src/algo/align/util/align_shadow.cpp File Reference

#include <ncbi_pch.hpp>
#include <algo/align/util/align_shadow.hpp>
#include <objects/seqalign/Std_seg.hpp>
#include <objects/seqloc/Seq_loc.hpp>
#include <objects/seqloc/Seq_interval.hpp>
#include <algorithm>
#include <numeric>
#include <math.h>

Include dependency graph for align_shadow.cpp:

Go to the source code of this file.

Typedefs
typedef pair< objects::ENa_strand, objects::ENa_strand >	TStrands
Functions
const CAlignShadow::TCoord	g_UndefCoord (numeric_limits< CAlignShadow::TCoord >::max())
TStrands	RetrieveStdStrands (const objects::CSeq_align &seq_align)
CNcbiOstream &	operator<< (CNcbiOstream &os, const CAlignShadow &align_shadow)

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Typedef Documentation

typedef pair<objects::ENa_strand, objects::ENa_strand> TStrands [static]

Definition at line 50 of file align_shadow.cpp.

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Function Documentation

const CAlignShadow::TCoord @0::g_UndefCoord (  numeric_limits< CAlignShadow::TCoord >::  max()  )  [static]

Referenced by CAlignShadow::CAlignShadow(), CAlignShadow::SetMax(), CAlignShadow::SetMin(), and CAlignShadow::SetStrand().

CNcbiOstream& operator<< (  CNcbiOstream &  os, const CAlignShadow &  align_shadow )

Definition at line 205 of file align_shadow.cpp. References CAlignShadow::GetId(), USING_SCOPE, and CAlignShadow::x_PartialSerialize().

TStrands RetrieveStdStrands (  const objects::CSeq_align &  seq_align  )

Definition at line 53 of file align_shadow.cpp. References GetStrand(), and USING_SCOPE.

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