Caenorhabditis elegans gene her-1, HERmaphrodization of XO animals.
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SUMMARY back to top
Summary
[Wormbase] her-1 generates two transcripts, the larger of which encodes a small, secreted, cysteine-rich protein (HER-1A) required for normal sex determination in wild-type XO male animals, while being dispensable for sex determination in XX hermaphrodites; transcription of her-1 in XX animals is repressed by SDC-2; HER-1A protein has two all-helical domains, with fourteen conserved cysteine residues forming seven disulfide bonds, at least eight of which residues are critical for function in vivo; HER-1A has no known homologs except in other nematodes (e.g., Brugia malayi), and does not structurally resemble other well-known secreted proteins; HER-1A inhibits the receptor TRA-2A in vivo, and binds it in vitro; HER-1A functions nonautonomously and requires a signal sequence for biological activity; the her-1(n695gf) mutation alters a site in the her-1 promoter bound by SDC-2, partially transforms XX animals into phenotypic males, and requires sup-26 and sup-27 to do so.
Wormbase predicts 2 models
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AceView summary
According to AceView, this gene is moderately expressed, only 38.0% of the average gene in this release. The sequence of this gene is defined by 5 cDNA clones.
The gene contains 3 distinct gt-ag introns. Transcription produces one mRNA.
The spliced mRNA putatively encodes a good protein, altogether 2 different isoforms (2 COOH complete), some containing Protein of unknown function Her-1 domain [Pfam].
Function: There are 25 articles specifically referring to this gene in PubMed. In addition we point below to 107 abstracts. This gene is associated to a phenotype (HERmaphrodization of XO animals).

Please quote: AceView: a comprehensive cDNA-supported gene and transcripts annotation, Genome Biology 2006, 7(Suppl 1):S12
Map on chromosome CHROMOSOME_V, links to other databases and other names back to top ?
Map: This gene her-1 maps on chomosome V at position +2.03 (interpolated). In AceView, it covers 4.43 kb, from 9697101 to 9701529 (WS190), on the direct strand.
Links to: WormBase, RNAiDB.
Other names: The gene is also known in Wormgenes/AceView by its positional name 5K181, in Wormbase by its cosmid.number name ZK287.8.
Complete gene on genome diagram:               (in true scale, with colored introns) back to top
Compact gene diagram back to top
Legend
Sequences back to top
What is known about the gene and its neighbors on chromosome CHROMOSOME_V back to top
ZOOM IN                D:disease,C:conserved,I:interactions,R:regulation,P:publications         (see the Legend)
Annotated mRNA diagrams back to top
Bibliography back to top
? Gene Summary Gene on genome mRNA Expression Tissue Function and related genes DCI

To mine knowledge about the gene, please click the 'Gene Summary' or the 'Function and related genes' tab at the top of the page. The 'Gene Summary' page includes all we learnt about the gene, functional annotations of neighboring genes, maps, links to other sites and the bibliography. The 'Function and related genes' page includes Diseases (D), Pathways, GO annotations, conserved domains (C), interactions (I) reference into function, and pointers to all genes with the same functional annotation.
To see the mRNA diagram, sequence and annotation, click the 'mRNA' tab. To examine expression data from all cDNAs clustered in this gene by AceView, click the 'Expression tissue'.

If you know more about this gene, or found errors, please share your knowledge. Merci !