'columns'
CColumnScoringMethodCColumnScoringMethod
CColumnScoringPanelCColumnScoringPanel
CColumnValidator
CColumnValidatorRegistry
CTableImportWizard::CColumnXFormPage
CCombinatorCall
CComboChartClass CComboChart
CComboChartDataSourceClass CComboChartDataSource
impl::CCommand
CCommandArgDescriptionsCCommandArgDescriptions --
CCommandLineParser
CCommandProcessor
CCommandToFocusHandler
CCommentCComment --
AbstractLexer::CComment
CComment_BaseCComment_Base --
CComment_rule
CComment_rule_BaseCComment_rule_Base --
CComment_set
CComment_set_BaseCComment_set_Base --
CCommentColumn
CCommentConfigCCommentConfig -- help config class for holding a set of settings for a comment glyph
CCommentDescField
CCommentDescriptorTableCommandConverter
CCommentDiagFactory
CCommentDiagHandler
CCommentGlyphCCommentGlyph -- utility class for having comments in graphical glyphs
CCommentItem
CCommentPanel
CComments
CCommonBytes_tableCCommonBytes_table --
CCommonBytes_table_BaseCCommonBytes_table_Base --
CCommonComponentScorer
CCommonString_tableCCommonString_table --
CCommonString_table_BaseCCommonString_table_Base --
CCommonTaxTreeToolCCommonTaxTreeTool
CCompactLayoutCCompactLayout is amed to generate more compact 2D layout policy than layered layout for glyphs with non-uniform height
CCompareByLeafCount< TValue, TKeyGetter >
CCompareCRefUserCall
CCompareFeatsCCompareFeats represens a result of comparison of two features
CCompareSeq_locsCCompareSeq_locs is used for comparing locations of two features on the same coordinate system It is agnostic to what type of feature it is and only compares the internal structure of the locs
CCompareSeqRegionsCompare multiple feature annotations on the specified seq_locs
CCompartApp
CCompartApplication
CCompartApp::CCompartment
CCompartmentFinder< THit >::CCompartmentIndividual compartment representation
CCompartmentAccessor< THit >
CCompartmentFinder< THit >
CCompartOptions
CCompatDiagHandler
CCompatStreamDiagHandler
CCompileCCompile --
CCompile_BaseSource files for compiler
CCompilerToolImplCCompilerToolImpl --
CBlockingQueue< TRequest >::CCompletingHandleIt may be desirable to store handles obtained from GetHandle() in instances of CCompletingHandle to ensure that they are marked as complete when all is said and done, even in the face of exceptions
CBlockingQueue_ForServer::CCompletingHandleIt may be desirable to store handles obtained from GetHandle() in instances of CCompletingHandle to ensure that they are marked as complete when all is said and done, even in the face of exceptions
pythonpp::CComplex
CComplexityMeasure
CComplexRelation
CComponentCComponent --
CComponent_BaseCComponent_Base --
CComponentSearchForm
CComponentSearchJobCComponentSearchJob
CComponentSearchQueryCComponentSearchTool
CComponentSearchToolCComponentSearchTool
CComponentTrackCComponentTrack --
CComponentTrackFactoryCComponentTrackFactory
CComponentVersionInfo
CCompositeAppTaskCCompositeAppTask - an application task that consists of subtasks
CCompositeTextItem
CCompositionBasedStatsArgsArgument class for collecting composition based statistics options
CCompoundIDBase64-encoded ID string that contains extractable typed fields
CCompoundIDDumpParser
CCompoundIDExceptionException class for use by CCompoundIDPool, CCompoundID, and CCompoundIDField
CCompoundIDFieldCompound ID field -- an element of the compound ID that has a type and a value
CCompoundIDPoolPool of recycled CCompoundID objects
CCompoundRegistryCCompoundRegistry --
CCompoundRWRegistryCCompoundRWRegistry --
CCompressedFile
CCompression
CCompressionException
CCompressionFile
CCompressionIOStream
CCompressionIStream
CCompressionOStream
CCompressionProcessor
CCompressionStream
CCompressionStreambuf
CCompressionStreamProcessor
CCompressionUtil
CCompressIStreamCCompressIStream --
CCompressOStreamCCompressOStream --
CCompressStreamCCompressStream --
CCompSpans
CCompVal
CCOMReferenceCCOMReference --
CCOMReference_BaseReference to a COM component
CConcurrentMap< Key, Value, Comparator, Allocator, CntChildsInNode, MaxTreeHeight, DeletionDelay, DelStoreCapacity >
CConditionVariable
CConditionVariableExceptionCConditionVariableException --
CConeCCone --
CCone_BaseCCone_Base --
CConfig
CConfigExceptionCConfigException --
CConfigurationCConfiguration --
CConfiguration_BaseCConfiguration_Base --
CConfigurationImpl< ConfTrait >CConfigurationImpl --
CConfigurationsCConfigurations --
CConfigurations_BaseCConfigurations_Base --
CConfigurationTypeCConfigurationType --
CConfigurationType_BaseNcbi: removed DefaultClientScript ncbi: removed DefaultHTMLPageLayout ncbi: removed DefaultTargetSchema ncbi: removed DefineConstants ncbi: removed DefineDebug ncbi: removed DefineTrace ncbi: removed DelaySign ncbi: removed DisableLangXtns ncbi: removed CodeAnalysisAdditionalOptions ncbi: removed CodeAnalysisApplyLogFileXsl ncbi: removed CodeAnalysisConsoleXsl ncbi: removed CodeAnalysisCulture ncbi: removed CodeAnalysisDependentAssemblyPaths ncbi: removed CodeAnalysisDictionary ncbi: removed CodeAnalysisFailOnMissingRules ncbi: removed CodeAnalysisForceOutput ncbi: removed CodeAnalysisGenerateSuccessFile ncbi: removed CodeAnalysisIgnoreBuiltInRules ncbi: removed CodeAnalysisIgnoreBuiltInRuleSets ncbi: removed CodeAnalysisIgnoreInvalidTargets ncbi: removed CodeAnalysisIgnoreGeneratedCode ncbi: removed CodeAnalysisImport ncbi: removed CodeAnalysisInputAssembly ncbi: removed CodeAnalysisLogFile ncbi: removed CodeAnalysisLogFileXsl ncbi: removed CodeAnalysisModuleSuppressionsFile ncbi: removed CodeAnalysisOverrideRuleVisibilities ncbi: removed CodeAnalysisOutputToConsole ncbi: removed CodeAnalysisVerbose ncbi: removed CodeAnalysisPath ncbi: removed CodeAnalysisPlatformPath ncbi: removed CodeAnalysisProject ncbi: removed CodeAnalysisQuiet ncbi: removed CodeAnalysisRuleAssemblies ncbi: removed CodeAnalysisRuleDirectories ncbi: removed CodeAnalysisRules ncbi: removed CodeAnalysisRuleSet ncbi: removed CodeAnalysisRuleSetDirectories ncbi: removed CodeAnalysisSaveMessagesToReport ncbi: removed CodeAnalysisSearchGlobalAssemblyCache ncbi: removed CodeAnalysisSummary ncbi: removed CodeAnalysisTimeout ncbi: removed CodeAnalysisTreatWarningsAsErrors ncbi: removed CodeAnalysisUpdateProject ncbi: removed CodeAnalysisUseTypeNameInSuppression
CConformation_ensembleCConformation_ensemble --
CConformation_ensemble_BaseCorrelated disorder ensemble is defined by a set of alternate conformation id's which identify coordinates relevant to that ensemble
CConn_FileStream
CConn_FTPDownloadStreamCConn_FtpStream specialization (ctor) for download
CConn_FtpStreamCConn_FtpStream is an elaborate FTP client, can be used for data downloading and/or uploading to and from an FTP server
CConn_FTPUploadStreamCConn_FtpStream specialization (ctor) for upload
CConn_HttpStreamThis stream exchanges data with an HTTP server located at the URL: http[s]://host[:port]/path[?args]
CConn_IOStreamBase class, inherited from "std::iostream", does both input and output, using the specified CONNECTOR
CConn_IOStreamSetReadTimeout
CConn_IOStreamSetTimeout
CConn_IOStreamSetWriteTimeout
CConn_MemoryStreamIn-memory stream (a la strstream or stringstream)
CConn_NamedPipeStreamCConn_NamedPipeStream for inter-process communication
CConn_PipeStreamCConn_PipeStream for command piping
CConn_ServiceStreamThis stream exchanges data with a named service, in a constraint that the service is implemented as one of the specified server "types" (details: <connect/ncbi_server_info.h>)
CConn_SocketStreamThis stream exchanges data in a TCP channel, using socket interface
CConn_Streambuf
impl::CConnectionCConnection::
CConnection
python::CConnection
CConnectPolicyApp
CConnExceptionGeneric CONN exception
CConnHolder
CConnIniterHelper hook-up class that installs default logging/registry/locking (but only if they have not yet been installed explicitly by user) as if by calling CONNECT_Init() automagically
CConnTest
CConnTestThread
CConnValidatorCoRCConnValidatorCoR
NAdapterSearch::CPairedEndAdapterDetector::CConsensusPatternCConsensusPattern calculates most frequent pattern from a set of (noisy) exemplars based on distribution of 10-mer frequencies at every position of the pattern
CConsortiumPanel
CConstBeginInfoClass holding information about root of non-modifiable object hierarchy Do not use it directly
CConstContainerElementIterator
CConstIRef< Interface, Locker >
CContainerTypeInfo::CConstIterator
CStringListCtrl::CConstIterator
CConstObjectInfoCConstObjectInfo --
CConstObjectInfoCVCConstObjectInfoCV --
CConstObjectInfoEICConstObjectInfoEI --
CConstObjectInfoMICConstObjectInfoMI --
CConstraint_choice
CConstraint_choice_BaseCConstraint_choice_Base --
CConstraint_choice_set
CConstraint_choice_set_BaseCConstraint_choice_set_Base --
CConstRef< C, Locker >CConstRef --
CConstRefCSeqId_LessThan
CConstRefTypeInfo< Data >
CConstResizingIterator< TSeq, TOut >
CConstSageData
CConstTreeLevelIteratorClass describing stack level of traversal do not use it directly
CConstTreeLevelIteratorMany< ChildIterator >
CConstTreeLevelIteratorOne
CContact_infoCContact_info --
CContact_info_BaseWho to contact to discuss the submission
CContactPanel
CContainerElementIterator
CContainerTypeInfo
CContainerTypeInfoFunctions
CContElemConverter< TElem >Template<typename TElem> CContElemConverter
CContElemConverter< CCgiEntry >Template<> CContElemConverter<CCgiEntry>
CContElemConverter< objects::CSeq_id_Handle >
CContElemConverter< string >Template<> CContElemConverter<string>
CContentCContent --
CContent_BaseFiles that are not compiled, but may be embedded or published
CContentCheckDialog
CRemoteAppReaper::CContext
variation_ref::CHgvsParser::CContext
variation::CHgvsParser::CContext
CContextTranslatorAuxiliary class to provide convenient and efficient access to conversions between contexts local to query split chunks and the absolute (full, unsplit) query
CContig
CContigAssemblyThis class provides alignment-related functions intended for finding overlaps for contig assembly
CContigItem
CContributing_channelCContributing_channel --
CContributing_channel_BaseChannel donor
CContTextCompleter< Container >
CConversionApp
CConversionOption
CConversionOptionBool
CConversionOptionString
CConversionRef_Less
CConversionResultPanel
CConvert2BlastMaskApplication
CConvert_actionCConvert_action --
CConvert_action_BaseCConvert_action_Base --
CConvert_feature_actionCConvert_feature_action --
CConvert_feature_action_BaseCConvert_feature_action_Base --
CConvert_feature_dst_optionsCConvert_feature_dst_options --
CConvert_feature_dst_options_BaseCConvert_feature_dst_options_Base --
CConvert_feature_src_optionsCConvert_feature_src_options --
CConvert_feature_src_options_BaseCConvert_feature_src_options_Base --
CConvert_from_CDS_optionsCConvert_from_CDS_options --
CConvert_from_CDS_options_BaseFor convert features
CConvertAllAuthorToConsortium
CConvertAuthorToConsortiumWhereConstraint
CConvertBioSrcToRptRegion
CConvertCache
CConvertCDSToGene
CConvertCDSToMiscFeat
CConvertCDSToProt
CConvertCDSToRNA
CConvertComment
CConvertCommentToImp
CConvertFeatDlg
CConvertFeatureBase
CConvertFeatureBaseFactory
CConvertGeneToImp
CConvertGeneToRNA
CConvertImpToCDS
CConvertImpToGene
CConvertImpToImp
CConvertImpToProt
CConvertImpToRNA
CConvertMiscFeatToGene
CConvertmRNAToCDS
CConvertProtToImp
CConvertProtToProt
CConvertRegionToImp
CConvertRegionToProt
CConvertRegionToRna
CConvertRnaToImp
CConvertRNAToRNA
CConvertSiteToImp
CConvertSubpanel
CConvertTable_local
CConvertTextOptionsPanel
value_slice::CConvertTO< CP, TO >
value_slice::CConvertTO< CP, deque< T > >
value_slice::CConvertTO< CP, map< K, V > >
value_slice::CConvertTO< CP, set< T > >
value_slice::CConvertTO< CP, stack< T > >
value_slice::CConvertTO< CP, vector< T > >
CConvertToBond
CConvertToRegion
CConvertToSite
CConverttRNAToGene
CConvGraph
CConvImageApp
value_slice::CConvPolicy< SRunTimeCP, bool >
value_slice::CConvPolicy< SRunTimeCP, CTime >
value_slice::CConvPolicy< SRunTimeCP, double >
value_slice::CConvPolicy< SRunTimeCP, float >
value_slice::CConvPolicy< SRunTimeCP, Int1 >
value_slice::CConvPolicy< SRunTimeCP, Int2 >
value_slice::CConvPolicy< SRunTimeCP, Int4 >
value_slice::CConvPolicy< SRunTimeCP, Int8 >
value_slice::CConvPolicy< SRunTimeCP, long >
value_slice::CConvPolicy< SRunTimeCP, long double >
value_slice::CConvPolicy< SRunTimeCP, string >
value_slice::CConvPolicy< SRunTimeCP, Uint1 >
value_slice::CConvPolicy< SRunTimeCP, Uint2 >
value_slice::CConvPolicy< SRunTimeCP, Uint4 >
value_slice::CConvPolicy< SRunTimeCP, Uint8 >
value_slice::CConvPolicy< SSafeCP, bool >
value_slice::CConvPolicy< SSafeCP, CTime >
value_slice::CConvPolicy< SSafeCP, double >
value_slice::CConvPolicy< SSafeCP, float >
value_slice::CConvPolicy< SSafeCP, Int1 >
value_slice::CConvPolicy< SSafeCP, Int2 >
value_slice::CConvPolicy< SSafeCP, Int4 >
value_slice::CConvPolicy< SSafeCP, Int8 >
value_slice::CConvPolicy< SSafeCP, string >
value_slice::CConvPolicy< SSafeCP, Uint1 >
value_slice::CConvPolicy< SSafeCP, Uint2 >
value_slice::CConvPolicy< SSafeCP, Uint4 >
value_slice::CConvPolicy< SSafeCP, Uint8 >
CCookieAffinity
CGlDrawScale::CCoordConverter
CCoordinatesCCoordinates --
CCoordinates_BaseLiteral coordinates map chemical components into the model space
CCoordMapper_SeqLocMapperCCoordMapper_SeqLocMapper coordinate mapper based on CSeq_Loc_Mapper
CCopy_actionCCopy_action --
CCopy_action_BaseCCopy_action_Base --
CCopyChoiceVariantHookCopy hook for a choice variant (CHOICE)
CCopyClassMemberHookCopy hook for data member of a containing object (eg, SEQUENCE)
CCopyColumnDlg
CCopyObjectHookCopy hook for a standalone object
CCoreBlockCCoreBlock --
CCoreBlock_BaseCCoreBlock_Base --
CCoreDefCCoreDef --
CCoreDef_BaseCCoreDef_Base --
CCoreExceptionCCoreException --
CCorrectRNAStrandDlg
CCounter
CCounterManager
CCountries
CCountryExtreme
CCountryFixup
CCountryLine
CCpGDemoApp
CCpGIslands
CCpgSearchForm
CCpgSearchJobCCpgSearchJob
CCpgSearchQueryCCpgSearchTool
CCpgSearchToolCCpgSearchTool
CCPPCleanCCPPClean --
CCPPClean_Base======================== NATIVE TASKS ============================== ncbi: removed BSCMake
CCPPToolkitConnParams
CCreate_TSA_ids_actionCCreate_TSA_ids_action --
CCreate_TSA_ids_action_BaseCCreate_TSA_ids_action_Base --
CCreate_TSA_ids_srcCCreate_TSA_ids_src --
CCreate_TSA_ids_src_BaseCCreate_TSA_ids_src_Base --
CCreateDataSource_local
CCreatedFeat_Ref
CCreateFeat
CCreateFeatures_local
CCreateGeneModelJobCCreateGeneModelJob
CCreateGeneModelParamsPanel
CCreateGeneModelToolManagerCCreateGeneModelToolManager
CCreateNeedlemanWunschJobCCreateNeedlemanWunschJob
CCreateNeedlemanWunschToolManagerCCreateNeedlemanWunschToolManager
CTraversalNode::CCRefUserCallLessThan
CCriteria_EST_HUMANCCriteria_EST_HUMAN
CCriteria_EST_MOUSECCriteria_EST_MOUSE
CCriteria_EST_OTHERSCCriteria_EST_OTHERS
CCriteria_PDBCCriteria_PDB
CCriteria_REFSEQCCriteria_REFSEQ
CCriteria_REFSEQ_GENOMICCCriteria_REFSEQ_GENOMIC
CCriteria_REFSEQ_RNACCriteria_REFSEQ_RNA
CCriteria_SWISSPROTCCriteria_SWISSPROT
CCriteriaSetCCriteriaSet
CCrossAlignViewCCrossAlignView
CCrossAlignViewFactoryCCrossAlignViewFactory
CCrossAlnDemoAppDerive our application class from CwxNCBIApp and use it together with standard CNCBIwxApplication
CCrossAlnDemoDlg
CCrossAlnPane
CCrossAlnRenderer
CCrossAlnWidget
CCrossPanelIR
CCSRA_DataLoaderCF
CCSraAlignIterator
CCSRABlobId
CCSRADataLoader
CCSRADataLoader_Impl
CCSraDb
CCSraDb_Impl
CCSRAFileInfo
CCSRARefSeqChunkInfo
CCSRARefSeqInfo
CCSraRefSeqIterator
CCSraShortReadIterator
CCSSTableTooltipFormatterTooltips using html tables with css classes from projects/sviewer/css/style.css and generated NCBI URLs are paths (recommended for SViewer)
CCSVExporter
CCtrlItem
CCtxMsg
CCtxMsgString
CCursor
python::CCursor
python::CCursorIter
CCurveBezier
CCurveCubic
CCurVerReader
CCustomBuildCCustomBuild --
CCustomBuild_BaseNCBI modification begin
CCustomBuildStepCCustomBuildStep --
CCustomBuildStep_BaseCCustomBuildStep_Base --
CCustomBuildToolDummyImpl
CCustomErrorHandler
CAgpconvertApplication::CCustomErrorHandler
CCustomFeatureColorFile Description: configuration class for everything needed to render a single feature
CCustomizedFastaReaderCFastaReader-derived class which contains customizations for processing BLAST sequence input
CCvtQryNcbi8naBisulfite< mask, Shift >
CCvtQryNcbi8naEquiv
CCvtQryNcbipnaBisulfite< from, to >
CCvtQryNcbipnaEquiv
CCvtSubjNcbi8naFwd
CCvtSubjNcbi8naRev
CCyclicDependsCCyclicDepends --
CCylinderCCylinder --
CCylinder_BaseCCylinder_Base --
COffsetList::CData
xml::node::cdataHelper struct for creating a xml::node of type_cdata
CData_filterCData_filter --
CData_filter_BaseCData_filter_Base --
CData_set_idCData_set_id --
CData_set_id_BaseCData_set_id_Base --
CData_set_id_typeCData_set_id_type --
CData_set_id_type_BaseCData_set_id_type_Base --
CData_set_id_uidsCData_set_id_uids --
CData_set_id_uids_BaseCData_set_id_uids_Base --
CDatabaseDatabase connection object
CDatabase_refresh_timestampCDatabase_refresh_timestamp --
CDatabase_refresh_timestamp_BaseCDatabase_refresh_timestamp_Base --
CDatabaseError
python::CDatabaseError
CDatabaseImpl
CDataChangeNotifierData notification relay class, sends data change notifications to the subscribed listener
CDataContainerType
python::CDataError
CDatagramSocketCDatagramSocket::
COffsetList::CData::CDataIterator
CDataLoader
CDataLoaderFactory
CDataLoaderPatcher
CDataLoadingAppJobCDataLoadingAppJob - a base class for Jobs loading data into projects
CDataLoadingAppTaskCDataLoadingAppTask - a task that executes CDataLoadingAppJob
CDataMember
CDataMemberContainerType
CDataMiningPanelCDataMiningPanel
CDataMiningServiceCDataMiningService
CDataMiningViewCDataMiningView
CDataMiningViewFactoryCDataMiningViewFactory
COffsetList::CDataPool
CRCache::CDataPool
CDataSequenceType
CDataset_derivationCDataset_derivation --
CDataset_derivation_BaseSource and filtering criteria used to generate dataset
CDataSetType
CDataSource
CDataSource_ScopeInfo
CDataSourceInitializer
CDataSourcesOptionsDlgExtension
CDataSourcesPage
CDataStore
CDataTool
CDatatoolException
CDataToolGeneratedSrc
CDataTrackFile Description:
CDataTrackUtilsUtilities for data/track type discovery
CDataType
CDataTypeModule
CDataValue
CDataValueTmpl< Type >
pythonpp::CDate
CDate
CDate_BaseStringStore is really a VisibleString
CDate_std
CDate_std_BaseNOTE: this is NOT a unix tm struct
CDateItem
pythonpp::CDateTime
python::CDateTimeType
CDB_BCPInCmd
CDB_BigInt
CDB_Binary
CDB_Bit
CDB_Char
CDB_ClientEx
CDB_Connection
CDB_CursorCmd
CDB_DateTime
CDB_DBLB_Delegate
CDB_DeadlockEx
CDB_Double
CDB_DSEx
CDB_ExceptionCDB_Exception --
CDB_Float
CDB_guardAuto-pointer style guard class for DB structure
CDB_Image
CDB_Int
CDB_Int_For< Int4 >
CDB_Int_For< Int8 >
CDB_ITDescriptor
CDB_LangCmd
CDB_LongBinary
CDB_LongChar
CDB_MultiEx
CDB_Numeric
CDB_Object
CDB_ODBC_ConnParams
impl::CDB_Params
CDB_Result
CDB_Result_Reader
CDB_ResultProcessor
CDB_RPCCmd
CDB_RPCEx
CDB_SendDataCmd
CDB_SmallDateTime
CDB_SmallInt
CDB_SQLEx
CDB_Stream
CDB_String
CDB_Text
CDB_TimeoutEx
CDB_TinyInt
CDB_TruncateEx
CDB_UserHandler
CDB_UserHandler_Deferred
CDB_UserHandler_Diag
CDB_UserHandler_Exception
CDB_UserHandler_Exception_ODBC
CDB_UserHandler_Stream
CDB_UserHandler_Wrapper
CDB_VarBinary
CDB_VarChar
CDBAPI_BlobCacheCFClass factory for DBAPI BLOB cache
CDBAPI_CacheDBAPI cache implementation
CDBAPI_CacheAdminDBAPI cache administration tool
CDBAPI_CacheIReader
CDBAPI_CacheIWriter
CDBAPI_CursorGuardGuard class, closes cursor on destruction
CDBAPI_ICacheExceptionDBAPI ICache exception
CDBAPI_TransGuardTransaction Guard class
CDbapiAuxDeletedEvent
CDbapiBcpApp
CDBAPIBulkInsertClass has deliberately obscure name to not mix it with CBulkInsert in SDBAPI and to avoid direct usages
CDbapiClosedEvent
CDbapiConnMgrCDbapiConnMgr
CDbapiCtlibCF_Sybase
CDbapiCtlibCFBase
CDbapiCursorApp
CDbapiDblibCF2
CDbapiDeletedEvent
CDbapiDriverSampleApp
CDbapiEvent
CDbapiException
CDbapiFetchCompletedEvent
python::CDBAPIModule
CDbapiMySqlCF2
CDbapiNewResultEvent
CDbapiOdbcCF
CDbapiOdbcCFBase
CDbapiQueryApp
CDbapiSampleApp
CDbapiSampleErrHandler
CDbapiSendDataApp
CDbapiSimpleApp
CDbapiTest
CDbapiTestSpeedApp
impl::CDBBindedParams
CDBConnectionFactory
CDBConnParamsCDBConnParams::
impl::CDBConnParamsBaseImpl::CDBConnParamsBase::
CDBConnParamsBaseCDBConnParamsBase::
CDBConnParamsDelegate
CDbCopyApp
CDBDefaultConnParamsCDBDefaultConnParams::
CDBDefaultServiceMapperCDBDefaultServiceMapper
CDBEnvConnParams
CDbEquals
impl::CDBExceptionStorage
CDBGiveUpFactoryCDBGiveUpFactory
impl::CDBHandlerStack
CDbIndexBase class providing high level interface to index objects
CDbIndex_ExceptionTypes of exception the indexing library can throw
CDbIndex_FactoryIndex factory implementation
CDbIndex_Impl< LEGACY >Implementation of the BLAST database index
CDbIndex_Traits< LEGACY >Some computed type definitions
CDbInfoCDbInfo --
CDbInfo_BaseCDbInfo_Base --
CDBInterfacesFileConnParams
CDBL_BCPInCmdCDBL_BCPInCmd::
CDBL_BlobResultCDBL_BlobResult::
CDBL_CmdCDBL_Cmd::
CDBL_ComputeResultCDBL_ComputeResult::
CDBL_ConnectionCDBL_Connection::
CDBL_CursorCmdCDBL_CursorCmd::
CDBL_CursorResultCDBL_CursorResult::
CDBL_ITDescriptor
CDBL_LangCmdCDBL_LangCmd::
CDBL_ParamResultCDBL_ParamResult::
CDBL_ResultCDBL_Result
CDBL_ResultBaseCDBL_ResultBase::
CDBL_RowResultCDBL_RowResult::
CDBL_RPCCmdCTL_RPCCmd::
CDBL_SendDataCmdCDBL_SendDataCmd::
CDBL_StatusResultCDBL_StatusResult::
CdBlaster
CDBLibContext
CDblibContextRegistry
CDBLink
CDBLink_field_pairCDBLink_field_pair --
CDBLink_field_pair_BaseCDBLink_field_pair_Base --
CDBLinkField
CDBLinkPanel
CDBLinkTableCommandConverter
CDbListCDbList --
CDbList_BaseCDbList_Base --
CDBParamsCDBParams
CDBParamVariant
CDBRedispatchFactoryCDBRedispatchFactory
CDBServerIDBServiceMapper
CDBServiceMapperCoRCDBServiceMapperCoR
CDBServiceMapperTraits< T >DBServiceMapperTraits IDBServiceMapper traits
CDBServiceMapperTraits< CDBDefaultServiceMapper >
CDBServiceMapperTraits< CDBServiceMapperCoR >
CDBServiceMapperTraits< CDBUDPriorityMapper >
CDBServiceMapperTraits< CDBUDRandomMapper >
CDBServiceMapperTraits< CDBUniversalMapper >
CDBSourceItem
CDbtag
CDbtag_BaseDbtag is generalized for tagging eg
CDbTest
CDBUDPriorityMapperCDBUDPriorityMapper
CDBUDRandomMapperCDBUDRandomMapper
CDBUniversalMapper
CDBUriConnParams
CDbvarClinicalAsstSorterCDbvarClinicalAsstSorter is a feature sorter used to sort variant features based on variant quality
CDbvarPilotSorterCDbvarPilotSorter is a feature sorter used to sort variant features based on variant pilot number
CDbvarQualitySorterCDbvarQualitySorter is a feature sorter used to sort variant features based on variant quality
CDbvarSamplesetTypeSorterCDbvarSamplesetTypeSorter is a feature sorter used to sort variant features based on variant quality
CDbvarValidationSorterCDbvarValidationSorter is a feature sorter used to sort variant features based on variant quality
CDbXrefColumn
CDbxrefPanel
CDDAnnotateDialog
CDDBookRefDialog
CDDEvidenceDialog
CDDRefDialog
CDDSplashDialog
CDDTypedAnnotDialog
CDDV_DDX_ExceptionCDDV_DDX_Exception
CDockManager::CDeadFrameDescr
CDeadlineCDeadline
CDebugArgsArgument class to collect debugging options
CDebugDumpable
CDebugDumpContext
CDebugDumpFormatter
CDebugDumpFormatterText
CDebugDumpViewer
CDebugMacroToolCDebugMacroTool
CDebugMacroToolJobCDebugMacroToolJob
CDebugMacroToolPanel
CDebugMacroToolParams
CReader::CDebugPrinter
CDebugSymbolsCDebugSymbols --
CDebugSymbols_BaseNcbi: removed ConfigurationName ncbi: removed ConfigurationOverrideFile ncbi: removed CreateDesktopShortcut ncbi: removed CreateWebPageOnPublish ncbi: removed CurrentSolutionConfigurationContents ncbi: removed DebugSecurityZoneURL
CDebugTypeCDebugType --
CDebugType_BaseNone, pdbonly, or full
CDecompressIStreamCDecompressIStream --
CDecompressOStreamCDecompressOStream --
CDefault_Mapper_Sequence_Info
CDefaultConnectPolicy
CDefaultDriverVersion< TInterface >
CDefaultIdlerDefault idler
CDefaultLengthGetter
CDefaultNodeKeyGetter< TValue >Bi-directionaly linked N way tree
CDefaultSpotIdDetector
CDefaultSynonymMapper
CDefaultUrlEncoderDefault encoder, uses the selected encoding for argument names/values and eUrlEncode_Path for document path
CDefaultWorkerNodeInitContextDefault implementation of a worker node initialization interface
CDefinitionLineField
CDeflineGeneratorClass for computing sequences' titles ("definitions")
CDeflineItem
CDeflineProcess
CDelayBufferCDelayBuffer
CDelayedOfstream
CDeleteFromBioseq_setDlg
CDeleteQueue< Key, Value >
CDeleter< X >Functor template for the C language deallocation function, free()
CQualTableLoadManager::CDelimitersPage
CTableImportWizard::CDelimitersPage
CCharHistogram::CDelimScoreHolds all scoring parameters for a given character
CDelta_ext
CDelta_ext_BaseCDelta_ext_Base --
CDelta_ext_PackTarget
CDelta_itemCDelta_item --
CDelta_item_BaseCDelta_item_Base --
CDelta_seqCDelta_seq --
CDelta_seq_BaseCDelta_seq_Base --
CDeltaBlastA simple realization of the DELTA-BLAST algorithm: seacrch domain database, compute PSSM, search sequence database
CDeltaBlastApp
CDeltaBlastAppArgsHandle command line arguments for deltablast binary
CDeltaBlastArgsArgument class to collect options specific to DELTA-BLAST
CDeltaBlastOptionsHandleHandle to the protein-protein options to the BLAST algorithm
CDeltaBlastTestFixture
CDemoAlignScorePropsAppDerive our application class from CwxNCBIApp and use it together with standard CNCBIwxApplication
CDemoAlignTableApp/////////////////////////////////////////////////////////////////////////// Derive our application class from CwxNCBIApp and use it together with standard CNCBIwxApplication
CDemoAppDerive our application class from CwxNCBIApp and use it together with standard CNCBIwxApplication
CDemoApplication
CDemoContigAssemblyApp
CDemoeApp
CDemoFeatTableApp/////////////////////////////////////////////////////////////////////////// Derive our application class from CwxNCBIApp and use it together with standard CNCBIwxApplication
CDemoHandler_EmptyOnOverflow
CDemoHandler_HeapAlloc
CDemoHandler_MemSize
CDemoHook
CDemoSeqQaApp
CDenMapRunIterator< CntType >Run iterator. iterate through runs of equal values in the bins
CDense_diag
CDense_diag_BaseFor (multiway) diagonals
CDense_seg
CDense_seg_BaseDense-seg: the densist packing for sequence alignments only
CDenseg_CIImplementation of IAlnSegmentIterator for CDense_seg
CDensegGraphicDataSourceThis class is intended to be used for pairwised dense-seg seq-align to replace CSparseAlnGraphicDataSource to improve performance
CDensegSegmentImplementation of IAlnSegment for CDenseg_aln
CDenseSegHitWraps a CSeq_align containing CDense_seg and provides a simple API for interpreting it as a pairwise alignment of two sequences
CDenseSegHitElementCDenseSegHitElement - IHitElement implementation for CDense_seg-based alignments
CDenseSegReserveLensHook
CDenseSegReserveStartsHook
CDenseSegReserveStrandsHook
CDensity_coordinatesCDensity_coordinates --
CDensity_coordinates_BaseLiteral density coordinates define the chemical components whose structure is described by a density grid, parameters of this grid, and density values
CDensityMap< CntType >Class CDensityMap generates a low-resolution view of a set of features
CDensityMapDSCDensityMapDS
CDependent_field_rule
CDependent_field_rule_BaseCDependent_field_rule_Base --
CDependent_field_setCDependent_field_set --
CDependent_field_set_BaseCDependent_field_set_Base --
CDeployDirSuffixCDeployDirSuffix --
CDeployDirSuffix_BaseCDeployDirSuffix_Base --
CDepthCollection
CTraversalNode::CDepthFirstCallback
CDesc_EditCommand< TEditHandle, add >
CTraversalSpecFileParser::CDescFileNode
CDescPlacementPanel
pythonpp::CDescr
CDescriptionCDescription --
CDescription_BaseCDescription_Base --
CDescriptionColumn
CDescriptionTextCDescriptionText --
CDescriptionText_BaseCDescriptionText_Base --
CDescriptorTextPanel
CDFamily
CDiagAutoPrefixCDiagAutoPrefix --
CDiagCollectGuardGuard for collecting diag messages (affects the current thread only)
CDiagCompileInfoIncapsulate compile time information such as __FILE__, __LINE__, NCBI_MODULE, current function
CDiagConsoleCacheCDiagConsoleCache
CDiagConsoleListCDiagConsoleList
CDiagConsolePanelCDiagConsolePanel
CDiagConsoleViewCDiagConsoleView
CDiagConsoleViewFactoryCDiagConsoleViewFactory
CDiagContext
CDiagContext_ExtraTemporary object for holding extra message arguments
CDiagContextThreadDataThread local context data stored in TLS
CDiagErrCodeInfoCDiagErrCodeInfo --
CwxLogDiagHandler::CDiagEventEvent for child notification
CDiagFactoryCDiagFactory --
CDiagFileHandleHolder
CDiagFilterCDiagFilter --
CDiagHandler
CDiagHit
CDiagHitElementCDiagHitElement - IHitElement implementation for CDense_seg-based alignments
CDiagLevelGuard
CDiagLexParserCDiagLexParser --
CDiagLock
CDiagMatcherCDiagMatcher --
CAligner::CDiagonalScores
CDiagRangeCollection
CDiagRecycler
CDiagRestorerCDiagRestorer --
CDiagStrEmptyMatcherCDiagStrEmptyMatcher --
CDiagStrErrCodeMatcherCDiagStrErrCodeMatcher --
CDiagStrMatcherCDiagStrMatcher --
CDiagStrPathMatcherCDiagStrPathMatcher --
CDiagStrStringMatcherCDiagStrStringMatcher --
CDiagSyntaxParserCDiagSyntaxParser --
CDialogCDialog
CDibaseScore< TCvtQry, TCvtSubj >
CDibaseScore_Base
pythonpp::CDict
pythonpp::CDictHelper< T >
CDictionaryUtilStandard dictionary utility functions
pythonpp::CDictProxy< T >
CDiffCDiff -- Diff and compare strings (character mode)
CDiffBaseCDiffBase -- Diff and compare texts (base class)
CDiffExceptionCDiffException --
CDiffListCDiffList -- the list of diff operations
CDiffOperationCDiffOperation -- The storage class for one diff operation
CDiffTextCDiffText -- Diff and compare texts (line mode)
CDirCDir --
CDirEntryCDirEntry --
CDirTest
CDiscNucleotideOptionsHandleHandle to the nucleotide-nucleotide options to the discontiguous BLAST algorithm
CDiscontiguousMegablastArgsArgument class to retrieve discontiguous megablast arguments
CDiscRepApp
CDiscRepConf
CDiscRepConfPage
CDiscRepDlgVw
CDiscRepInfo
CDiscRepOutput
CDiscreteDistributionThis class generates a random integer from a series of ranges defined as follows: 5, 6 - 9, 10 - 50
CDiscTestInfo
CDiskFlusher
CDisplayMacros_dlg
CDisplayOptionsCDisplayOptions --
CDisplayOptions_BaseCDisplayOptions_Base --
CDisplayOptionSetCDisplayOptionSet --
CDisplayOptionSet_BaseCDisplayOptionSet_Base --
CDisplaySeqalign
CDistanceMatrix
CDistanceMatrix_BaseCDistanceMatrix_Base --
CDistanceMatrixHandlerCDistanceMatrix label handler
CDistancesRepresentation of pairwise distances, intended for use in multiple sequence alignment applications
CDistBasedClusterer
CPhyTreeCalc::CDistMatrixDistance matrix (square, symmetric with zeros on diagnol)
CDistMethods
CDistribution_pointCDistribution_point --
CDistribution_point_BaseCDistribution_point_Base --
CDL_AssemblyCDL_Assembly --
CDL_Assembly_BaseCDL_Assembly_Base --
CDL_AssmInfoCDL_AssmInfo --
CDL_AssmInfo_BaseCDL_AssmInfo_Base --
CDL_AssmInfoResponseCDL_AssmInfoResponse --
CDL_AssmInfoResponse_BaseCDL_AssmInfoResponse_Base --
CDL_TaxIdCDL_TaxId --
CDL_TaxId_BaseCDL_TaxId_Base --
CDlgVwWithNav
CDlgVwWithNavCmdHandler
CDllCDll --
CDllResolverClass for entry point resolution when there are several DLL candidates
CDllResolver_Getter< TClass >Template function to create dll resolver for interface
CDllResolver_Getter< I_DriverContext >
CDllResolver_Getter< IBlobStorage >
CDllResolver_Getter< ICache >
CDllResolver_Getter< objects::CDataLoader >
CDllResolver_Getter< objects::CReader >
CDllResolver_Getter< objects::CWriter >
CDllResolver_Getter< objects::IEditSaver >
CDllResolver_Getter< objects::IEditsDBEngine >
CDllSrcFilesDistrDistribution if source files by lib projects Uses in dll project to separate source files to groups by libs
CDLPatcher_DataLoaderCFData Loader Factory for BlastDbDataLoader
python::CDMLConnPool
CDMSearchProgressCDMSearchProgress CDMSearchProgress represents the specialized progress report that may contain intermediate data mining results
CDMSearchResultCDMSearchResult - result object delivered using job progress object
CDMToolSelectorCDataMiningService
CdnaWithHole
CDNode
CDockContainerCDockContainer is a window that hosts docked windows
CDockLayoutTreeCDockLayoutTree - represents hierarchical layout in a Dock Container as a tree where nodes correspond to windows
CDockManagerCDockManager CDockManager sends requests to Window Manager, Window Manager makes decisions about deleting clients and calls Dock Manager functions
CDockMarkerWindowCDockMarkerWindow - top level window with docking markers displayed on top of the application window
CDockNotebookCDockNotebook - an extended version of wxAuiNotebook capable of working with Dock Manager and Window Manager
CDockNotebookTabArtCDockNotebookTabArt - a customized version of wxAuiSimpleTabArt that renders background differently
CDockPanelCDockPanel - a container with a title bar (caption) hosting a single client window (IWMClient)
CDockSplitterCDockSplitter = an extended version of CSplitter capable of working with Dock Manager and Window Manager
CDocLoadingJob
CDocRefCDocRef --
CDocRef_BaseReference to a document
CDocSum
CDocSum_BaseCDocSum_Base --
CDocsumTableModel
CDOICDOI --
CDOI_BaseDocument Object Identifier
CDomain_parentCDomain_parent --
CDomain_parent_BaseDomain-parent records an evolutionary relationship which may not be as simple as a classical parent-child relationship in a typical hierarchy, i.e
CDonorAcceptorMatrix
CDotMatrixPanelCDotMatrixPanel
CDotMatrixViewCDotMatrixView
CDotMatrixViewFactoryCDotMatrixViewFactory
CDotMatrixViewManagerCDotMatrixViewManager
CDoubleStrandSeq
CDoubleValueHolder
CDownloadJob::CDownloadCallbackData
CDownloadJobJob to download tarball archive
CdPssmInput
CDrawTextOStream
CDRefresher
impl::CDriverContextCDriverContext::
CDriverManager
CBamLoadOptionPanel::CDropTarget
CMultiFileInput::CDropTarget
CDSAnnotLockReadGuard
CDSAnnotLockWriteGuard
CdsNumOrder
CdTreeStream
CDummyGlyphDummy concreate glyph class for layout purpose
CDummyLayoutObject
CDummyLengthGetter
CDummyObsoleteTypeCDummyObsoleteType --
CDummyObsoleteType_BaseA dummy type used for replacing 'removed' or deprecated optional fields that have not been used and won't be used any more
CDummySynonymMapper
CDummyTrackA dummy layout track for showing an empty area
CDumpSequences_wRanges
CDumpSysInfo
CdUpdateParameters
CDUpdater
CDUpdateStats
CDustMaskApplication
CDynamicCharArray
CE2ReplyCE2Reply --
CE2Reply_BaseCE2Reply_Base --
CE2RequestCE2Request --
CE2Request_BaseRequest types
CEaaToIupacaa
CEaaToStdaa
CECNumbersPanel
CEdit_actionCEdit_action --
CEdit_action_BaseCEdit_action_Base --
CEdit_feature_location_actionCEdit_feature_location_action --
CEdit_feature_location_action_BaseCEdit_feature_location_action_Base --
CEdit_location_strandCEdit_location_strand --
CEdit_location_strand_BaseCEdit_location_strand_Base --
CEditAppJobCEditAppJob - a base class for Jobs modifying existing data in projects
CEditAppTaskCDataLoadingAppTask - a task that executes CDataLoadingAppJob
CEditBioseqSampleApp
CEditEventClass CEditEvent defines a single type for all editing events
CEditException
CEditFeatLocPanel
CEditingBtnsEvent
CEditingBtnsPanel
CEditingBtnsToolCEditingBtnsTool
CEditingBtnsViewCEditingBtnsView
CEditingBtnsViewFactoryCEditingBtnsViewFactory
CEditMacroDlg
CEditObject
CEditObjectDlg
CEditObjectFeaturePropagate
CEditObjectSeq_desc
CEditObjectSeq_feat
CEditObjectSubmit_block
CEditPubDlg
CEditScriptInterface for the traceback from blast hits
CEditsSaver
CEditSubpanel
CEditTextOptionsPanel
CEFetch_Literature_RequestCEFetch_Literature_Request
CEFetch_RequestCEFetch_Request
CEFetch_Sequence_RequestCEFetch_Sequence_Request
CEFetch_Taxonomy_RequestCEFetch_Taxonomy_Request
CEffectiveSearchSpaceCalculatorAuxiliary class to compute the effective search space
CEffectiveSearchSpacesMementoMemento class to save, replace out, and restore the effective search space options of the CBlastOptions object passed to its constructor
CEGQuery_RequestCEGQuery_Request
CEGQueryResultCEGQueryResult --
CEGQueryResult_BaseCEGQueryResult_Base --
CEHistory_RequestCEHistory_Request
CEHistoryItemCEHistoryItem --
CEHistoryItem_BaseCEHistoryItem_Base --
CEHistoryResultCEHistoryResult --
CEHistoryResult_BaseCEHistoryResult_Base --
CEInfo_RequestCEInfo_Request
CEInfoResultCEInfoResult --
CEInfoResult_BaseCEInfoResult_Base --
CEJournalSearch
CElementaryMatching
CELink_RequestCELink_Request
CELinkResultCELinkResult --
CELinkResult_BaseCELinkResult_Base --
Cell
CEmailDiagFactory
CEmailDiagHandler
CEmbeddedResourceCEmbeddedResource --
CEmbeddedResource_BaseResources to be embedded in the generated assembly
CEmbedInteropTypesCEmbedInteropTypes --
CEmbedInteropTypes_BaseWhether the types in this reference need to embedded into the target assembly - interop asemblies only (optional, boolean)
CEmbedManifestCEmbedManifest --
CEmbedManifest_BaseCEmbedManifest_Base --
CEMBL_blockCEMBL_block --
CEMBL_block_BaseCEMBL_block_Base --
CEMBL_dbnameCEMBL_dbname --
CEMBL_dbname_BaseCEMBL_dbname_Base --
CEMBL_xrefCEMBL_xref --
CEMBL_xref_BaseCEMBL_xref_Base --
CEmblFormatter
CEmblGatherer
CEmptyToDash< Other >
CEmptyUrlEncoderPrimitive encoder - all methods return the argument value
CEnableSecurityDebuggingCEnableSecurityDebugging --
CEnableSecurityDebugging_BaseCEnableSecurityDebugging_Base --
CEnableSQLServerDebuggingCEnableSQLServerDebugging --
CEnableSQLServerDebugging_BaseNcbi: removed DocumentationFile ncbi: removed EnableASPDebugging ncbi: removed EnableASPXDebugging
CEnableUnmanagedDebuggingCEnableUnmanagedDebugging --
CEnableUnmanagedDebugging_BaseCEnableUnmanagedDebugging_Base --
CEncodedStringCEncodedString --
CEndItem
CEndSectionItem
CEndsTest
pythonpp::CEngine
CEntrez2_boolean_elementCEntrez2_boolean_element --
CEntrez2_boolean_element_BaseCEntrez2_boolean_element_Base --
CEntrez2_boolean_expCEntrez2_boolean_exp --
CEntrez2_boolean_exp_BaseThe structured form of the boolean is the same in a request or return so that it easy to modify a query
CEntrez2_boolean_replyCEntrez2_boolean_reply --
CEntrez2_boolean_reply_BaseCEntrez2_boolean_reply_Base --
CEntrez2_boolean_termCEntrez2_boolean_term --
CEntrez2_boolean_term_BaseTerm is both sent and received as parts of queries and replies
CEntrez2_db_idCEntrez2_db_id --
CEntrez2_db_id_BaseDatabase name
CEntrez2_db_infoCEntrez2_db_info --
CEntrez2_db_info_BaseInfo for one database
CEntrez2_docsum
CEntrez2_docsum_BaseCEntrez2_docsum_Base --
CEntrez2_docsum_dataCEntrez2_docsum_data --
CEntrez2_docsum_data_BaseCEntrez2_docsum_data_Base --
CEntrez2_docsum_field_infoCEntrez2_docsum_field_info --
CEntrez2_docsum_field_info_BaseCEntrez2_docsum_field_info_Base --
CEntrez2_docsum_listCEntrez2_docsum_list --
CEntrez2_docsum_list_BaseCEntrez2_docsum_list_Base --
CEntrez2_docsumHandler
CEntrez2_dtCEntrez2_dt --
CEntrez2_dt_BaseEntrez2 common elements
CEntrez2_dt_filterCEntrez2_dt_filter --
CEntrez2_dt_filter_BaseCEntrez2_dt_filter_Base --
CEntrez2_eval_booleanCEntrez2_eval_boolean --
CEntrez2_eval_boolean_BaseWhen evaluating a boolean query the counts of hits is always returned
CEntrez2_field_idCEntrez2_field_id --
CEntrez2_field_id_BaseField name
CEntrez2_field_infoCEntrez2_field_info --
CEntrez2_field_info_BaseInfo about one field
CEntrez2_get_linksCEntrez2_get_links --
CEntrez2_get_links_BaseRequest links of one type
CEntrez2_hier_nodeCEntrez2_hier_node --
CEntrez2_hier_node_BaseFor hierarchical index
CEntrez2_hier_queryCEntrez2_hier_query --
CEntrez2_hier_query_BaseCEntrez2_hier_query_Base --
CEntrez2_idCEntrez2_id --
CEntrez2_id_BaseSingle UID
CEntrez2_id_list
CEntrez2_id_list_BaseList of record UIDs
CEntrez2_infoCEntrez2_info --
CEntrez2_info_BaseDescribes all the databases
CEntrez2_limitsCEntrez2_limits --
CEntrez2_limits_BaseDate limits
CEntrez2_link_countCEntrez2_link_count --
CEntrez2_link_count_BaseLink count of one type
CEntrez2_link_count_listCEntrez2_link_count_list --
CEntrez2_link_count_list_BaseAll links from 1 uid
CEntrez2_link_idCEntrez2_link_id --
CEntrez2_link_id_BaseLink name
CEntrez2_link_infoCEntrez2_link_info --
CEntrez2_link_info_BaseInfo about one link
CEntrez2_link_setCEntrez2_link_set --
CEntrez2_link_set_BaseLinks are returned in sets also using OCTET STRINGS
CEntrez2_replyCEntrez2_reply --
CEntrez2_reply_BaseReplies from the Entrez server all replies contain the date/time stamp when they were executed to do reqular date bounded searches use this value+1 to search again later instead of recording the date/time on the client machine the cookie allows a simple key string to represent UID lists in the history
CEntrez2_requestCEntrez2_request --
CEntrez2_request_BaseEntrez2 Request types
CEntrez2_termCEntrez2_term --
CEntrez2_term_BaseCEntrez2_term_Base --
CEntrez2_term_listCEntrez2_term_list --
CEntrez2_term_list_BaseCEntrez2_term_list_Base --
CEntrez2_term_posCEntrez2_term_pos --
CEntrez2_term_pos_BaseRequest portions of term list
CEntrez2_term_queryCEntrez2_term_query --
CEntrez2_term_query_BaseCEntrez2_term_query_Base --
CEntrez2Client
CEntrez2Client_BaseCEntrez2Client_Base --
CEntrez2ClientApp
CEntrez_generalCEntrez_general --
CEntrez_general_BaseCEntrez_general_Base --
CEntrezCacheClass CEntrezCache provides a simple, thread-safe interface for storing the temporary results of queries to Entrez using CEntrez2Client
CEntrezDBCEntrezDB
CEntrezgeneCEntrezgene --
CEntrezgene_BaseEntrezgene is the "document" indexed in Entrez and presented in the full display It also contains the Entrez ID and date information
CEntrezgene_SetCEntrezgene_Set --
CEntrezgene_Set_BaseCEntrezgene_Set_Base --
CEntrezgene_SetHandlerCEntrezgene_Set label handler
CEntrezgeneHandlerCEntrezgene label handler
CEntrezSearchFormCTestSearchForm
CEntrezSearchJobCEntrezSearchJob
CEntrezSearchQueryCEntrezSearchTool
CEntrezSearchToolCEntrezSearchTool
CEntropyCalculator
CEntryCollector_Base
CEnumDataType
CEnumDataTypeValue
CEnumeratedTypeInfo
CEnumeratedTypeValues
CEnumParser< TEnum, TParam >
CEnumRefTypeStrings
CEnumTypeStrings
CEnvironmentCleanerCEnvironmentCleaner --
pythonpp::CEnvironmentError
CEnvironmentRegistryCEnvironmentRegistry --
CEnzymatic_search_constraintCEnzymatic_search_constraint --
CEnzymatic_search_constraint_BaseRequired peptide termini
pythonpp::CEOFError
CEofException
CEpigenomicsDSCEpigenomicsDS - Epigenomics data source
CEpigenomicsDSTypeCEpigenomicsDSType - Epigenomics data source type
CEpigenomicsJobCEpigenomicsJob
CEpigenomicsTrackCEpigenomicsTrack -- A special track for showing epigenomics map
CEpigenomicsTrackFactoryCEpigenomicsTrackFactory
CEPost_RequestCEPost_Request
CEPostResultCEPostResult --
CEPostResult_BaseCEPostResult_Base --
CEquivRange
CEquivRangeBuilder
CEResidueVec
CErrCErr --
CErr_BaseCErr_Base --
CErrHandler
CErrnoAdapt
CErrnoTemplException< TBase >CErrnoTemplException --
CErrnoTemplException_Win< TBase >
CErrnoTemplExceptionEx< TBase, PErrCode, PErrStr >CErrnoTemplExceptionEx --
python::CError
pythonpp::CError
CError_pointCError_point --
CError_point_BaseCError_point_Base --
CErrorContainerBase
CErrorContainerCount
CErrorContainerLenient
CErrorContainerLevel
CErrorContainerStrict
CErrorContainerWithLog
CAgpConverter::CErrorHandlerSubclass this to override how errors are handled (example: to stop early on some kinds of errors)
CErrorListCErrorList --
CErrorList_BaseCErrorList_Base --
CErrorLogger
CErrorReportCErrorReport --
CErrorReport_BaseCErrorReport_Base --
CErrorReportUrlCErrorReportUrl --
CErrorReportUrl_BaseCErrorReportUrl_Base --
pythonpp::CErrorStackElem
CESearch_RequestCESearch_Request
CESearchGeneric
CESearchResultCESearchResult --
CESearchResult_BaseCESearchResult_Base --
CESpell_RequestCESpell_Request
CESpellResultCESpellResult --
CESpellResult_BaseCESpellResult_Base --
CESummary_RequestCESummary_Request
CESummaryGeneric
CESummaryResultCESummaryResult --
CESummaryResult_BaseCESummaryResult_Base --
CEUtils_ConnContextCEUtils_ConnContext
CEUtils_IdGroupCEUtils_IdGroup
CEUtils_IdGroupSetCEUtils_IdGroupSet
CEUtils_RequestCEUtils_Request
CEUtilsApp
CEUtilsGeneric
CEUtilsProcess
CEventCEvent - generic event implementation TODO TODO - Attachments
CAlnMultiPane::CEvent
CEventAttachmentFor< T >Templatized IEventAttachment wrapper
CEventHandlerCEventHandler
CwxGridTableAdapter::CEventHandler
SNetCacheServiceAutomationObject::CEventHandler
SNetScheduleServiceAutomationObject::CEventHandler
CEventLogServiceCEventLogService - the standard implementation of IEventLogService
CEventRecordCEventRecord - standard implementation of IEventRecord
CEventRecordDetailsDlgCEventRecordDetails
CEventTablePanelCEventTablePanel - the table displaying events; used in Event View
CEventViewCEventView - system view that displays events from Event Logging Service
CEventViewFactoryCEventViewFactory - factory for creating Event View
CEventViewModelCEventViewModel - a model for Event View table
CEvidenceBasisCEvidenceBasis --
CEvidenceBasis_BaseCEvidenceBasis_Base --
CEvidenceColumn
CExceptionCException --
CExceptionArgs< TErrCode >
CExceptionArgs_Base
CExceptionArgsManip
CExceptionArgsManip_WrapperManipulator function wrapper
CExceptionColumn
CExceptionReporterCExceptionReporter --
CExceptionReporterStreamCExceptionReporterStream --
CExceptionWrapper
CExchangeSetCExchangeSet --
CExchangeSet_BaseSet of dbSNP refSNP docsums, version 3.4
CExecCExec --
CExecAndParseStructuredOutput
CExecExceptionCExecException --
CExecJob
CExecute
CGBDocument::CExecuteAsync
CBLAST_DB_Dialog::CExecuteAsync_CreateItemsPrivate async class to off-load GUI
CExecuteUnitAsyncCall
NWinHook::CExeModuleInstanceClass CExeModuleInstance
CExistingTextDlg
CProcess::CExitInfoExtended exit information for waited process
CExitThreadException
CExon
CExon_paramsCExon_params --
CExon_params_BaseCExon_params_Base --
CExonParameters
CExpandAllState
CPhyTreeFormatter::CExpanderTree visitor class, expands all nodes and corrects node colors
CExpandGlyph
CExpandItem
CExpandSeqsTraverser
CExpandTraverser
CExpansionRule
CExpansionScorer
CExpectedError
CExperimentsPanel
CExperimentSupportCExperimentSupport --
CExperimentSupport_BaseCExperimentSupport_Base --
CExpiredCleaner
CExplorerItemCExplorerItem - an abstract item in Application Explorer icons are represented as integers - indexes in the tree image list
CExplorerItemDataCExplorerItemData - tree item attachment pointing back to CExplorerItem
CExplorerItemEx< TData >
CExportStrategy
CExprParser
CExprParserException
CExprSymbol
CExprValue
CExt_locCExt_loc --
CExt_loc_BaseCExt_loc_Base --
CExtend_to_featureCExtend_to_feature --
CExtend_to_feature_BaseCExtend_to_feature_Base --
CExtensionDeclarationCExtensionDeclaration - static declaration helper
CExtensionPointCExtensionPoint - standard implementation of IExtensionPoint
CExtensionPointDeclarationCExtensionPointDeclaration - static declaration helper
CExtensionRegistryCExtensionRegistry - standard implementation of IExtensionRegistry
IPhyloTreeRender::CExtentDimensionThis is a set of positions (for nodes) and associated x or y pixel offset values
CExternalLayoutTrackCExternalLayoutTrack -- the layout track for holding and visualizing the external graphical views' visible ranges
CExternalLayoutTrackFactoryCExternalLayoutTrackFactory
pythonpp::CExtModule< T >
pythonpp::CExtObject< T >
CExtraDecoder
CExtraEncoder
CExtraEntryCollector
CExtraFeaturePanel
pythonpp::CExtType
CFactory< Type >
CFaDiceApp
CFakeRCUUser
CSimpleSeg_CI::CFakeSegment
CFastaAlignmentBuilderHelper class to build pairwise alignments, with double gaps automatically spliced out
CFastaBioseqSource
CFastaExporter
CFastaExporterFactory
CFastaExportJobCFastaExportJob
CFastaExportPage
CFastaExportParams
CFastaFileSet
CFASTAFormatLoadManagerCFASTAFormatLoadManager
CFASTAFormatParamsPanelCFASTAFormatParamsPanel
CFastaIdsResolverDefault implementation of a Seq-id resolver, which knows about FASTA-formatted sequence identifiers
CFastaIOWrapper
CFastaLoadParams
CFastaMapper
CFastaObjectLoaderCFastaObjectLoader
CFastaOstreamFASTA-format output; see also ReadFasta in <objtools/readers/fasta.hpp>
CFastaProcess
CFastaReaderBase class for reading FASTA sequences
CFastaReaderExModification of the CFastaReader class that allows for reading a single sequence as a degenarate multiple sequence alignment
CFastaRetrieveJob
CFastaRetrieveLocJob
CFastaSeqBlockItem
CFastaSeqHdrItem
CFastaTextDisplay
CFastaTextDS
CFastaTitleItem
CFastBuffer< KEmbeddedSize, TType >
CFastIScore
CFastLocalTimeCFastLocalTime --
CFastMutexCFastMutex --
CFastqFileReader
CFastRWLockCFastRWLock --
CFatalRequest
CFatalRequest_ForServer
CFeat_CICFeat_CI --
CFeat_idCFeat_id --
CFeat_id_BaseFeature identifiers ********************************
CFeat_qual_choice
CFeat_qual_choice_BaseCFeat_qual_choice_Base --
CFeat_qual_legal_setCFeat_qual_legal_set --
CFeat_qual_legal_set_BaseCFeat_qual_legal_set_Base --
CFeat_qual_legal_valCFeat_qual_legal_val --
CFeat_qual_legal_val_BaseCFeat_qual_legal_val_Base --
CFeat_qual_legal_val_choiceCFeat_qual_legal_val_choice --
CFeat_qual_legal_val_choice_BaseCFeat_qual_legal_val_choice_Base --
CFeatComparatorByLabel
CFeatCompare_ResultAppJobs for background loading and preparation
CFeatCompareJobAlignment-based data source
CFeatCompareJob_Align
CFeatCompareJob_LocationAnnotation Comparison by location alone This is done by checking a few constraints
CFeatConfigShow
CFeatConfigValues< V >::CFeatConfigValue
CFeatConfigValues< V >Template for configured values, indexed by feature type and subtype where values can inherit from master feature types
CFeatDefCFeatDef --
CFeatDef_BaseCFeatDef_Base --
CFeatDefGroupSetCFeatDefGroupSet --
CFeatDefGroupSet_BaseCFeatDefGroupSet_Base --
CFeatDefSetCFeatDefSet --
CFeatDefSet_BaseCollections of defintions
CFeatDispGroupCFeatDispGroup --
CFeatDispGroup_BaseCFeatDispGroup_Base --
CFeatDispGroupSetCFeatDispGroupSet --
CFeatDispGroupSet_BaseCFeatDispGroupSet_Base --
CFeatFilterQueryExceptionQuery parser exceptions class CFeatFilterQueryException
CFeatFindContext
CFeatGlyphClass for storing a set of nested features
CFeatHeaderItem
CFeatHistogramDSCFeatHistogramDS
CFeatIdRemapper
CFeatTree::CFeatInfo
CFeatListCConfigurableItems - a static list of items that can be configured
CFeatListItemCFeatListItem - basic configuration data for one "feature" type
CFeatMap
CFeatTableDSCFeatTableDS Data source for Feature Table widget
CFeatTableEdit
CFeatTableUpdate
CFeatTableViewCFeatTableView
CFeatTableViewFactoryCFeatTableViewFactory
CFeatTableWidgetCFeatTableWidget
CFeatTreeCFeatTree
CFeatTreeIndex
CFeatTreeSampleApp
CFeature_evidenceCFeature_evidence --
CFeature_evidence_BaseCFeature_evidence_Base --
CFeature_field
CFeature_field_BaseCFeature_field_Base --
CFeature_field_legalCFeature_field_legal --
CFeature_field_legal_BaseCFeature_field_legal_Base --
CFeature_field_pairCFeature_field_pair --
CFeature_field_pair_BaseCFeature_field_pair_Base --
CFeature_table_reader
CFeature_table_reader_imp
CFeatureCheckDialog
CFeatureCheckPanel
CFeatureCreateDialog
CFeatureDescrCFeatureDescr --
CFeatureDescr_BaseCFeatureDescr_Base --
CFeatureDictSetCFeatureDictSet --
CFeatureDictSet_BaseCFeatureDictSet_Base --
CFeatureEditEdits for one or more nodes
CFeatureFieldNamePanel
CFeatureFilterClass CFeatureFilter
CFeatureFilterDlg
CFeatureGatherer
CFeatureGenePanel
CFeatureGenerator
CFeatureGraphCFeatureGraph
CFeatureGraphPropertiesCFeatureGraphProperties
CFeatureItem
CFeatureItemBase
CFeatureItemGff
CFeatureLoadingJobCFeatureLoadingJob
CFeatureLoadingJobResultCFeatureLoadingJobResult
CFeatureMovableButton
CFeatureMovableButtonAa
CFeatureMovableButtonNa
CFeaturePanel
CFeaturePanelDSCFeaturePanelDS
CFeaturePanelDSTypeCFeaturePanelDSType
CFeatureParamsCFeatureParams: the data structure holding feature rendering parameters
CFeatureRetrievalJobAlignment-based data source
CFeatureRetrievalResultAppJobs for background loading and preparation
CFeatureSearchForm
CFeatureSearchJobCFeatureSearchJob
CFeatureSearchQueryCFeatureSearchTool
CFeatureSearchToolCFeatureSearchTool
CFeatureSeqTableColumnBase
CFeatureSeqTableColumnBaseFactory
CFeaturesGroup
CFeatureSubtypeSelector
CFeatureTableCommandConverter
CFeatureTableReader
CFeatureTrackCFeatureTrack --
CFeatureTrackFactoryCFeatureTrackFactory
CFeatureTypePanel
CFeedbackTextArrayPrinter
CFetchGBProjectApp
CFetchURL
CFFileCFFile --
CFFile_BaseCFFile_Base --
CFieldCField --
CQuery::CFieldClass representing value in result set or output parameter of stored procedure
CField_BaseCField_Base --
CField_constraint
CField_constraint_BaseCField_constraint_Base --
CField_editCField_edit --
CField_edit_BaseCField_edit_Base --
CField_pair_typeCField_pair_type --
CField_pair_type_BaseCField_pair_type_Base --
CField_rule
CField_rule_BaseCField_rule_Base --
CField_setCField_set --
CField_set_BaseCField_set_Base --
CField_type
CField_type_BaseCField_type_Base --
CFieldChoicePanel
CFieldConstraintPanel
CFieldDiff
CFieldHandler
CFieldHandlerFactory
CFieldHandlerNamePanel
CFieldListCFieldList --
CFieldList_BaseCFieldList_Base --
CFieldNamePanel
CFieldNamePanelParent
CFileCFile --
pythonpp::CFile
CFileAPIGlobal settings related to the file API
CFileAssociationCFileAssociation --
CFileAssociation_BaseCFileAssociation_Base --
CFileAutoLoaderCFileAutoLoader
CFileByteSource
CFileByteSourceReader
CFileCode
CFileConfigurationCFileConfiguration --
CFileConfiguration_BaseCFileConfiguration_Base --
CFileDataProvider
CFileDBEngine
CFileDeleteAtExitCFileDeleteAtExit --
CFileDeleteListCFileDeleteList --
CFileLoadManager::CFileDescriptor
CFileDiagHandlerCFileDiagHandler --
CFileErrnoException
CFileExceptionCFileException --
CFileExtensionsClass CFileExtensions Helper class to provide info on particular (biological content) file types To be used in File dialogs
CFileHandleDiagHandlerCFileHandleDiagHandler --
CFileIdComment
CFileIDField
CFileIOClass for support low level input/output for files
CFileIO_BaseBase class for CFileIO, CFileReader, CFileWriter, CFileReaderWriter
CFileLoadDescriptor
CFileLoader
CFileLoadManagerCFileLoadManager CFileLoadManager - a Loader Manager implementing "File" option in "Open" dialog
CFileLoadMRUList
CFileLoadOptionPanel
CFileLoadPanel
CFileLoadPanelClientFactory< T >
CFileLoadWizard
CFileLockFile locking
CFileModules
CFileNameCFileName --
CFileName_BaseCFileName_Base --
CFilenameSelectorCFilenameSelector find a Project by its filename
CFileObsoleteFind and remove old files
CFileLoadWizard::CFilePage
CFileLoadManager::CFilePage
CFileReader
CFileReaderWriter
CFileReaderWriter_BaseFile based IReader/IWriter/IReaderWriter with low level IO for speed
CFilesCFiles --
CFiles_BaseCFiles_Base --
CFileSet
CFileSourceCollector
CFileUploadApplication
CFileUtilCFileUtil -- Utility functions
CFileWriter
CFillTypes
CFilterCFilter --
CFilter2
CFilter_BaseCFilter_Base --
CFilterDefault< T >
CFilterDialog
CFilteringArgsArgument class for collecting filtering options
CFilteringMementoMemento class to save, null out, and restore the filtering options of the CBlastOptionsMemento object passed to its constructor This prevents side effects (like filtering the query sequence) to occur during calculation of the effective search space
CFilterNull< T >
CFilterRegEx
CFilterSet
CFilterSet2
CFilterT< T >
CConcurrentMap< Key, Value, Comparator, Allocator, CntChildsInNode, MaxTreeHeight, DeletionDelay, DelStoreCapacity >::CFinalNodeDeleter
CFindFileNamesFunc< TNames >Functor for generic FindFiles, adds file name to the specified container
CFindGapIntronRow
CFindITSParser
CFindLocusTraverser
CFindOverlapJobCFindOverlapJob
CFindOverlapPanel
CFindOverlapParams
CFindOverlapToolCFindOverlapTool
CFindPattern
CFindRSitesThis class contains the static member functions Find, which find restriction sites in a sequence
CBioTree< TBioNode >::CFindUidFuncFind node by UID functor
IWMClient::CFingerprintCFingerprint identifies an instance of IWMClient and is used for labeling layout positions
CFIntornData
CFIntron
CFIntronDon
CFirstCharsCFirstChars --
CFirstChars_BaseCFirstChars_Base --
CFirstExon
CFix_author_capsCFix_author_caps --
CFix_author_caps_BaseCFix_author_caps_Base --
CFix_caps_actionCFix_caps_action --
CFix_caps_action_BaseCFix_caps_action_Base --
CFix_format_actionCFix_format_action --
CFix_format_action_BaseCFix_format_action_Base --
CFix_pub_caps_actionCFix_pub_caps_action --
CFix_pub_caps_action_BaseCFix_pub_caps_action_Base --
CFix_sets_actionCFix_sets_action --
CFix_sets_action_BaseCFix_sets_action_Base --
CFixAffilCap
CFixAllCap
CFixAuthorCap
CFixAuthorInitials
CFixCountryCap
CFixedBlob_ids
CFixedSeq_ids
CTableImportWizard::CFixedWidthPage
CFixGenericListCtrl
CFixOrgModInst
CFixSpecificHostDlg
CFixTitleCap
CFixUSA
CFlatAnticodonQVal
CFlatBondQVal
CFlatBoolQVal
CFlatCodeBreakQVal
CFlatCodonQVal
CFlatException
CFlatExperimentQVal
CFlatFeature
CFlatFeatureRetrieveJob
CFlatFileConfig
CFlatFileContext
CFlatFileDemoDlg
CFlatFileExporter
CFlatFileExporterFactory
CFlatFileExportJobCFlatFileExportJob
CFlatFileExportPage
CFlatFileExportParams
CFlatFileFactoryBuilder
CFlatFileFeatureCollapsed
CFlatFileGenerator
CFlatFileHeader
CFlatFileLocusItem
CFlatfileProcess
CFlatFileRetrieveJob
CFlatFileSectionHeader
CFlatFileSeqBlockCollapsed
CFlatFileSeqBlockIterator
CFlatFileSeqIterator
CFlatfileTextFind
CFlatFileTextItem
CFlatFileViewContext
CFlatGapLoc
CFlatGatherer
CFlatGeneQVal
CFlatGeneSynonymsQVal
CFlatGoQVal
CFlatIllegalQVal
CFlatInferenceQVal
CFlatIntQVal
CFlatItem
CFlatItemFormatter
CFlatItemOStream
CFlatLabelQVal
CFlatModelEvQVal
CFlatMolTypeQVal
CFlatNomenclatureQVal
CFlatNumberQVal
CFlatOrganelleQVal
CFlatOrgModQVal
CFlatProductNamesQVal
CFlatPubSetQVal
CFlatSeqIdQVal
CFlatSeqLoc
CFlatSeqLocQVal
CFlatSiteQVal
CFlatStringListQVal
CFlatStringQVal
CFlatSubSourcePrimer
CFlatSubSourceQVal
CFlatTrnaCodonsQVal
CFlatXrefQVal
CFlexibleDatePanel
pythonpp::CFloat
CFloatingFrame
pythonpp::CFloatingPointError
CFloatTextValidator
CLog::CFlusher
CFolderCFolder --
CFolder_BaseNcbi: removed BaseApplicationManifest
CFolderEditDlg
CFolderInfo
CFolderInfo_BaseCFolderInfo_Base --
CFolderNameValidator< TFolder >
CFontConfigFile Description:
CFontDemoPanel
CFontWindow
CForceJobClass used to run deformation on separate thread
CForeignContaminationScreenReportReader
CFormArgDesc
CFileLoadOptionPanel::CFormatDescriptor
CFormatGuessClass implements different ad-hoc unreliable file format identifications
CFormatGuessApp
CFormatGuessExWraps CFormatGuess, and if CFormatGuess's result is Unknown, it tries every file reader until one works
CFormatGuess::CFormatHintsHints for guessing formats
CFormatItemOStream
CFormatQual
CFormatReadHook
CFormatRpsDbParameters
CFormatRpsDbParameters_BaseThis structure is used to create the RPS-BLAST database auxiliary file (*.aux) and it contains parameters set at creation time of the PSSM
CFormattedQualPanel
CVecscreenRun::CFormatterThe Vecscreen formatter
CFormattingArgsArgument class to collect formatting options, use this to create a CBlastFormat object
CFormDataEncoder
CFormDataProvider_BaseInterface for custom form data providers
CFormicAcid
CFragment_massesCFragment_masses --
CFragment_masses_BaseQuantitation channel
CFrAlignRow
CFrameFinderFunction object to assist in finding all CSeqLocInfo objects which corresponds to a given frame
CFrameShiftArgsArgument class to collect the frame shift penalty for out-of-frame searches
CFrameworkDemoAppDerive our application class from CwxNCBIApp and use it together with standard CNCBIwxApplication
CFrameworkDemoGUICFrameworkDemoFrame
CFrameworkDemoGUIDropTargetCFrameworkDemoGUIDropTarget
CFrameworkDemoToolBarFactoryCFrameworkDemoToolBarFactory
CFStreamByteSource
CFtableFormatter
CFtableGatherer
CFtglFontManager
CFullTreeConstIterator
CFuncPtr
CFuncPtr1< RetType, Arg1 >
CFuncPtrTmpl< T >
CFuncPtrTmpl1< T, RetType, Arg1 >
pythonpp::CFunction
CFutexWrapper around Linux's futex
CConnTest::CFWConnPointAuxiliary class to hold FWDaemon CP(connection point) information and its current status
CFxnSetCFxnSet --
CFxnSet_BaseFunctional relationship of SNP (and possibly alleles) to genes at contig location as defined in organism-specific bxxx_SNPContigLocusId_xxx tables
CGapAnalysisGive this gaps, or handles containing gaps and then you can get statistics on those gaps
CGapInfo< THit >
CGapItem
CGappedArgsArgument class for collecting gapped options
CLocMapper_Default::CGappedRange
CGapsEditor
CGapStatsApplication
CGapTriggerArgsArgument class to retrieve the gap trigger option
CGather_Iter
CGB_block
CGB_block_BaseGenBank specific descriptions
CGB_DataLoaderCF
CGb_qual.hpp User-defined methods of the data storage class
CGb_qual_BaseCGb_qual_Base --
CGB_Writer_PluginManager_DllResolver
CGBAltSeqDataCGBAltSeqData --
CGBAltSeqData_BaseCGBAltSeqData_Base --
CGBAltSeqItemCGBAltSeqItem --
CGBAltSeqItem_BaseCGBAltSeqItem_Base --
CGBankLoadingJob
CGBAuthorCGBAuthor --
CGBAuthor_BaseCGBAuthor_Base --
CGBBlockField
CGBCommentCGBComment --
CGBComment_BaseCGBComment_Base --
CGBCommentParagraphCGBCommentParagraph --
CGBCommentParagraph_BaseCGBCommentParagraph_Base --
CGBDataLoader
CGBDocumentCGBDocument
CGBDocumentLabelHandler
CGBenchFeedbackAttachment
CGBenchFeedbackAttachment_BaseCGBenchFeedbackAttachment_Base --
CGBenchFeedbackRequest
CGBenchFeedbackRequest_BaseCGBenchFeedbackRequest_Base --
CGBenchInitReply
CGBenchInitReply_BaseWe reply to 'init' with the current version so the client can make a decision about whether to request an update We also send some configuration information, including:
CGBenchInitRequest
CGBenchInitRequest_BaseAt initialization, we only ask for the version of Genome Workbench being run
CGBenchPipeCGBenchPipe
CGBenchService
CGBenchService_BaseCGBenchService_Base --
CGBenchServiceReply
CGBenchServiceReply_BaseMatched replies for our request
CGBenchServiceRequest
CGBenchServiceRequest_BaseA request is a choice of a few different entities
CGBenchToolResults
CGBenchVersionInfo
CGBenchVersionInfo_BaseCGBenchVersionInfo_Base --
CGBenchVersionReply
CGBenchVersionReply_BaseCGBenchVersionReply_Base --
CGBenchVersionRequest
CGBenchVersionRequest_BaseCGBenchVersionRequest_Base --
CGbEntryHandlerHandler for GenBank release files
CGBFeatureCGBFeature --
CGBFeature_BaseCGBFeature_Base --
CGBFeatureSetCGBFeatureSet --
CGBFeatureSet_BaseCGBFeatureSet_Base --
CGBInfoManager
CGBIntervalCGBInterval --
CGBInterval_BaseCGBInterval_Base --
CGBKeywordCGBKeyword --
CGBKeyword_BaseCGBKeyword_Base --
CGBL_DataCGBL_Data --
CGBL_Data_BaseCGBL_Data_Base --
CGBL_GeneCGBL_Gene --
CGBL_Gene_BaseSingle gene record
CGBL_ReplyCGBL_Reply --
CGBL_Reply_BaseCGBL_Reply_Base --
CGBLoaderParams
CGBLoadWizard
CGBObjectLoaderCGBObjectLoader
CGBProject
CGBProject_BaseVersion 1 (unversioned) project This project description is frozen as of 12/1/2005 and should not be modified
CGBProject_ver2
CGBProject_ver2_BaseVersion 2 project With version two we start a new paradigm The first item in the project *MUST* be a non-optional version stamp, composed as an integer
CGBProject_ver2LabelHandler
CGBProjectHandle
CGBProjectHandle_BaseA project handle is an abstraction that binds all possible versions This is stored in a workspace; the serialized component
CGBProjectHelper
CGBProjectLabelHandler
CGBProjectTool
CGbQualColumn
CGBQualDirectionPanel
CGBQualifierCGBQualifier --
CGBQualifier_BaseCGBQualifier_Base --
CGBQualPanel
CGBQualStringListValidator
CGBQualTextPanel
CGBReaderCacheManager
CGBReaderRequestResult
CGBReferenceCGBReference --
CGBReference_BaseCGBReference_Base --
CGBReleaseFileCGBReleaseFile is a utility class to ease the processing of Genbank release files one Seq-entry at a time
CGBReleaseFileImpl
CGBRequestStatistics
CGbScopeLoader
CGBSecondary_accnCGBSecondary_accn --
CGBSecondary_accn_BaseCGBSecondary_accn_Base --
CGBSeqCGBSeq --
CGBSeq_BaseCGBSeq_Base --
CGBSeqFormatter
CGBSeqidCGBSeqid --
CGBSeqid_BaseCGBSeqid_Base --
CGBSetCGBSet --
CGBSet_BaseGBSeq represents the elements in a GenBank style report of a sequence with some small additions to structure and support for protein (GenPept) versions of GenBank format as seen in Entrez
CGBStrucCommentCGBStrucComment --
CGBStrucComment_BaseCGBStrucComment_Base --
CGBStrucCommentItemCGBStrucCommentItem --
CGBStrucCommentItem_BaseCGBStrucCommentItem_Base --
CGBWorkspaceCGBWorkspace
CGBWorkspace_BaseA workspace is a hierarchically organized set of projects Projects represent the leaves in the tree
CGBWorkspaceLabelHandler
CGBXrefCGBXref --
CGBXref_BaseCGBXref_Base --
CGC_AssembliesCGC_Assemblies --
CGC_Assemblies_BaseCGC_Assemblies_Base --
CGC_Assembly
CGC_Assembly_BaseA GC-Assembly is either a single assembly unit or it is a set of assemblies
CGC_Assembly_ParserCGC_Assembly_Parser --
CGC_AssemblyDescCGC_AssemblyDesc --
CGC_AssemblyDesc_BaseCGC_AssemblyDesc_Base --
CGC_AssemblySet
CGC_AssemblySet_BaseCGC_AssemblySet_Base --
CGC_AssemblyUnit
CGC_AssemblyUnit_BaseCGC_AssemblyUnit_Base --
CGC_DbTagAliasCGC_DbTagAlias --
CGC_DbTagAlias_Base
CGC_External_SeqidCGC_External_Seqid --
CGC_External_Seqid_BaseCGC_External_Seqid_Base --
CGC_GenomeCGC_Genome --
CGC_Genome_BaseCGC_Genome_Base --
CGC_GenomicPartCGC_GenomicPart --
CGC_GenomicPart_BaseCGC_GenomicPart_Base --
CGC_ProjectCGC_Project --
CGC_Project_BaseCGC_Project_Base --
CGC_QueryCGC_Query --
CGC_Query_BaseA GC-Assemblies is a mere set of assemblies
CGC_Replicon
CGC_Replicon_BaseCGC_Replicon_Base --
CGC_Scaf_statsCGC_Scaf_stats --
CGC_Scaf_stats_BaseCGC_Scaf_stats_Base --
CGC_SeqIdAlias
CGC_SeqIdAlias_BaseSeq-id-alias a sequence has multiple seq-ids - refseq, genbank, local and each one has both gi and accession.version We cannot provide them as simply a list of seq-ids since it will be unclear which gi goes with which accession, therefore we group the related ones as alias pair
CGC_Sequence
CGC_Sequence_BaseGC-Sequence: Used for scaffolds, scaffold-sets and components in Gencoll terminology
CGC_SequenceStatsCGC_SequenceStats --
CGC_SequenceStats_BaseStats of complex objects Used at assembly and chromosome levels
CGC_TaggedSequencesCGC_TaggedSequences --
CGC_TaggedSequences_BaseGC-TaggedSequences: set of sequences in a specific role
CGC_TypedSeqIdCGC_TypedSeqId --
CGC_TypedSeqId_BaseCGC_TypedSeqId_Base --
CGCAssemblyLoadManagerCGCAssemblyLoadManager - Load Manager that loads genome collection assembly
CGCAsssemblyHandlerCGCAsssemblyHandler label handler
CGCClient_AssembliesForSequencesCGCClient_AssembliesForSequences --
CGCClient_AssembliesForSequences_BaseCGCClient_AssembliesForSequences_Base --
CGCClient_AssemblyInfoCGCClient_AssemblyInfo --
CGCClient_AssemblyInfo_BaseCGCClient_AssemblyInfo_Base --
CGCClient_AssemblySequenceInfoCGCClient_AssemblySequenceInfo --
CGCClient_AssemblySequenceInfo_BaseCGCClient_AssemblySequenceInfo_Base --
CGCClient_ErrorCGCClient_Error --
CGCClient_Error_BaseCGCClient_Error_Base --
CGCClient_FindBestAssemblyRequestCGCClient_FindBestAssemblyRequest --
CGCClient_FindBestAssemblyRequest_BaseCGCClient_FindBestAssemblyRequest_Base --
CGCClient_GetAssemblyRequestCGCClient_GetAssemblyRequest --
CGCClient_GetAssemblyRequest_BaseCGCClient_GetAssemblyRequest_Base --
CGCClient_ValidateChrTypeLocRequestCGCClient_ValidateChrTypeLocRequest --
CGCClient_ValidateChrTypeLocRequest_BaseCGCClient_ValidateChrTypeLocRequest_Base --
CGCClient_ValidateChrTypeLocResponseCGCClient_ValidateChrTypeLocResponse --
CGCClient_ValidateChrTypeLocResponse_BaseCGCClient_ValidateChrTypeLocResponse_Base --
CGCClientRequestCGCClientRequest --
CGCClientRequest_BaseCGCClientRequest_Base --
CGCClientResponseCGCClientResponse --
CGCClientResponse_BaseCGCClientResponse_Base --
CGen_code_table
CGen_code_table_imp
CFlatFileConfig::CGenbankBlockCallback
CGenBankDSEvtHandlerCGenBankDSEvtHandler - wxEvtHandler-derived adapter for GenBank data source
CGenbankFormatter
CGenbankGatherer
CGenbankKeywordField
CGenBankLoadOptionPanelCGenBankLoadOptionPanel
CGenBankUIDataSourceCGenBankUIDataSource
CGenBankUIDataSourceTypeCGenBankUIDataSourceType
CGenBankUILoadManagerCGenBankUILoadManager
CGencollIdMapper
CGene
CGeneFileWriter::CGene2AccnProcessorGene->Accession line processor
CGeneFileWriter::CGene2PMProcessorGene->PubMed line processor
CGene_commentary
CGene_commentary_BaseCGene_commentary_Base --
CGene_nomenclatureCGene_nomenclature --
CGene_nomenclature_BaseCGene_nomenclature_Base --
CGene_ref
CGene_ref_BaseGene ***********************************************
CGene_sourceCGene_source --
CGene_source_BaseCGene_source_Base --
CGene_trackCGene_track --
CGene_track_BaseCGene_track_Base --
CGene_xref_typeCGene_xref_type --
CGene_xref_type_BaseCGene_xref_type_Base --
CGeneContentEvtHandler
CGeneFileUtilsCGeneFileUtils
CGeneFileWriterCGeneFileWriter
CGeneFinder
CGeneGroupCGeneGroup is a subclass of CLayoutGroup contains gene, RNA, cds, and Exon features
CGeneInfoCGeneInfo
CGeneInfoExceptionCGeneInfoException
CGeneInfoFileReaderCGeneInfoFileReader
CGeneFileWriter::CGeneInfoProcessorGene Info line processor
NSnpBins::CGeneMapStorage for gene maps as seen in strings in SBinEntry::genes_reported and SBinEntry::genes_mapped
CGeneModel
CGeneModelConfig
CGeneModelDemoApp
CGeneModelFactoryCGeneModelFactory
CGeneModelFeatJobCGeneModelFeatJob: a job class for loading annotated main features, including genes, RNAs, CDSs and exons from a given sequence and a given visible range
CGeneModelTrackCGeneModelTrack --
CGeneOverlapProcess
CGenePanel
CGeneralExc
CGeneralException
CGeneralIDField
CGeneralIDPanel
CGeneralParseException
CGeneralScoreMatrixScore matrix that can take any value
CGeneralScoreMatrixExceptionExceptions for CGeneralScoreMatrix
CGenerateCodeCallback
CGenerateIncludesCallback
CGenerateStoredArgInitializerCallback
CGenerateStoredArgVariablesCallback
pythonpp::CGenerator
CGeneRefColumn
CGenericPropsPanel
CGenericReportDlg
CGenericSearchArgsArgument class for general search BLAST algorithm options: evalue, gap penalties, query filter string, ungapped x-drop, initial and final gapped x-drop, word size, percent identity, and effective search space
CGenericSqlString< TChar >Convenience extension of basic_string, supporting implicit conversion to const TChar* in most situations (but alas not within variadic argument lists, as for printf and the like)
CGenericStructuredCommentColumn
CGeneFinder::CGeneSearchPlugin
CGeneSelector
CGenetic_code
CGenetic_code_BaseEach code is 64 cells long, in the order where T=0,C=1,A=2,G=3, TTT=0, TTC=1, TCA=4, etc NOTE: this order does NOT correspond to a Seq-data encoding
CGenetic_code_table
CGenetic_code_table_BaseTable of genetic codes
CGeneticCodeArgsArgument class to collect the genetic code for all queries/subjects
CGenomeAnnotComment
CGenomeAssemblyComment
CGenomeItem
CGenomeProjectField
CGenomeProjectItem
CGenomeQual
CGenomeTableCommandConverter
CGenomicCollectionsService
CGenomicCollectionsService_BaseCGenomicCollectionsService_Base --
CGet1TypeInfoSource
CGet2TypeInfoSource
CGetBioseqHandle_localFunctor to get seq_id_handle (used for async execution)
CGetFeature
CGetJobCmdExecutor
CGetJobNotificationThread
CGetLoadProcessor
CGetNetTaxIds
CGetOpt
CGetOverlappingFeaturesPlugin
CGetPasswordFromConsoleExceptionException class for g_GetPasswordFromConsole
CGetRelSeqsDataSource
CGetRelSeqsJob
CGetRelSeqsJobResult
CGetSeqLocFromStringHelper
CGetSeqLocFromStringHelper_ReadLocFromText
CGetStatisticsProcessor
CGetTaxIdLabelsFunctor class for background labels preparation
CGetTaxonLabels_localFunctor to retrieve taxonomy labels (used for async execution)
CGetTooltip_localFunctor to retrieve tooltip (used for async execution)
CGetVersionProcessor
CGff2Reader
CGff2Record
CGff2WriterCWriterBase implementation that formats Genbank objects as plain GFF files
CGFF3_CIGAR_Formatter
CGff3FlybaseRecord
CGff3FlybaseWriter
CGff3Reader
CGff3ReadRecord
CGff3SofaTypes
CGff3SourceRecord
CGff3Writer
CGff3WriteRecordFeature
CGffAlignmentRecord
CGffAlignRecord
CGffBaseRecord
CGffDenseSegRecord
CGffExporter
CGffExporterFactory
CGffExportJobCGffExportJob
CGffExportPage
CGffExportParams
CGffFeatureContext
CGffFeatureRecord
CGFFGatherer
CGffLoadManagerCGffLoadManager
CGffLoadParams
CGffObjectLoaderCGffObjectLoader
CGffParamsPanel
CGFFReader
CGffRecord
CGffSourceRecord
CGffSplicedSegRecord
CGffWriteRecord
CGffWriteRecordFeature
CGi2TaxIdApp
CGiCacheClass CGiCache provides a simple, thread-safe interface for storing the older or outdated versions of sequence records viewed in GBench
CGICacheReader
CGICacheReaderCFClass factory for ID1 reader
CGiimport_idCGiimport_id --
CGiimport_id_BaseCGiimport_id_Base --
CGl3dDemoPanel
CGl3dWindow
CGL_matrixCGL_matrix --
CGL_matrix_BaseCGL_matrix_Base --
CGlArcBall
CGlAttrGuardCGlAttrGuard - guard class for restoring OpenGL attributes
CGlBackground
CGlBitmapFont
CGlBuffer< T >CGlBuffer Concrete buffers (to store vertices, vertex attributes, or indices to vertex buffers) are derived from this class
CGlBuffer11< T >CGlBuffer11 Implement abstract buffer interface using simple STL array
CGlBuffer20< T >CGlBuffer20 Implement the abstract buffer interface based on OpenGL vertex buffer objects
CGlCamera
CGLCanvasCGLCanvas
CGlCgiImageApplication
CGlContainer
CGLContextCache
CGlCurve< Curve >Class ICurve defines a basic interface for all curves
CGLDemoDlg
CGlDisplayList
CGlDisplayListCompile
CGlDrawScale
CGlEvent
CGlFeedbackFont
CGLFrameBufferCGLFrameBuffer
CGlGeometry
CGLGlewContextCGLGlewContext - Store instance of glew context in a singleton that is available to all opengl libs, not just ones dependent on wx
CGlimmerReader
CGlInfoDemoPanel
CGlInfoWindow
CGlLight
CGlMaterial
CGlModel2DCGlModel2D Base class for a model set up for rendering purposes
CGlobal_idCGlobal_id --
CGlobal_id_BaseCdd's should not exist without a unique accession, but alternative id's may be present as well
CGlobalAuthorReplaceDlg
CGlObjectCGlObject Base class for OpenGl objects like buffers and models
CGlOsContext
CGlPaneClass CGlPane
CGlPaneGuard
CGlPaneWidgetChildDemo
CGlPaneWidgetDemoPanel
CGlPoint< T >
CGlPreviewSetupWidget
CGlRect< T >CGlRect reprsents rectangle in the coordinate system with origin located in the left bottom corner
CGlRenderCGlRender
CGlRender11CGlRender11
CGlRender20CGlRender20
CGlRenderBuffer< T >CGlRenderBuffer This is a thin wrapper for buffer objects derived from CGlBuffer
CGlRenderDebugCGlRenderDebug
CGlRenderNodeCGlRenderNode A unit of renderable geometry and the associated state information needed for rendering
CGlRenderPdfCGlRenderPdf
CGlResMgr
CGlStateCGlState Class to encapsulate Rendering state so that a set of user-selected GL state options can be saved and then enabled as needed, particularly before the rendering of some object
CGlTestApplication
CGLTestWMClientCTextWMClient
CGlTexture
CGlTextureFont
CGlTextureManager
CGlTube< Curve >Class ICurve defines a basic interface for all curves
CGluCGlu-C, Cterm of E
CGluCAspNGlu-C and Asp-N
CGluCDEEMSEnzymes_gluc_de Glu-C that cuts at D and E
CGlUtils
CGlVboGeomCGlVboGeom This is an abstract base class to hold 1 or more buffers needed to render application geometry
CGlVboGeom11CGlVboGeom11 This class holds one or more OpenGL vertex buffers implemented as c++ arrays
CGlVboGeom20CGlVboGeom20 This class holds one or more OpenGL vertex buuffer objects and implements the CGlVboGeom interface
CGlVboNodeCGlVboNode A rendering node that holds a vertex buffer object
CGlViewport
CGlWidget
CGlWidgetBaseClass CGlWidgetBase
CGlWidgetDemoCGlWidgetDemo
CGlWidgetPaneCGlWidgetPane represent a window component residing in CGlWidgetBase client area
CGlyph
CGlyphContainerFile Description:
CGlyphSearchVisitor
CGlZoomLens
CGnomon_paramCGnomon_param --
CGnomon_param_BaseCGnomon_param_Base --
CGnomon_paramsCGnomon_params --
CGnomon_params_BaseCGnomon_params_Base --
CGnomonAnnotator
CGnomonAnnotator_Base
CGnomonAnnotatorArgUtil
CGnomonEngine
CGnomonException
CGoQualLessThan
CGoTermSortStruct
CGPipeAlignmentScorer
CGradientColorPanel
CGradientPanel
CGraph_CICGraph_CI --
CGraphBaseCGraphBase
CGraphContainerCGraphContainer CGraphContainer a composite IRenderable that manages several child IRenderable graphs
CGraphContainerEvtHandler
CGraphDotMarkerClass CGraphDotMarker
CGraphFindContext
CGraphGlyphCGraphGlyph -- a speical histograms glyph converted from a seq-graph
CGraphNotificationCGraphEvent
CGraphPanelClass CGraphPanel CGraphPanel class is an assembly of a number of "graph" library objects
CGraphRangesHelper class for mapping graphs
CGraphTrackCGraphTrack --
CGraphTrackFactoryCGraphTrackFactory
CGRCStatusSorterCGRCStatusSorter is a feature sorter used to sort GRC issue features based on resolving status stored in seq-feat::qual
CGridCGrid
CGridCgiApplicationGrid Cgi Application
CGridCgiContextGrid CGI Context Context in which a request is processed
CGridCgiSampleApplication
CGridCleanupThread
CGridClientGrid Client (the submitter)
CGridClientAppGrid Client Application
CGridClientExceptionGrid Client exception
CGridClientSampleApp
CGridCommandLineInterfaceApp
CGridControlThread
CGridGlobals
CGridHyperlinks
CGridJobBatchSubmitterGrid Job Batch Submitter
CGridRPCBaseClient< TConnectTraits, DefaultTimeout >CGridRPCBaseClient<typename TConnectTraits>
CGridRPCBaseClientException
CGridTableSeqIds
CGridWidget
CGridWidgetEvent
CGridWorkerAppMain Worker Node application
CGridWorkerNodeGrid Worker Node
CGridWorkerNodeApp_ListenerAn adapter class for IGridWorkerNodeApp_Listener
CGridWorkerNodeException
CGroupAlignmentsJobCGroupAlignmentsJob
CGroupAlignmentsParamsPanelCGroupAlignmentsParamsPanel
CGroupAlignmentsToolManagerCGroupAlignmentsToolManager
CGroupCheckboxes
CGroupMapWidget::CGroupItemCGroupItem ////////////////////////////////////////////////////////////
CGroupMapWidgetCGroupMapWidget
CGroupRadioButtons
CGroupTableModel
CGsdbComment
CGtfExporter
CGtfExporterFactory
CGtfExportJobCGtfExportJob
CGtfExportPage
CGtfExportParams
CGtfReader
CGtfReadRecord
CGtfRecord
CGtfWriter
CGuard< Resource, Lock, Unlock, ReportExceptions >
CLDS_CollectSeq_idsReader::CGuard
CLDS2_Seq_id_Hook::CGuard
CGuard_BaseBase class for CGuard<> template
CFlatSeqLoc::CGuardedToAccessionMap
CGuessColumns_local
CGuiConfigExceptionExceptions thrown by CSettings Set and Factory default classes should derive from this
CGuideFile
CGuiDependentPkg
CGuiDependentPkg_BaseCGuiDependentPkg_Base --
CGuideSamFile
CGuideTreeApplication
CGuidGenerator
CGUIEventCGUIEvent provides mapping of FLTK events to Semantic Events
CGuiObjectInfoBioseq
CGuiObjectInfoBioseq_set
CGuiObjectInfoBioTreeContainer
CGuiObjectInfoClone
CGuiObjectInfoDefault
CGuiObjectInfoDistanceMatrix
CGuiObjectInfoEntrez2_docsum
CGuiObjectInfoEntrezgene
CGuiObjectInfoGCAssembly
CGuiObjectInfoImpFeatureImport feature
CGuiObjectInfoPrimer
CGuiObjectInfoRegionFeatureRegion feature
CGuiObjectInfoSeq_align
CGuiObjectInfoSeq_align_set
CGuiObjectInfoSeq_annot
CGuiObjectInfoSeq_entry
CGuiObjectInfoSeq_feat
CGuiObjectInfoSeq_id
CGuiObjectInfoSeq_loc
CGuiObjectInfoSeqFeatureSeq feature
CGuiObjectInfoSiteFeatureSite feature
CGuiObjectInfoValidError
CGuiObjectInfoVariant
CGuiObjectInfoVariation
CGuiPkgDependency
CGuiPkgDependency_BaseCGuiPkgDependency_Base --
CGuiPkgManifest
CGuiPkgManifest_BaseCGuiPkgManifest_Base --
CGuiRegistry
CGuiRegistryUtil
CGuiSeqInfoDefault
CGuiSeqInfoSeq_id
CGUIUserTypeCGUIUserType
CGuiWidgetDlg
CGumbelParamsApplicationApplication for computing Gumbel parameters
CGumbelParamsCalcWrapper for Gumbel parameter calculation
CGumbelParamsCalcVersionKeeps track of Gumbel params calculation library version
CGumbelParamsExceptionException class
CGumbelParamsOptionsInput parameters for Gumbel parameters calculation
CGumbelParamsOptionsFactoryClass used for creation of sets of input parameters
CGumbelParamsRandDiagnosticsOptions that control random values used in internal parts of Gumbel parameter calculation for gapped aligmment
CGumbelParamsResultResult of Gumbel parameters calculation along with diagnostic info
CGvfReader
CGvfReadRecord
CGvfWriter
CGvfWriteRecord
CGwasLoadParams
CGZipChunkHandler
ChainInfo
CHandleRange
CHandleRangeMap
mu::Parser::change_dec_sep< TChar >A facet class used to change decimal and thousands separator
dtl::ChangePrinter< sesElem, stream >Ses element printer class template
CHangScorer
CHapmapJobCHapmapJob
CHapmapTrack
CHapmapTrackFactory
CObjectIStream::CharBlock
CObjectOStream::CharBlock
CHashAtom
CHashCode
CHashGenerator
CHashIterator
CHashParam
CHashPlanes
CHashPopulator
CHttpHeaders::CHeaderNameConverterHelper class allowing to use both strings and enums as header names
CHeapElement
CHeapScope
Check< T >
ncbi::boost_fp_impl::check_is_close_t
ncbi::boost_fp_impl::check_is_small_t
CHelloApp
CHelloBasicCommand
CHelloCommand
CHelloReplyCommand
CHelloResource
CHelloWorldDlg
ChemicalGraph
CHeterogenCHeterogen --
CHeterogen_BaseCofactor, prosthetic group, inhibitor, etc
CHG_AlignmentCHG_Alignment --
CHG_Alignment_BaseCHG_Alignment_Base --
CHG_AlignmentSetCHG_AlignmentSet --
CHG_AlignmentSet_BaseCHG_AlignmentSet_Base --
CHG_CommentaryCHG_Commentary --
CHG_Commentary_BaseCHG_Commentary_Base --
CHG_CommentaryContainerCHG_CommentaryContainer --
CHG_CommentaryContainer_BaseCHG_CommentaryContainer_Base --
CHG_CommentarySetCHG_CommentarySet --
CHG_CommentarySet_BaseCHG_CommentarySet_Base --
CHG_DomainCHG_Domain --
CHG_Domain_BaseCHG_Domain_Base --
CHG_Entry
CHG_Entry_BaseCHG_Entry_Base --
CHG_EntrySetCHG_EntrySet --
CHG_EntrySet_BaseHomoloGeneEntry taxid is the tax id of the group node, which can be the same as the Gene tax id in case of singletons
CHG_Gene
CHG_Gene_BaseCHG_Gene_Base --
CHG_LinkCHG_Link --
CHG_Link_BaseCHG_Link_Base --
CHG_NodeCHG_Node --
CHG_Node_BaseCHG_Node_Base --
CHG_Node_idCHG_Node_id --
CHG_Node_id_BaseCHG_Node_id_Base --
CHG_StatsCHG_Stats --
CHG_Stats_BaseCHG_Stats_Base --
CHGVS_CoordinateCHGVS_Coordinate --
CHGVS_Coordinate_BaseCHGVS_Coordinate_Base --
CHGVS_Coordinate_SetCHGVS_Coordinate_Set --
CHGVS_Coordinate_Set_BaseCHGVS_Coordinate_Set_Base --
variation_ref::CHgvsParser
variation::CHgvsParser
variation_ref::CHgvsParser::CHgvsParserException
variation::CHgvsParser::CHgvsParserException
CHgvsReader
CHiddenSettingCHiddenSetting --
CHiddenSetting_BaseCHiddenSetting_Base --
CHIntronScore
CHistComment
CHistConfigDlg
CHistogramBinningGiven a set of integer data, this will bin the data for use in histograms
CHistogramGlyph
CHistogramGraphCHistogramGraph
CHistParamsFile Description:
CHistParamsManagerCHistParamsManager: class for manage histogram/graph settings for all feature subtype and various graphs
CCddInputData::CHitSingle RPS-BLAST hit
CHitA generalized representation of a pairwise alignment
CHit_BaseCHit_Base --
CHitCluster
CHitClustering
CHitComparator< THit >
CHitCoverageAccumulator< THit >
CHitDescrCHitDescr --
CHitDescr_BaseDescription of entries for this (possibly non-redundant) sequence
CHitElemGlyphCHitElemGlyph is a simple graphical object representing a Hit Element
CHitFilter< THit >
CHitGlyphCHitGlyph is a simple graphical object representing a Hit as a set of corresponding Hit Elements
CHitListAn ordered collection of CHit objects
CHitMatrixDataSourceCHitMatrixDataSource
CHitMatrixDemoAppDerive our application class from CwxNCBIApp and use it together with standard CNCBIwxApplication
CHitMatrixDemoDlg
CHitMatrixDSBuilderCHitMatrixDSBuilder
CHitMatrixGraphCHitMatrixGraph
CHitMatrixPaneClass CHitMatrixPane
CHitMatrixRendererCHitMatrixRenderer - renders Hit Matrix Graph, Rulers, axes, grid, sequence and features graphs
CHitMatrixSeqGraphCHitMatrixSeqGraph
CHitMatrixWidgetClass CHitMatrixWidget
CCddInputData::CHitSegmentRepresents one alignment segment of a RPS-BLAST hit
CHitSeqIdCHitSeqId
CHitSeqRowIdCHitSeqRowId
CHMM_State
CHMMParametersHMM model parameters just create it and pass to a Gnomon engine
CHookBioseq__Seq_id
CHookBioseqContext
CHookData< Hook, Function >
CHookDataBase
CHookDefline
NWinHook::CHookedFunctionClass CHookedFunction
NWinHook::CHookedFunctions
CHookSeq_annot__Seq_annot
CHookSeq_annot__Seq_id
CHookSeq_entry__Copy
CHookSeq_entry__Copy__Seq_annot
CHookSeq_entry__Skip
CHookSeq_entry__Skip__Seq_annot
CHookSeq_entry__Skip__Seq_id
CHookTax_id
CHostEntryPointImpl< TClassFactory >Template implements entry point
CHspCHsp --
CHsp_BaseCHsp_Base --
CHspFilteringArgsArgument class to retrieve options for filtering HSPs (e.g
CHspStreamWriteThread
CHTML_a
CHTML_area
CHTML_basefont
CHTML_br
CHTML_button
CHTML_checkbox
CHTML_color
CHTML_dir
CHTML_dl
CHTML_fieldset
CHTML_file
CHTML_font
CHTML_form
CHTML_hidden
CHTML_hr
CHTML_html
CHTML_image
CHTML_img
CHTML_input
CHTML_input_button
CHTML_label
CHTML_legend
CHTML_map
CHTML_menu
CHTML_meta
CHTML_ol
CHTML_optgroup
CHTML_option
CHTML_password
CHTML_radio
CHTML_reset
CHTML_script
CHTML_select
CHTML_submit
CHTML_table
CHTML_table_Cache
CHTML_tc
CHTML_tc_Cache
CHTML_text
CHTML_textarea
CHTML_tr
CHTML_tr_Cache
CHTML_ul
CHTMLActiveArea
CHtmlAnchorItem
CHTMLBasicPageCHTMLBasicPage --
CHTMLBlockElement
CHTMLComment
CHTMLDualNode
CHTMLElement
CHTMLExceptionCHTMLException --
CHTMLHelper
CHTMLInlineElement
CHTMLListElement
CHTMLNode
CHTMLOpenElement
CHTMLPageCHTMLPage --
CHTMLPageStat
CHTMLPlainText
CHTMLSingleElement
CHTMLSpecialChar
CHTMLTagNode
CHTMLText
CHtmlTooltipFormatterTooltips using html tables with html attibute formatting and generate NCBI URLs are absolute (recommended for GBench)
CHtmlWindowtHandleRich Text helper class that allows mouse click and motion events to grab the control's parent object and move it around
CHTMLWMClientCHTMLWMClient
CHttpCookieCHttpCookie::
CHttpCookie_CICHttpCookie_CI::
CHttpCookieExceptionCHttpCookieException --
CHttpCookies
CHttpFormDataPOST request data
CHttpHeaders
CHttpRequestHTTP request
CHttpResponseHTTP response
CHttpSessionHTTP session class, holding common data for multiple requests
CHttpSessionApp
CHttpSessionExceptionCHttpSessionException --
CHttpResponse::CHttpStreamRef
rapidjson::MemoryPoolAllocator< BaseAllocator >::ChunkHeaderChunk header for perpending to each chunk
CCellHyperlinks::CHyperlink
CHyperlinkGlyph
CICacheCF< TDriver >Utility class for ICache class factories
CIconUrlCIconUrl --
CIconUrl_Base+
CIdCId --
CID1blob_infoCID1blob_info --
CID1blob_info_BaseCID1blob_info_Base --
CID1Client
CID1Client_BaseCID1Client_Base --
CId1FetchApp
CId1Reader
CId1ReaderBase
CId1ReaderCFClass factory for ID1 reader
CID1Seq_histCID1Seq_hist --
CID1Seq_hist_BaseCID1Seq_hist_Base --
CID1SeqEntry_infoCID1SeqEntry_info --
CID1SeqEntry_info_BaseCID1SeqEntry_info_Base --
CID1server_back.hpp User-defined methods of the data storage class
CID1server_back_BaseCID1server_back_Base --
CID1server_debugCID1server_debug --
CID1server_debug_BaseCID1server_debug_Base --
CID1server_maxcomplexCID1server_maxcomplex --
CID1server_maxcomplex_BaseComplexity stuff will be for ID1
CID1server_requestCID1server_request --
CID1server_request_BaseRequests
CID2_Blob_IdCID2_Blob_Id --
CID2_Blob_Id_BaseUtility types
CID2_Blob_Seq_idCID2_Blob_Seq_id --
CID2_Blob_Seq_id_BaseCID2_Blob_Seq_id_Base --
CID2_Blob_Seq_idsCID2_Blob_Seq_ids --
CID2_Blob_Seq_ids_BaseData packed within ID2-Reply-Get-Blob-Seq-ids reply
CID2_ErrorCID2_Error --
CID2_Error_BaseCID2_Error_Base --
CID2_Get_Blob_DetailsCID2_Get_Blob_Details --
CID2_Get_Blob_Details_BaseThe following structure describes what parts of blob are required immediately after ID2-Request-Get-Blob-Info in case blob is split
CID2_ParamCID2_Param --
CID2_Param_BaseCID2_Param_Base --
CID2_ParamsCID2_Params --
CID2_Params_BaseCID2_Params_Base --
CID2_ReplyCID2_Reply --
CID2_Reply_BaseReply types
CID2_Reply_DataCID2_Reply_Data --
CID2_Reply_Data_BaseData packing
CID2_Reply_Get_BlobCID2_Reply_Get_Blob --
CID2_Reply_Get_Blob_BaseReply to ID2-Request-Get-Blob-Info
CID2_Reply_Get_Blob_IdCID2_Reply_Get_Blob_Id --
CID2_Reply_Get_Blob_Id_BaseReply to ID2-Request-Get-Blob-Id
CID2_Reply_Get_Blob_Seq_idsCID2_Reply_Get_Blob_Seq_ids --
CID2_Reply_Get_Blob_Seq_ids_BaseReply to ID2-Request-Get-Blob-Info
CID2_Reply_Get_PackageCID2_Reply_Get_Package --
CID2_Reply_Get_Package_BaseReply to ID2-Request-Get-Packages
CID2_Reply_Get_Seq_idCID2_Reply_Get_Seq_id --
CID2_Reply_Get_Seq_id_BaseReply to ID2-Request-Get-Seq-id
CID2_Reply_ReGet_BlobCID2_Reply_ReGet_Blob --
CID2_Reply_ReGet_Blob_BaseReply to ID2-Request-ReGet-Blob
CID2_RequestCID2_Request --
CID2_Request_BaseCID2_Request_Base --
CID2_Request_Get_Blob_IdCID2_Request_Get_Blob_Id --
CID2_Request_Get_Blob_Id_BaseReturn blob-id with specified seq-id
CID2_Request_Get_Blob_InfoCID2_Request_Get_Blob_Info --
CID2_Request_Get_Blob_Info_BaseReturn some information related to the blob
CID2_Request_Get_PackagesCID2_Request_Get_Packages --
CID2_Request_Get_Packages_BaseRequest for set of params packages know by server
CID2_Request_Get_Seq_idCID2_Request_Get_Seq_id --
CID2_Request_Get_Seq_id_BaseRequested sequence ID, can be any string or Seq-id
CID2_Request_PacketCID2_Request_Packet --
CID2_Request_Packet_BaseRequest types
CID2_Request_ReGet_BlobCID2_Request_ReGet_Blob --
CID2_Request_ReGet_Blob_BaseThis is similar to FTP reget command
CID2_Seq_idCID2_Seq_id --
CID2_Seq_id_BaseCID2_Seq_id_Base --
CID2ClientCID2Client --
CID2Client_BaseCID2Client_Base --
CId2Compressor
CId2FetchApp
CId2Reader
CId2ReaderBase
CId2ReaderCFClass factory for ID2 reader
CID2S_Bioseq_IdsCID2S_Bioseq_Ids --
CID2S_Bioseq_Ids_BaseCID2S_Bioseq_Ids_Base --
CID2S_Bioseq_InfoCID2S_Bioseq_Info --
CID2S_Bioseq_Info_BaseCID2S_Bioseq_Info_Base --
CID2S_Bioseq_place_InfoCID2S_Bioseq_place_Info --
CID2S_Bioseq_place_Info_BaseCID2S_Bioseq_place_Info_Base --
CID2S_Bioseq_set_IdsCID2S_Bioseq_set_Ids --
CID2S_Bioseq_set_Ids_BaseCID2S_Bioseq_set_Ids_Base --
CID2S_Bioseqs_InfoCID2S_Bioseqs_Info --
CID2S_Bioseqs_Info_BaseCID2S_Bioseqs_Info_Base --
CID2S_ChunkCID2S_Chunk --
CID2S_Chunk_BaseCID2S_Chunk_Base --
CID2S_Chunk_ContentCID2S_Chunk_Content --
CID2S_Chunk_Content_BaseDescription of information in this chunk Place means id of Bioseq or Bioseq-set
CID2S_Chunk_DataCID2S_Chunk_Data --
CID2S_Chunk_Data_BaseCID2S_Chunk_Data_Base --
CID2S_Chunk_IdCID2S_Chunk_Id --
CID2S_Chunk_Id_BaseUtility types
CID2S_Chunk_InfoCID2S_Chunk_Info --
CID2S_Chunk_Info_BaseCID2S_Chunk_Info_Base --
CID2S_Feat_type_InfoCID2S_Feat_type_Info --
CID2S_Feat_type_Info_BaseCID2S_Feat_type_Info_Base --
CID2S_Gi_IntervalCID2S_Gi_Interval --
CID2S_Gi_Interval_BaseCID2S_Gi_Interval_Base --
CID2S_Gi_IntsCID2S_Gi_Ints --
CID2S_Gi_Ints_BaseCID2S_Gi_Ints_Base --
CID2S_Gi_RangeCID2S_Gi_Range --
CID2S_Gi_Range_BaseCID2S_Gi_Range_Base --
CID2S_IntervalCID2S_Interval --
CID2S_Interval_BaseCID2S_Interval_Base --
CID2S_Reply_Get_ChunkCID2S_Reply_Get_Chunk --
CID2S_Reply_Get_Chunk_BaseReply to ID2S-Request-Get-Chunks
CID2S_Reply_Get_Split_InfoCID2S_Reply_Get_Split_Info --
CID2S_Reply_Get_Split_Info_BaseReply to ID2-Request-Get-Blob-Info
CID2S_Request_Get_ChunksCID2S_Request_Get_Chunks --
CID2S_Request_Get_Chunks_BaseRequest for specific chunks
CID2S_Seq_annot_InfoCID2S_Seq_annot_Info --
CID2S_Seq_annot_Info_BaseCID2S_Seq_annot_Info_Base --
CID2S_Seq_annot_place_InfoCID2S_Seq_annot_place_Info --
CID2S_Seq_annot_place_Info_BaseCID2S_Seq_annot_place_Info_Base --
CID2S_Seq_assembly_InfoCID2S_Seq_assembly_Info --
CID2S_Seq_assembly_Info_BaseCID2S_Seq_assembly_Info_Base --
CID2S_Seq_data_InfoCID2S_Seq_data_Info --
CID2S_Seq_data_Info_BaseCID2S_Seq_data_Info_Base --
CID2S_Seq_descr_InfoCID2S_Seq_descr_Info --
CID2S_Seq_descr_Info_BaseCID2S_Seq_descr_Info_Base --
CID2S_Seq_feat_Ids_InfoCID2S_Seq_feat_Ids_Info --
CID2S_Seq_feat_Ids_Info_BaseCID2S_Seq_feat_Ids_Info_Base --
CID2S_Seq_id_IntervalCID2S_Seq_id_Interval --
CID2S_Seq_id_Interval_BaseCID2S_Seq_id_Interval_Base --
CID2S_Seq_id_IntsCID2S_Seq_id_Ints --
CID2S_Seq_id_Ints_BaseCID2S_Seq_id_Ints_Base --
CID2S_Seq_locCID2S_Seq_loc --
CID2S_Seq_loc_BaseID2S-Seq-loc is used to represent unordered and unstranded set of intervals on set of sequences
CID2S_Seq_map_InfoCID2S_Seq_map_Info --
CID2S_Seq_map_Info_BaseCID2S_Seq_map_Info_Base --
CID2S_Sequence_PieceCID2S_Sequence_Piece --
CID2S_Sequence_Piece_BaseCID2S_Sequence_Piece_Base --
CID2S_Split_InfoCID2S_Split_Info --
CID2S_Split_Info_BaseBlob split info types
CId_Base+
CId_EditCommand< add >
CId_pat
CId_pat_BaseJust to identify a patent
CIdCheckListCIdCheckList --
CIdCheckList_BaseCIdCheckList_Base --
CIdDataValue
CIdDeMux< TBV, TBVFact >Id to coordinates demultiplexer
CIdentifiersPanel
CIdentityRelation
CIdGeneratorCIdGenerator - generates consecutive integer identifiers
CIdHandler
CIdlerWrapper
CIdleWatcher
CIdLinkSetCIdLinkSet --
CIdLinkSet_BaseCIdLinkSet_Base --
CIdListCIdList --
CIdList_BaseCIdList_Base --
CIdLoc
CIdMapperIdMapper base class implementation
CIdMapperApp
CIdMapperBuiltinIdMapper implementation using hardcoded values
CIdMapperCompositeIdMapper implementation combining multiple id mappers with the selected priorities
CIdMapperConfigIdMapper implementation using an external configuration file
CIdMapperDatabaseIdMapper implementation using an external database
CIdMapperException
CIdMapperGCAssemblyIdMapper implementation using a GC-Assembly
CIdMapperScopeIdMapper implementaion using CScope
CIDsCIDs class to hold sorted list of IDs
CWinMaskUtil::CIdSetBase class for sets of seq_id representations used with
CWinMaskUtil::CIdSet_SeqIdImplementation of CIdSet that compares CSeq_id handles
CWinMaskUtil::CIdSet_TextMatchImplementation of CIdSet that does substring matching
CGBLoadWizard::CIdsPage
CIDSubpanel
CIdUrlListCIdUrlList --
CIdUrlList_BaseCIdUrlList_Base --
CIdUrlSetCIdUrlSet --
CIdUrlSet_BaseCIdUrlSet_Base --
CIgAnnotation
CIgAnnotationInfo
CIgapIntron
CIgapIntronChain
CIgBlast
CIgBlastArgsArgument class to collect options specific to igBLAST
CIgBlastnApp
CIgBlastnAppArgsHandles command line arguments for igblastn binary
CIgBlastOptions
CIgBlastpApp
CIgBlastpAppArgsHandles command line arguments for igblastp binary
CIgBlastResults
CIgBlastTabularInfoClass containing information needed for tabular formatting of BLAST results
CIgBlastVersionKeeps track of the version of IgBLAST in the NCBI C++ toolkit
CIgnoreImportLibraryCIgnoreImportLibrary --
CIgnoreImportLibrary_BaseNcbi: removed ExcludeDeploymentUrl ncbi: removed ExcludedPermissions ncbi: removed FallbackCulture ncbi: removed FileAlignment ncbi: removed FileUpgradeFlags ncbi: removed FormFactorID ncbi: removed FrameworkPathOverride ncbi: removed GenerateManifests ncbi: removed GenerateSerializationAssemblies ncbi: removed HostInBrowser
CIGSFlankPanel
CIGSPanel
CImage
CImageException
CImageIO
CImageIOBmp
CIma