Summary
[Wormbase] aap-1 encodes the C. elegans ortholog of the phosphoinositide 3-kinase (PI3K) p50/p55 adaptor/regulatory subunit; AAP-1 negatively regulates lifespan and dauer development, and likely functions as the sole adaptor subunit for the AGE-1/p110 PI3K catalytic subunit to which it binds in vitro; although AAP-1 potentiates insulin-like signaling, it is not absolutely required for insulin-like signaling under most conditions
.
Wormbase predicts one model.
AceView summary
According to AceView, this gene is
well expressed, 1.1 times the average gene in this release, at all stages, mostly from L1 larvae to adult [Kohara cDNAs], the transcript accumulates in the adult gonad and in early embryos [Kohara in situ hybridisations]; the GFP fusion protein is seen at some level in all tissue, especially neurons and intestine; gonad was not tested by the method [Wolkow, 2002]. The gene is transpliced to SL2, and would be second in an operon with gene 1F675, itself encoding a protein conserved among bilateria, possibly a MAPK activating protein. The
sequence of this gene is defined by
14 cDNA clones, some from whole animal (seen 3 times).
The gene contains
4 distinct gt-ag introns. Transcription produces one mRNA. 71 bp of this gene
are antisense to spliced gene 1F678, raising the possibility of regulated alternate expression.
The spliced mRNA putatively encodes
a good protein, containing SH2 motif
[Pfam], a vacuolar domain, a coiled coil stretch
[Psort2].
Function: There are
3 articles specifically referring to this gene in PubMed. In addition we point
below to 3 abstracts. This gene is associated to a
phenotype (constitutive DAuer Formation, long-LIved and Viable after thermal stress, potentiates insulin-like signaling). Proteins are expected to have molecular
function (protein binding activity) and to
localize in nucleus.
Please quote:
AceView: a comprehensive cDNA-supported gene and transcripts annotation, Genome Biology 2006, 7(Suppl 1):S12
Map: This gene aap-1 maps on chomosome I at position -0.38 (interpolated). In AceView, it covers
2.34 kb, from 5107846 to 5110182 (WS190), on the direct strand.
Links to: WormBase,
NextDB,
RNAiDB.
Other names: The gene is also known in Wormgenes/AceView by its positional name 1F677, in Wormbase by its cosmid.number name Y110A7A.10, in NextDB, the Nematode expression pattern database, as CEYK6865.
The closest human gene, according to BlastP, is the AceView gene
PIK3R1 (e=2 10^-31).
The closest mouse gene, according to BlastP, is the AceView gene
Pik3r1 (e=2 10^-31)
Legend
Introns are depicted by broken lines; the height of the top of each intron reflects the relative number of clones supporting this intron.
]^[ A pink broken line denotes an intron with standard boundaries (gt-ag or gc-ag) that is exactly supported (i.e. a cDNA sequence exactly matches the genome over 16 bp, 8 on both sides of the intron).
] ^ ] A blue broken line denotes non-standard introns, exactly supported, but with non-standard at-ac or any other boundaries.
]-[ Pink and
] - ] blue straight lines represent 'fuzzy' introns of the standard and non-standard types respectively, those introns do not follow the 16 bp rule. Black straight lines ]-[denote gaps in the alignments.
Exons: Wide filled pink areas represent putative protein coding regions, narrow empty pink boxes represent the 5'UTR (on the left) and 3' UTR (on the right). Flags identify validated endings: cap site on the 5' side, polyadenylation site on the 3' side. Filled flags correspond to frequent events while empty flags have lesser supporting cDNAs (yet all are validated); at the 3' side, black flags are associated to the main AATAAA signal,
blue flags to any single letter variant of the main . More explanations are given in the
gene help file