AceView offers a comprehensive annotation of human, mouse and nematode genes
reconstructed by co-alignment and clustering of all publicly available
mRNAs and ESTs on the genome sequence. Our goals are to offer a reliable
up-to-date resource on the genes, their functions, alternative variants,
expression, regulation and interactions, in the hope to stimulate
further validating experiments at the bench
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Caenorhabditis elegans essential gene car-1, encoding putative alpha synuclein binding protein, required for the stability of the cytokinetic furrow, Cytokinesis, Apoptosis, RNA-associated.
TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Compact gene diagram
Alternative mRNAs are shown aligned from 5' to 3' on a virtual genome where introns have been shrunk to a minimal length. Exon size is proportional to length, intron height reflects the number of cDNAs supporting each intron, the small numbers show the support of the introns in deep sequencing (with details in mouse-over) . Introns of the same color are identical, of different colors are different. 'Good proteins' are pink, partial or not-good proteins are yellow, uORFs are green. 5' cap or3' poly A flags show completeness of the transcript.
Read more...
Mouse over the ending of each transcript gives tissues from which the supporting cDNAs were extracted. Details on tissue of origin for each intron and exon is available from the
intron and exons table.
Click on any transcript to open the specific mRNA page, to see the exact cDNA clone support and eventual SNPs and to get details on tissues, sequences, mRNA and protein annotations. Proteins supported by a single continuous cDNA sequence lead to underlining the name/ending of the variant. Names not underlined result from cDNA concatenation in the coding region and should be experimentally checked.
Introns are depicted by broken lines; the height of the top of each intron reflects the relative number of clones supporting this intron.
]^[ A pink broken line denotes an intron with standard boundaries (gt-ag or gc-ag) that is exactly supported (i.e. a cDNA sequence exactly matches the genome over 16 bp, 8 on both sides of the intron).
] ^ ] A blue broken line denotes non-standard introns, exactly supported, but with non-standard at-ac or any other boundaries.
]-[ Pink and
] - ] blue straight lines represent 'fuzzy' introns of the standard and non-standard types respectively, those introns do not follow the 16 bp rule. Black straight lines ]-[denote gaps in the alignments.
Exons: Wide filled pink areas represent putative protein coding regions, narrow empty pink boxes represent the 5'UTR (on the left) and 3' UTR (on the right). Flags identify validated endings: cap site on the 5' side, polyadenylation site on the 3' side. Filled flags correspond to frequent events while empty flags have lesser supporting cDNAs (yet all are validated); at the 3' side, black flags are associated to the main AATAAA signal,
blue flags to any single letter variant of the main . More explanations are given in the
gene help file
Expression and GenBank cDNA support
Tissues where expression was observed (from 83 cDNA clones)
Origin of the cDNAs, as reported in GenBank/dbEST (tissue, stage, pathological or normal) shows that the gene is expressed in whole animal (seen 86 times).
Libraries: Kohara embryonic lambda gt11 library: yk462c11;
early embryo, Stratagene library [PMID1302005]: CEESI74;
Kohara Sugano L2 larvae cap-selected library: yk818d11;
Kohara mixed stage library, from him-8 strain, containing 15-30% males: yk204a7;
Exelixis: 1763740, 1781304, 1780022.
Expression
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The
expression profile for the gene, derived from the proportion of animals at each stage in each Kohara library is: embryos 23%, L1 or L2 larvae 22%, L3 to adult (including dauer) 54%.
In situ hybridisation pictures to all stages of development are available from Kohara NextDB (may be slow, but please be patient, it is worth it !). Note that this extraordinary resource is still unpublished: Users of the data presented on the NextDB web pages should not publish the information without
Kohara's permission and appropriate acknowledgment. They also appreciate any suggestions and comments.
83 cDNA clones support the 2 variants of gene car-1
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This table helps analyze the pattern of expression of the gene, the tissue, cell type or disease state specificity of the alternative variants and to select cDNA clones suitable for your experiments.
cDNA accession Links to the sequence |
Tissue
most 5' clones in red |
Match mRNA |
From bp to bp in mRNA |
From bp to bp in accs. |
Features |
Anomalies detected by AceView |
Accession match over (% length) |
Base differences relative to genome (% identity) |
EX1420516 | | .b | 494 to 1081 | 163 to 754 | | | 592/708 (83 %) | 16 diff (97.8 %id) |
EX1763740_3 | | .a | 565 to 1211 | 83 to 731 | tiling clone, | Submitted on the opposite strand | 649/787 (82 %) | 47 diff (94.1 %id) |
EX1763740_5 | | .a | 1270 to 1664 | 459 to 64 | AAA | Submitted on the opposite strand | 396/736 (53 %) | 9 diff (98.8 %id) |
EX1768676_3 | | .b | 670 to 1195 | 117 to 641 | fully sequenced, | Submitted on the opposite strand | 525/525 (100 %) | 1 diff (99.9 %id) |
EX1768676_5 | | .b | 1165 to 1427 | 327 to 66 | fully sequenced, AAA | Submitted on the opposite strand | 262/262 (100 %) | 3 diff (98.9 %id) |
EX1768730_3 | | .b | 845 to 1419 | 110 to 684 | fully sequenced, | Submitted on the opposite strand | 575/575 (100 %) | 1 diff (99.9 %id) |
EX1768730_5 | | .b | 1346 to 1421 | 145 to 70 | fully sequenced, AAA | Submitted on the opposite strand | 76/76 (100 %) | 3 diff (96.1 %id) |
EX1780022_3 | | .a | 1144 to 1662 | 116 to 634 | fully sequenced, | Submitted on the opposite strand | 519/519 (100 %) | 1 diff (99.9 %id) |
EX1780022_5 | | .a | 1595 to 1665 | 135 to 65 | fully sequenced, AAA | Submitted on the opposite strand | 71/71 (100 %) | 3 diff (95.8 %id) |
EX1781304_3 | | .a | 1107 to 1665 | 167 to 724 | AAA | | 558/607 (91 %) | 6 diff (99.1 %id) |
EX1784437 | | .b | 700 to 1192 | 117 to 613 | | | 497/760 (65 %) | 38 diff (95.0 %id) |
EX1785295_3 | | .b | 927 to 1421 | 109 to 603 | | | 495/703 (70 %) | 1 diff (99.9 %id) |
EX2721482 | | .b | 633 to 1353 | 106 to 823 | tiling clone, | | 718/718 (100 %) | 6 diff (99.2 %id) |
EX2722081 | | .b | 69 to 746 | 104 to 783 | | | 680/684 (99 %) | 4 diff (99.5 %id) |
CEESD15F | | .b | 1062 to 1419 | 357 to 1 | | | 357/357 (100 %) | 1 diff (99.8 %id) |
CEESI74F | | .a | 1397 to 1668 | 273 to 1 | | Submitted on the opposite strand | 273/287 (95 %) | 2 diff (99.4 %id) |
CEESY38F | | .b | 539 to 914 | 1 to 376 | | | 376/376 (100 %) | 0 diff (100 %id) |
CEESY91F | | .b | 539 to 960 | 1 to 421 | | | 421/424 (99 %) | 4 diff (99.1 %id) |
GB:CK579389 | | .b | 7 to 346 | 1 to 340 | | | 340/340 (100 %) | 0 diff (100 %id) |
GB:CK579987 | | .b | 581 to 1001 | 1 to 422 | | | 422/424 (99 %) | 6 diff (98.6 %id) |
GB:CK583261 | | .b | 7 to 521 | 1 to 515 | | | 515/515 (100 %) | 0 diff (100 %id) |
GB:T01802 | | .b | 539 to 865 | 1 to 326 | | | 326/326 (100 %) | 4 diff (98.8 %id) |
OSTF_10011C10 | whole animal | .b | 8 to 583 | 111 to 685 | fully sequenced, | | 575/575 (100 %) | 0 diff (100 %id) |
OSTR_10011C10 | whole animal | .b | 553 to 1028 | 602 to 126 | fully sequenced, | | 477/477 (100 %) | 9 diff (98.2 %id) |
yk102e4.3 | whole animal | .b | 1083 to 1335 | 253 to 1 | | | 253/551 (45 %) | 1 diff (99.9 %id) |
yk102e4.5 | whole animal | .b | 28 to 530 | 45 to 544 | | | 500/517 (96 %) | 10 diff (98.1 %id) |
yk142e12.3 | | .b | 1118 to 1361 | 289 to 46 | | | 244/500 (48 %) | 0 diff (100 %id) |
yk142e12.5 | | .b | 12 to 476 | 30 to 497 | | | 468/609 (76 %) | 6 diff (99.1 %id) |
yk156a9.3 | | .b | 1078 to 1410 | 334 to 1 | | | 334/591 (56 %) | 2 diff (99.7 %id) |
yk156a9.5 | | .b | 9 to 611 | 21 to 631 | | | 611/633 (96 %) | 10 diff (98.5 %id) |
yk204a7.3 | whole animal | .a | 1400 to 1652 | 253 to 1 | fully sequenced, | | 253/253 (100 %) | 1 diff (99.7 %id) |
yk204a7.5 | whole animal | .a | 1028 to 1668 | 30 to 670 | fully sequenced, AAA | | 641/641 (100 %) | 0 diff (100 %id) |
yk234a11.3 | whole animal | .b | 910 to 1425 | 514 to 1 | | | 514/794 (64 %) | 23 diff (97.2 %id) |
yk234a11.5 | whole animal | .b | 328 to 879 | 26 to 579 | | | 554/659 (84 %) | 8 diff (98.8 %id) |
yk256e11.3 | | .b | 1094 to 1595 | 500 to 1 | tiling clone, | | 500/870 (57 %) | 3 diff (99.7 %id) |
yk256e11.5 | | .b | 8 to 778 | 24 to 794 | | | 771/771 (100 %) | 11 diff (98.6 %id) |
yk269f8.3 | | .b | 1099 to 1597 | 499 to 1 | | | 499/851 (58 %) | 0 diff (100 %id) |
yk269f8.5 | | .b | 10 to 646 | 22 to 654 | | | 633/805 (78 %) | 25 diff (96.9 %id) |
yk281e3.3 | | .b | 1110 to 1598 | 489 to 1 | | | 489/854 (57 %) | 0 diff (100 %id) |
yk281e3.5 | | .b | 1 to 654 | 32 to 687 | SL1 | | 656/661 (99 %) | 26 diff (96.1 %id) |
yk332c8.5 | | .b | 1 to 505 | 26 to 529 | | | 507/789 (64 %) | 6 diff (99.3 %id) |
yk343c12.3 | | .b | 916 to 1404 | 488 to 1 | | | 488/881 (55 %) | 0 diff (100 %id) |
yk343c12.5 | | .b | 9 to 404 | 26 to 429 | | | 404/730 (55 %) | 20 diff (97.3 %id) |
yk362c10.3 | whole animal | .b | 889 to 1415 | 527 to 1 | | | 527/782 (67 %) | 8 diff (99.0 %id) |
yk362c10.5 | whole animal | .b | 247 to 883 | 17 to 653 | | | 637/702 (90 %) | 3 diff (99.6 %id) |
yk378c4.3 | whole animal | .b | 881 to 1414 | 533 to 1 | | | 533/645 (82 %) | 12 diff (98.2 %id) |
yk378c4.5 | whole animal | .b | 296 to 884 | 23 to 612 | | | 590/742 (79 %) | 6 diff (99.2 %id) |
yk378c7.3 | whole animal | .b | 889 to 1407 | 517 to 1 | | | 517/664 (77 %) | 7 diff (99.0 %id) |
yk402e12.3 | | .b | 901 to 1410 | 507 to 1 | | | 507/569 (89 %) | 9 diff (98.5 %id) |
yk402e12.5 | | .b | 1 to 690 | 34 to 709 | SL1 | | 676/748 (90 %) | 37 diff (95.1 %id) |
yk457e8.3 | | .b | 934 to 1607 | 657 to 1 | | | 657/661 (99 %) | 5 diff (99.3 %id) |
yk457e8.5 | | .b | 8 to 714 | 28 to 731 | | | 704/706 (99 %) | 57 diff (92.0 %id) |
yk462c11.3 | | .a | 700 to 1253 | 551 to 1 | fully sequenced, | | 551/551 (100 %) | 4 diff (99.3 %id) |
yk462c11.5 | | .a | 59 to 730 | 17 to 680 | tiling clone, fully sequenced, | | 664/664 (100 %) | 23 diff (96.6 %id) |
yk470f2.3 | | .b | 1122 to 1603 | 482 to 1 | | | 482/658 (73 %) | 5 diff (99.3 %id) |
yk470f2.5 | | .b | 1 to 660 | 33 to 685 | SL1 | | 653/695 (93 %) | 34 diff (95.2 %id) |
yk473a1.3 | | .b | 922 to 1399 | 475 to 1 | | | 475/656 (72 %) | 2 diff (99.7 %id) |
yk473a1.5 | | .b | 1 to 711 | 21 to 718 | SL1 | | 698/698 (100 %) | 42 diff (94.0 %id) |
yk511a8.3 | | .b | 928 to 1403 | 476 to 1 | | | 476/746 (63 %) | 5 diff (99.4 %id) |
yk511a8.5 | | .b | 1 to 433 | 36 to 471 | SL1 | | 436/646 (67 %) | 5 diff (99.3 %id) |
yk512c1.3 | | .b | 1100 to 1593 | 496 to 1 | | | 496/742 (66 %) | 5 diff (99.4 %id) |
yk512c1.5 | | .b | 81 to 656 | 50 to 619 | | | 570/687 (82 %) | 33 diff (95.2 %id) |
yk518e8.3 | | .b | 1109 to 1601 | 498 to 6 | | | 493/649 (75 %) | 6 diff (99.1 %id) |
yk518e8.5 | | .b | 1 to 614 | 30 to 637 | SL1 | | 608/714 (85 %) | 32 diff (95.6 %id) |
yk543h11.3 | whole animal | .b | 886 to 1418 | 532 to 1 | | | 532/702 (75 %) | 12 diff (98.3 %id) |
yk543h11.5 | whole animal | .b | 142 to 786 | 22 to 661 | | | 640/784 (81 %) | 25 diff (96.9 %id) |
yk546b6.3 | whole animal | .b | 797 to 1414 | 617 to 1 | fully sequenced, | | 617/617 (100 %) | 2 diff (99.7 %id) |
yk546b6.5 | whole animal | .b | 110 to 827 | 21 to 734 | fully sequenced, | | 714/714 (100 %) | 5 diff (99.3 %id) |
yk556g6.3 | whole animal | .b | 951 to 1412 | 462 to 1 | | | 462/670 (68 %) | 0 diff (100 %id) |
yk556g6.5 | whole animal | .b | 47 to 743 | 24 to 716 | | | 693/693 (100 %) | 38 diff (94.6 %id) |
yk575h5.3 | whole animal | .b | 910 to 1407 | 497 to 1 | fully sequenced, | | 497/497 (100 %) | 2 diff (99.6 %id) |
yk575h5.5 | whole animal | .b | 322 to 931 | 6 to 617 | fully sequenced, | | 612/617 (99 %) | 10 diff (98.4 %id) |
yk592g6.3 | | .b | 1181 to 1409 | 228 to 1 | | | 228/663 (34 %) | 0 diff (100 %id) |
yk592g6.5 | | .b | 1 to 660 | 29 to 690 | SL1 | | 662/663 (99 %) | 18 diff (97.3 %id) |
yk634f10.3 | | .b | 814 to 1418 | 604 to 1 | | | 604/612 (98 %) | 4 diff (99.4 %id) |
yk634f10.5 | | .b | 28 to 674 | 24 to 672 | | | 649/649 (100 %) | 23 diff (96.5 %id) |
yk642e3.5 | | .b | 1 to 320 | 18 to 337 | | | 322/356 (90 %) | 5 diff (98.6 %id) |
yk678h12.5 | | .b | 24 to 538 | 27 to 542 | | | 516/670 (77 %) | 2 diff (99.8 %id) |
yk708b2.3 | whole animal | .b | 1037 to 1597 | 558 to 5 | | | 554/660 (83 %) | 12 diff (98.2 %id) |
yk708b2.5 | whole animal | .b | 1 to 623 | 106 to 733 | SL1 | | 628/628 (100 %) | 21 diff (96.7 %id) |
yk725d8.3 | whole animal | .b | 661 to 1418 | 763 to 1 | fully sequenced, | | 763/763 (100 %) | 25 diff (96.8 %id) |
yk725d8.5 | whole animal | .b | 1 to 691 | 92 to 793 | fully sequenced, SL1 | | 702/702 (100 %) | 6 diff (99.2 %id) |
yk725f10.3 | whole animal | .b | 706 to 1407 | 729 to 11 | fully sequenced, | | 719/729 (98 %) | 12 diff (98.4 %id) |
yk725f10.5 | whole animal | .b | 3 to 736 | 64 to 798 | fully sequenced, capped | | 735/735 (100 %) | 1 diff (99.9 %id) |
yk728c1.3 | whole animal | .b | 786 to 1404 | 616 to 1 | | | 616/717 (85 %) | 11 diff (98.5 %id) |
yk728c1.5 | whole animal | .b | 1 to 427 | 84 to 512 | SL1 | | 429/637 (67 %) | 13 diff (98.0 %id) |
yk729c6.3 | whole animal | .b | 1023 to 1401 | 426 to 44 | | | 383/961 (39 %) | 0 diff (100 %id) |
yk729c6.5 | whole animal | .b | 1 to 820 | 95 to 920 | SL1 | | 826/831 (99 %) | 16 diff (98.1 %id) |
yk734c2.3 | whole animal | .b | 886 to 1418 | 545 to 1 | | | 545/993 (54 %) | 29 diff (97.1 %id) |
yk734c2.5 | whole animal | .b | 4 to 384 | 104 to 498 | capped | | 395/625 (63 %) | 16 diff (97.5 %id) |
yk739e4.3 | whole animal | .b | 1086 to 1407 | 337 to 9 | | | 329/413 (79 %) | 10 diff (97.6 %id) |
yk739e4.5 | whole animal | .b | 1 to 699 | 85 to 789 | SL1 | | 705/705 (100 %) | 7 diff (99.1 %id) |
yk748a6.3.
matches multiple genes | whole animal | .b | 988 to 1409 | 432 to 7 | | Chimeric: part of this clone comes from one gene, the rest from another, also hits gene 5P564 | 426/508 (83 %) | 0 diff (100 %id) |
yk748g5.3 | whole animal | .b | 885 to 1417 | 533 to 1 | | | 533/764 (69 %) | 16 diff (98.0 %id) |
yk748g5.5 | whole animal | .b | 1 to 683 | 89 to 778 | SL1 | | 690/690 (100 %) | 10 diff (98.6 %id) |
yk750g4.3 | whole animal | .b | 917 to 1601 | 683 to 1 | | | 683/689 (99 %) | 8 diff (98.9 %id) |
yk750g4.5 | whole animal | .b | 1 to 883 | 87 to 969 | SL1 | | 883/883 (100 %) | 1 diff (99.9 %id) |
yk815d2.3 | whole animal | .b | 915 to 1602 | 690 to 1 | | | 690/694 (99 %) | 13 diff (98.2 %id) |
yk815d2.5 | whole animal | .b | 1 to 853 | 86 to 936 | SL1 | | 851/851 (100 %) | 11 diff (98.8 %id) |
yk818d11.3.
matches multiple genes | whole animal | .a | 973 to 1663 | 695 to 2 | | Chimeric: part of this clone comes from one gene, the rest from another, also hits gene sym-1 | 694/853 (81 %) | 0 diff (100 %id) |
yk843e7.5 | whole animal | .b | 1 to 838 | 87 to 945 | SL1 | | 859/879 (97 %) | 31 diff (96.5 %id) |
yk881d7.3 | whole animal | .b | 1080 to 1565 | 527 to 35 | | | 493/528 (93 %) | 0 diff (100 %id) |
yk881d7.5 | whole animal | .b | 1 to 771 | 95 to 875 | SL1 | | 781/828 (94 %) | 19 diff (97.8 %id) |
GB:AU220847 | whole animal | .b | 1125 to 1577 | 452 to 1 | | | 452/452 (100 %) | 1 diff (99.8 %id) |
yk1002f6.5 | whole animal | .b | 1 to 874 | 90 to 953 | SL1 | | 864/864 (100 %) | 21 diff (97.6 %id) |
GB:BJ115643 | whole animal | .b | 742 to 1190 | 1 to 447 | | | 447/447 (100 %) | 1 diff (99.8 %id) |
GB:BJ115998 | whole animal | .b | 1 to 385 | 23 to 407 | SL1 | | 385/385 (100 %) | 1 diff (99.8 %id) |
yk1198a6.3 | whole animal | .b | 1027 to 1602 | 570 to 1 | | | 570/570 (100 %) | 10 diff (98.3 %id) |
GB:BJ121034 | whole animal | .b | 1 to 386 | 21 to 406 | SL1' | | 386/386 (100 %) | 1 diff (99.8 %id) |
yk1263d4.3 | whole animal | .b | 709 to 1603 | 894 to 1 | | | 894/895 (99 %) | 3 diff (99.7 %id) |
yk1324b8.3 | whole animal | .b | 796 to 1597 | 807 to 9 | fully sequenced, | | 799/807 (99 %) | 7 diff (99.2 %id) |
yk1324b8.5 | whole animal | .b | 85 to 826 | 70 to 815 | fully sequenced, | | 746/746 (100 %) | 3 diff (99.6 %id) |
yk1343c5.3 | whole animal | .b | 1243 to 1508 | 269 to 1 | fully sequenced, | | 269/269 (100 %) | 5 diff (98.2 %id) |
yk1343c5.5 | whole animal | .b | 741 to 1509 | 66 to 832 | fully sequenced, AAA | | 767/767 (100 %) | 8 diff (99.0 %id) |
yk1380c8.3 | whole animal | .b | 879 to 1595 | 718 to 1 | | | 718/890 (80 %) | 18 diff (98.0 %id) |
yk1380c8.5 | whole animal | .b | 1 to 811 | 82 to 892 | SL1 | | 811/814 (99 %) | 5 diff (99.4 %id) |
yk1412d2.3 | whole animal | .b | 886 to 1593 | 711 to 2 | | Chimeric: part of this clone comes from one gene, the rest from another (mosaic with the ribosomal gene rrn-1) | 710/738 (96 %) | 0 diff (100 %id) |
yk1412d2.5 | whole animal | .b | 1 to 755 | 176 to 934 | SL1 | Chimeric: part of this clone comes from one gene, the rest from another (mosaic with the ribosomal gene rrn-1) | 759/762 (99 %) | 15 diff (98.1 %id) |
yk1438d12.3 | whole animal | .b | 1262 to 1602 | 328 to 1 | | | 328/635 (51 %) | 19 diff (97.1 %id) |
yk1438d12.5 | whole animal | .b | 1 to 808 | 80 to 887 | SL1 | | 808/808 (100 %) | 5 diff (99.4 %id) |
yk1439g5.3 | whole animal | .b | 925 to 1595 | 673 to 1 | | | 673/785 (85 %) | 8 diff (99.0 %id) |
yk1439g5.5 | whole animal | .b | 1 to 845 | 83 to 924 | SL1 | | 842/842 (100 %) | 11 diff (98.7 %id) |
yk1467e5.3 | whole animal | .b | 909 to 1594 | 696 to 1 | | | 696/884 (78 %) | 27 diff (97.0 %id) |
yk1467e5.5 | whole animal | .b | 1 to 748 | 82 to 840 | SL1 | | 759/855 (88 %) | 16 diff (98.2 %id) |
yk1473a1.3 | whole animal | .b | 928 to 1595 | 670 to 1 | | | 670/952 (70 %) | 12 diff (98.8 %id) |
yk1473a1.5 | whole animal | .b | 1 to 811 | 77 to 888 | SL1 | | 812/819 (99 %) | 9 diff (99.0 %id) |
yk1507g1.3 | whole animal | .b | 729 to 1409 | 683 to 3 | fully sequenced, | | 681/683 (99 %) | 26 diff (96.2 %id) |
yk1507g1.5 | whole animal | .b | 1 to 759 | 86 to 841 | fully sequenced, SL1 | | 756/756 (100 %) | 19 diff (97.5 %id) |
yk1518h9.3 | whole animal | .b | 1008 to 1595 | 591 to 1 | | | 591/685 (86 %) | 16 diff (97.7 %id) |
yk1530f6.3 | whole animal | .b | 802 to 1581 | 793 to 13 | fully sequenced, | | 781/793 (98 %) | 17 diff (97.9 %id) |
yk1530f6.5 | whole animal | .b | 1 to 832 | 86 to 917 | fully sequenced, SL1 | | 832/832 (100 %) | 19 diff (97.8 %id) |
yk1535g3.3 | whole animal | .b | 757 to 1595 | 837 to 1 | fully sequenced, | | 837/837 (100 %) | 10 diff (98.9 %id) |
yk1535g3.5 | whole animal | .b | 1 to 787 | 78 to 873 | fully sequenced, SL1 | | 796/796 (100 %) | 14 diff (98.3 %id) |
yk1638g11.3 | whole animal | .b | 886 to 1593 | 710 to 2 | | Chimeric: part of this clone comes from one gene, the rest from another (mosaic with the ribosomal gene rrn-1) | 709/833 (85 %) | 0 diff (100 %id) |
yk1638g11.5 | whole animal | .b | 1 to 744 | 180 to 927 | SL1 | Chimeric: part of this clone comes from one gene, the rest from another (mosaic with the ribosomal gene rrn-1) | 748/749 (99 %) | 19 diff (97.5 %id) |
yk1665h6.3 | whole animal | .b | 772 to 1409 | 638 to 1 | fully sequenced, | | 638/638 (100 %) | 21 diff (96.8 %id) |
yk1665h6.5 | whole animal | .b | 1 to 802 | 79 to 881 | tiling clone, fully sequenced, SL1 | | 803/803 (100 %) | 4 diff (99.6 %id) |
yk1690d8.3 | whole animal | .b | 738 to 1594 | 865 to 1 | fully sequenced, | | 865/865 (100 %) | 35 diff (96.0 %id) |
yk1690d8.5 | whole animal | .b | 1 to 768 | 79 to 846 | fully sequenced, SL1 | | 768/768 (100 %) | 6 diff (99.3 %id) |
yk1691d2.3 | whole animal | .b | 886 to 1595 | 713 to 1 | | | 713/877 (81 %) | 21 diff (97.7 %id) |
yk1691d2.5 | whole animal | .b | 1 to 773 | 78 to 850 | SL1 | | 773/773 (100 %) | 2 diff (99.8 %id) |
yk1724d12.3 | whole animal | .b | 886 to 1595 | 710 to 1 | | | 710/817 (86 %) | 13 diff (98.5 %id) |
yk1724d12.5 | whole animal | .b | 1 to 818 | 79 to 901 | SL1 | | 823/832 (98 %) | 14 diff (98.4 %id) |
To mine knowledge about the gene, please click the 'Gene Summary' or the 'Function, regulation, related genes ' tab at the top of the page. The 'Gene Summary' page includes all we learnt about the gene, functional annotations of neighboring genes, maps, links to other sites and the bibliography. The 'Function, regulation, related genes ' page includes Diseases (D), Pathways, GO annotations, conserved domains (C), interactions (I) reference into function, and pointers to all genes with the same functional annotation.
To compare alternative variants, their summarized annotations, predicted proteins, introns and exons, or to access any sequence, click the 'Alternative mRNAs features' tab. To see a specific mRNA variant diagram, sequence and annotation, click the variant name in the 'mRNA' tab. To examine expression data from all cDNAs clustered in this gene by AceView, click the 'Expression tissue'.
If you know more about this gene, or found errors, please share your knowledge. Thank you !