src/app/agpconvert/agpconvert.cpp File Reference

#include <ncbi_pch.hpp>
#include <corelib/ncbiapp.hpp>
#include <corelib/ncbienv.hpp>
#include <corelib/ncbiargs.hpp>
#include <corelib/ncbifile.hpp>
#include <serial/serial.hpp>
#include <serial/objostr.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/general/Date.hpp>
#include <objects/seqset/Seq_entry.hpp>
#include <objects/seqset/Bioseq_set.hpp>
#include <objects/seqloc/Seq_id.hpp>
#include <objtools/readers/fasta.hpp>
#include <objects/seq/Bioseq.hpp>
#include <objects/seq/Seq_inst.hpp>
#include <objects/seq/Seqdesc.hpp>
#include <objtools/readers/agp_read.hpp>
#include <objects/seq/Seq_literal.hpp>
#include <objects/seq/Seq_descr.hpp>
#include <objects/seq/Seq_ext.hpp>
#include <objects/seq/Delta_seq.hpp>
#include <objects/seq/Delta_ext.hpp>
#include <objects/general/Int_fuzz.hpp>
#include <objects/seqloc/Seq_loc.hpp>
#include <objects/seqloc/Seq_interval.hpp>
#include <objects/seqfeat/SubSource.hpp>
#include <objects/seqfeat/BioSource.hpp>
#include <corelib/ncbitime.hpp>
#include <corelib/ncbiexec.hpp>
#include <objects/submit/Seq_submit.hpp>
#include <objects/submit/Submit_block.hpp>
#include <objects/general/Dbtag.hpp>
#include <objects/seqfeat/Org_ref.hpp>
#include <objects/seqfeat/OrgMod.hpp>
#include <objects/seqfeat/OrgName.hpp>
#include <objects/taxon1/taxon1.hpp>
#include <objects/pub/Pub.hpp>
#include <objects/biblio/Cit_sub.hpp>
#include <objects/seq/Pubdesc.hpp>
#include <objects/pub/Pub_equiv.hpp>
#include <algorithm>

Include dependency graph for agpconvert.cpp:

Go to the source code of this file.

Classes
class	CAgpconvertApplication
struct	SIsOldName
Functions
	USING_SCOPE (objects)
static int	s_GetTaxid (const COrg_ref &org_ref)
int	main (int argc, const char *argv[])
Variables
	USING_NCBI_SCOPE

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Function Documentation

int main (  int  argc, const char *  argv[] )

Definition at line 780 of file agpconvert.cpp. References eDS_Default.

static int s_GetTaxid (  const COrg_ref &  org_ref  )  [static]

Definition at line 186 of file agpconvert.cpp. References COrg_ref_Base::GetDb(), and ITERATE.

USING_SCOPE (  objects   )

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Variable Documentation

USING_NCBI_SCOPE

Definition at line 78 of file agpconvert.cpp.

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