Homo sapiens complex locus SNHG12_, encoding small nucleolar RNA host gene 12 (non-protein coding) and small nucleolar RNA, H/ACA box 44 and small nucleolar RNA, H/ACA box 61 and small nucleolar RNA, H/ACA box 16A and small nucleolar RNA, C/D box 99.
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SUMMARY back to top
RefSeq annotates 4 representative transcripts from 5 genes that we see as a complex (NM included in AceView variants .f, .n, .p-u and .q-u), but Homo sapiens cDNA sequences in GenBank, dbEST, Trace and SRA, filtered against clone rearrangements, coaligned on the genome and clustered in a minimal non-redundant way by the manually supervised AceView program, support at least 14 spliced variants.

AceView synopsis, each blue text links to tables and details
Note that this locus merges 5 different NCBI genes, because some GenBank cDNA has significant sequence overlap or common intron boundaries with several gene models.
Expression: According to AceView, this gene is expressed at high level, 1.5 times the average gene in this release. The sequence of this gene is defined by 174 GenBank accessions from 153 cDNA clones, some from lung (seen 13 times), thymus (7), brain (6), pooled germ cell tumors (5), stomach (5), uterus (5), eye (4) and 79 other tissues. We annotate structural defects or features in 6 cDNA clones.
Alternative mRNA variants and regulation: The gene contains 10 distinct gt-ag introns. Transcription produces 17 different mRNAs, 14 alternatively spliced variants and 3 unspliced forms. There are 2 probable alternative promotors, 2 non overlapping alternative last exons and 9 validated alternative polyadenylation sites (see the diagram). The mRNAs appear to differ by truncation of the 5' end, truncation of the 3' end, presence or absence of 2 cassette exons, overlapping exons with different boundaries, splicing versus retention of 9 introns. 848 bp of this gene are antisense to spliced gene TRNAU1AP, raising the possibility of regulated alternate expression.
Function: There are 3 articles specifically referring to this gene in PubMed. No phenotype has yet been reported to our knowledge: this gene's in vivo function is yet unknown.
Protein coding potential: 6 spliced mRNAs putatively encode good proteins, altogether 2 different isoforms (2 complete). The remaining 11 mRNA variants (8 spliced, 3 unspliced; 5 partial) appear not to encode good proteins.

Please quote: AceView: a comprehensive cDNA-supported gene and transcripts annotation, Genome Biology 2006, 7(Suppl 1):S12.
Map on chromosome 1, links to other databases and other names
Map: This gene SNHG12_ maps on chromosome 1, at 1p35.3 according to Entrez Gene. In AceView, it covers 5.09 kb, from 28909644 to 28904557 (NCBI 37, August 2010), on the reverse strand.
Links to: the SNP view, SNP view, SNP view, SNP view, SNP view, gene overviews from Entrez Gene 85028, 692073, 677825, 677838, 692212, GeneCards, expression data from ECgene, UniGene Hs.718565, Hs.725853, Hs.719014, Hs.725855, molecular and other annotations from UCSC, or our GOLD analysis.
The previous AceView annotation is here.
Other names: The gene is also known as SNHG12_, C1orf79, NCRNA00100, RP4-669K10.5, ACA44, ACA61, ACA16, HBII-420, SNHG12, SNORA44, SNORA61, SNORA16A, SNORD99, LOC85028, LOC692073, LOC677825 or LOC677838, LOC692212.
RNA_seq discoveries back to top
Expression/conservation in primates tissues evaluated by cross-mapping to human. back to top
SNHG12_ Gene expression in 15 primates, 16 tissues, from the NHPRTR project in sFPKM BAB SkeletalMuscle WholeBlood CHP Kidney Liver Lung Spleen CMC CMM Cerebellum HUM Brain Colon Heart LymphNode Ovary Testis JMI BoneMarrow MLM OWL PTM RMC RMI Pituitary SQM Thymus MST SMY RTL 0.68 2.05 7.13 3.57 7.13 5.79 12.4 18.8 1.78 1.78 1.35 2.52 1.66 1.91 4.71 1.78 11.6 16.4 2.90 6.65 2.52 1.66 3.10 3.33 0.63 0.83 4.71 3.82 1.78 2.19 3.33 2.52 1.66 2.05 1.26 1.26 0.89 4.10 3.57 2.05 3.82 2.05 2.19 3.33 10.1 8.19 18.8 0.96 1.18 1.18 0.96 1.10 0.96 0.51 3.10 2.35 3.57 8.19 6.65 2.90 43.2 10.1 5.04 20.2 0.96 2.35 2.05 1.91 0.63 0.48 0.27 2.70 3.57 3.33 2.35 3.82 2.05 2.19 1.26 0.63 3.33 3.57 1.26 4.10 2.52 1.18 1.91 1.66 1.55 3.33 1.55 1.26 1.45 2.52 4.71 0.89 8.78 6.21 1.78 1.55 1.91 0.89 1.02 2.70 2.19 6.21 3.33 3.57 1.55 1.91 1.18 5.40 2.90 1.35 0.42 3.82 5.79 2.19 2.19 3.82 1.10 1.66 1.66 1.66 1.55 1.10 5.79 2.35 5.79 3.57 1.91 2.70 3.82 4.39 6.21 0.42 0.32 1.78 1.66 1.26 1.78 1.66 2.90 0.83 8.19 8.78 5.40 2.70 2.70 1.55 6.65 3.82 3.82 1.91 Expression quantiles None Weak 1 2 3 4 5 6 7 8 10 20 This gene All genes log2 distributions RNA-seq gene expression profile across 16 selected tissues from the Non-Human Primates Reference Transcriptome Resource (link to NHPRTR project).
- Primates: Apes (HUM: Human (Illumina BodyMap 2), CHP: Chimpanzee), Old World monkeys (PTM: Pig-Tailed Macaque, JMI Japanese Macaque, RMI Rhesus Macaque Indian, RMC Rhesus Macaque Chinese, CMM Cynomolgus Macaque Mauritian, CMC Cynomolgus Macaque Chinese, BAB Olive Baboon, SMY Sooty Mangabey); New World monkeys (MST common Marmoset, SQM Squirrel Monkey, OWL Owl Monkey); and Lemurs (MLM Mouse Lemur, RTL Ring-Tailed Lemur).
- The level for significantly expressed genes is color coded in 8 equal sized bins (light to dark green). Light gray is for weak not-accurately measured expression (2 to 8 reads above intergenic background); dark gray for no expression or no sequence conservation (0 read in gene). The plot to the right shows the distribution of measured expression values in all tissues for all genes (blue) and for this gene (green), in Magic index = log2(1000 sFPKM).
You may also examine the strand-specific genome coverage plots on the experimental AceView/Magic hub at UCSC, by tissue or by species. Tracks may be slow to load; please reload if some tracks come up yellow-greenish, and thanks to UCSC for the great work!.
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          Complete gene on genome diagram: back to top
Please choose between the zoomable GIF version., and the HTML5/SVG version.
This diagram shows in true scale the gene on the genome, the mRNAs and the cDNA clones.
Compact gene diagram back to top
Gene SNHG12_ 5' 3' encoded on minus strand of chromosome 1 from 28,909,644 to 28,904,557 39046 5052 54431 7831 45055 a 39046 48455 54431 7831 45055 b 54431 29251 45055 c 5052 54431 29251 45055 d 1 48455 54431 29251 45055 e 39046 48455 54431 29251 45055 f 54431 45055 g 39046 29251 45055 h 39046 48455 45055 i 39046 48455 54431 45055 j 39046 5052 54431 45055 k 39046 5052 n l-u 2748 710 29251 45055 m p-u 7831 45055 o q-u 500bp 0 229 bp exon 360 bp [gt-ag] intron 65 GenBank accessions 38981 RNA-seq supporting reads 8542 UHR pooled cells 2070 Brain 1626 Blood 26640 Neuroblastoma 103 Other (also 1662 Primates bodymap) 136 bp exon 447 bp [gt-ag] intron 9 GenBank accessions 5043 RNA-seq supporting reads 1865 UHR pooled cells 256 Brain 188 Blood 2716 Neuroblastoma 18 Other (also 540 Primates bodymap) 87 bp exon 87 bp exon 578 bp [gt-ag] intron 41 GenBank accessions 54390 RNA-seq supporting reads 14670 UHR pooled cells 3394 Brain 2503 Blood 33662 Neuroblastoma 161 Other (also 1876 Primates bodymap) 40 bp exon 354 bp [gt-ag] intron 6 GenBank accessions 7825 RNA-seq supporting reads 2020 UHR pooled cells 469 Brain 314 Blood 5008 Neuroblastoma 14 Other (also 207 Primates bodymap) 55 bp exon 852 bp [gt-ag] intron 54 GenBank accessions 45001 RNA-seq supporting reads 12110 UHR pooled cells 3007 Brain 2671 Blood 27145 Neuroblastoma 68 Other (also 2462 Primates bodymap) 135 bp exon 1 accession from pancreas from purified pancreatic islet 135 bp exon 102 bp exon 360 bp [gt-ag] intron 65 GenBank accessions 38981 RNA-seq supporting reads 8542 UHR pooled cells 2070 Brain 1626 Blood 26640 Neuroblastoma 103 Other (also 1662 Primates bodymap) 119 bp exon 119 bp exon 102 bp uORF 464 bp [gt-ag] intron 36 GenBank accessions 48419 RNA-seq supporting reads 11579 UHR pooled cells 3017 Brain 1971 Blood 31708 Neuroblastoma 144 Other (also 483 Primates bodymap) 87 bp exon 102 bp uORF 87 bp exon 87 bp exon 578 bp [gt-ag] intron 41 GenBank accessions 54390 RNA-seq supporting reads 14670 UHR pooled cells 3394 Brain 2503 Blood 33662 Neuroblastoma 161 Other (also 1876 Primates bodymap) 40 bp exon 40 bp exon 354 bp [gt-ag] intron 6 GenBank accessions 7825 RNA-seq supporting reads 2020 UHR pooled cells 469 Brain 314 Blood 5008 Neuroblastoma 14 Other (also 207 Primates bodymap) 55 bp exon 55 bp exon 852 bp [gt-ag] intron 54 GenBank accessions 45001 RNA-seq supporting reads 12110 UHR pooled cells 3007 Brain 2671 Blood 27145 Neuroblastoma 68 Other (also 2462 Primates bodymap) 143 bp exon 143 bp exon 4 accessions, some from insulinoma (seen 2 times) pancreas (2), 2 pooled tumors (clear cell type) (once) breast (once), kidney (once) Validated 3' end, 2 accessions 143 bp exon 551 bp exon 551 bp exon 578 bp [gt-ag] intron 41 GenBank accessions 54390 RNA-seq supporting reads 14670 UHR pooled cells 3394 Brain 2503 Blood 33662 Neuroblastoma 161 Other (also 1876 Primates bodymap) 70 bp exon 324 bp [gt-ag] intron 30 GenBank accessions 29221 RNA-seq supporting reads 6269 UHR pooled cells 2408 Brain 1560 Blood 18932 Neuroblastoma 52 Other (also 2675 Primates bodymap) 55 bp exon 852 bp [gt-ag] intron 54 GenBank accessions 45001 RNA-seq supporting reads 12110 UHR pooled cells 3007 Brain 2671 Blood 27145 Neuroblastoma 68 Other (also 2462 Primates bodymap) 142 bp exon 2 accessions, some from lung (seen once) primary lung cystic fibrosis epithelialcells (once) Validated 3' end, 2 accessions 142 bp exon 27 bp uORF 2039 bp exon 2039 bp exon 447 bp [gt-ag] intron 9 GenBank accessions 5043 RNA-seq supporting reads 1865 UHR pooled cells 256 Brain 188 Blood 2716 Neuroblastoma 18 Other (also 540 Primates bodymap) 87 bp exon 87 bp exon 87 bp exon 578 bp [gt-ag] intron 41 GenBank accessions 54390 RNA-seq supporting reads 14670 UHR pooled cells 3394 Brain 2503 Blood 33662 Neuroblastoma 161 Other (also 1876 Primates bodymap) 70 bp exon 70 bp exon 324 bp [gt-ag] intron 30 GenBank accessions 29221 RNA-seq supporting reads 6269 UHR pooled cells 2408 Brain 1560 Blood 18932 Neuroblastoma 52 Other (also 2675 Primates bodymap) 55 bp exon 55 bp exon 852 bp [gt-ag] intron 54 GenBank accessions 45001 RNA-seq supporting reads 12110 UHR pooled cells 3007 Brain 2671 Blood 27145 Neuroblastoma 68 Other (also 2462 Primates bodymap) 113 bp exon 113 bp exon 20 accessions, some from brain (seen 2 times) thalamus (2), trachea (2) uterus (2), adipose (once) 113 bp exon 894 bp exon 860 bp [gt-ag] intron 1 GenBank accession (also 1 Primates bodymap) 119 bp exon 464 bp [gt-ag] intron 36 GenBank accessions 48419 RNA-seq supporting reads 11579 UHR pooled cells 3017 Brain 1971 Blood 31708 Neuroblastoma 144 Other (also 483 Primates bodymap) 87 bp exon 87 bp exon 578 bp [gt-ag] intron 41 GenBank accessions 54390 RNA-seq supporting reads 14670 UHR pooled cells 3394 Brain 2503 Blood 33662 Neuroblastoma 161 Other (also 1876 Primates bodymap) 70 bp exon 324 bp [gt-ag] intron 30 GenBank accessions 29221 RNA-seq supporting reads 6269 UHR pooled cells 2408 Brain 1560 Blood 18932 Neuroblastoma 52 Other (also 2675 Primates bodymap) 55 bp exon 852 bp [gt-ag] intron 54 GenBank accessions 45001 RNA-seq supporting reads 12110 UHR pooled cells 3007 Brain 2671 Blood 27145 Neuroblastoma 68 Other (also 2462 Primates bodymap) 113 bp exon 2 accessions, some from colon est (seen once) pancreas, epithelioid carcinoma (once) 113 bp exon 270 bp exon 360 bp [gt-ag] intron 65 GenBank accessions 38981 RNA-seq supporting reads 8542 UHR pooled cells 2070 Brain 1626 Blood 26640 Neuroblastoma 103 Other (also 1662 Primates bodymap) 119 bp exon 464 bp [gt-ag] intron 36 GenBank accessions 48419 RNA-seq supporting reads 11579 UHR pooled cells 3017 Brain 1971 Blood 31708 Neuroblastoma 144 Other (also 483 Primates bodymap) 87 bp exon 87 bp exon 578 bp [gt-ag] intron 41 GenBank accessions 54390 RNA-seq supporting reads 14670 UHR pooled cells 3394 Brain 2503 Blood 33662 Neuroblastoma 161 Other (also 1876 Primates bodymap) 70 bp exon 324 bp [gt-ag] intron 30 GenBank accessions 29221 RNA-seq supporting reads 6269 UHR pooled cells 2408 Brain 1560 Blood 18932 Neuroblastoma 52 Other (also 2675 Primates bodymap) 55 bp exon 852 bp [gt-ag] intron 54 GenBank accessions 45001 RNA-seq supporting reads 12110 UHR pooled cells 3007 Brain 2671 Blood 27145 Neuroblastoma 68 Other (also 2462 Primates bodymap) 143 bp exon 16 accessions, some from lung (seen 5 times) carcinoid (2), alveolar macrophage (once) aorta (once), chondrosarcoma (once) Validated 3' end, 3 accessions 143 bp exon 1315 bp exon 1315 bp exon 578 bp [gt-ag] intron 41 GenBank accessions 54390 RNA-seq supporting reads 14670 UHR pooled cells 3394 Brain 2503 Blood 33662 Neuroblastoma 161 Other (also 1876 Primates bodymap) 449 bp exon 449 bp exon 852 bp [gt-ag] intron 54 GenBank accessions 45001 RNA-seq supporting reads 12110 UHR pooled cells 3007 Brain 2671 Blood 27145 Neuroblastoma 68 Other (also 2462 Primates bodymap) 35 accessions, some from pooled germ cell tumors (seen 4 times) hippocampus (2), retina (2) testis (2), blood (once) capped 5' end, 1 accession Validated 3' end, 1 accession 636 bp exon 286 bp exon 360 bp [gt-ag] intron 65 GenBank accessions 38981 RNA-seq supporting reads 8542 UHR pooled cells 2070 Brain 1626 Blood 26640 Neuroblastoma 103 Other (also 1662 Primates bodymap) 1318 bp exon 324 bp [gt-ag] intron 30 GenBank accessions 29221 RNA-seq supporting reads 6269 UHR pooled cells 2408 Brain 1560 Blood 18932 Neuroblastoma 52 Other (also 2675 Primates bodymap) 55 bp exon 55 bp exon 852 bp [gt-ag] intron 54 GenBank accessions 45001 RNA-seq supporting reads 12110 UHR pooled cells 3007 Brain 2671 Blood 27145 Neuroblastoma 68 Other (also 2462 Primates bodymap) 142 bp exon 30 accessions, some from lung (seen 4 times) thymus (4), brain (2) cerebellum (2), testis (2) capped 5' end, 18 accessions Validated 3' end, 5 accessions 142 bp exon 284 bp exon 360 bp [gt-ag] intron 65 GenBank accessions 38981 RNA-seq supporting reads 8542 UHR pooled cells 2070 Brain 1626 Blood 26640 Neuroblastoma 103 Other (also 1662 Primates bodymap) 119 bp exon 464 bp [gt-ag] intron 36 GenBank accessions 48419 RNA-seq supporting reads 11579 UHR pooled cells 3017 Brain 1971 Blood 31708 Neuroblastoma 144 Other (also 483 Primates bodymap) 1114 bp exon 1114 bp exon 852 bp [gt-ag] intron 54 GenBank accessions 45001 RNA-seq supporting reads 12110 UHR pooled cells 3007 Brain 2671 Blood 27145 Neuroblastoma 68 Other (also 2462 Primates bodymap) 142 bp exon 8 accessions, some from embryonic stem cell retinoic acid andmitogen-treated hes cell line H7 (seen once) embryonic stem cells dmso-treated H9 cellline (once) human embryonic stem cells differentiated toan early endodermal cell type (once) pancreas, spleen, adult pooled (once) placenta cot 25-normalized (once) capped 5' end, 1 accession Validated 3' end, 1 accession 142 bp exon 284 bp exon 360 bp [gt-ag] intron 65 GenBank accessions 38981 RNA-seq supporting reads 8542 UHR pooled cells 2070 Brain 1626 Blood 26640 Neuroblastoma 103 Other (also 1662 Primates bodymap) 119 bp exon 464 bp [gt-ag] intron 36 GenBank accessions 48419 RNA-seq supporting reads 11579 UHR pooled cells 3017 Brain 1971 Blood 31708 Neuroblastoma 144 Other (also 483 Primates bodymap) 87 bp exon 87 bp exon 578 bp [gt-ag] intron 41 GenBank accessions 54390 RNA-seq supporting reads 14670 UHR pooled cells 3394 Brain 2503 Blood 33662 Neuroblastoma 161 Other (also 1876 Primates bodymap) 449 bp exon 449 bp exon 852 bp [gt-ag] intron 54 GenBank accessions 45001 RNA-seq supporting reads 12110 UHR pooled cells 3007 Brain 2671 Blood 27145 Neuroblastoma 68 Other (also 2462 Primates bodymap) 14 accessions, some from liver (seen 2 times) bone marrow (once), cell lines (once) chondrosarcoma (once) CNCAP(3)T-225 cell line (once) Validated 3' end, 3 accessions 142 bp exon 288 bp exon 360 bp [gt-ag] intron 65 GenBank accessions 38981 RNA-seq supporting reads 8542 UHR pooled cells 2070 Brain 1626 Blood 26640 Neuroblastoma 103 Other (also 1662 Primates bodymap) 136 bp exon 447 bp [gt-ag] intron 9 GenBank accessions 5043 RNA-seq supporting reads 1865 UHR pooled cells 256 Brain 188 Blood 2716 Neuroblastoma 18 Other (also 540 Primates bodymap) 87 bp exon 87 bp exon 578 bp [gt-ag] intron 41 GenBank accessions 54390 RNA-seq supporting reads 14670 UHR pooled cells 3394 Brain 2503 Blood 33662 Neuroblastoma 161 Other (also 1876 Primates bodymap) 449 bp exon 449 bp exon 852 bp [gt-ag] intron 54 GenBank accessions 45001 RNA-seq supporting reads 12110 UHR pooled cells 3007 Brain 2671 Blood 27145 Neuroblastoma 68 Other (also 2462 Primates bodymap) 7 accessions, some from brain (seen 2 times) hypothalamus (2), stomach (2) ascites (once), brain hypothalamus (once) 113 bp exon 264 bp exon 264 bp exon 360 bp [gt-ag] intron 65 GenBank accessions 38981 RNA-seq supporting reads 8542 UHR pooled cells 2070 Brain 1626 Blood 26640 Neuroblastoma 103 Other (also 1662 Primates bodymap) 136 bp exon 136 bp exon 447 bp [gt-ag] intron 9 GenBank accessions 5043 RNA-seq supporting reads 1865 UHR pooled cells 256 Brain 188 Blood 2716 Neuroblastoma 18 Other (also 540 Primates bodymap) 7 accessions, some from liver (seen once) pooled lung and spleen (once) 312 bp exon 864 bp exon 864 bp exon 12 accessions, some from fetal pancreas (4 pooled donors 18 - 20weeks, stratagene #738023) (seen 2 times) b-cell, chronic lymphotic leukemia (once) cell lines (once), chondrosarcoma (once) cord blood (once) Validated 3' end, 4 accessions 864 bp exon 264 bp exon 943 bp [gt-ag] intron 1 GenBank accession 2747 RNA-seq supporting reads 312 UHR pooled cells 126 Brain 23 Blood 2281 Neuroblastoma 5 Other (also 252 Primates bodymap) 222 bp exon 443 bp [gt-ag] intron 2 GenBank accessions 708 RNA-seq supporting reads 119 UHR pooled cells 65 Brain 35 Blood 477 Neuroblastoma 12 Other (also 119 Primates bodymap) 70 bp exon 324 bp [gt-ag] intron 30 GenBank accessions 29221 RNA-seq supporting reads 6269 UHR pooled cells 2408 Brain 1560 Blood 18932 Neuroblastoma 52 Other (also 2675 Primates bodymap) 55 bp exon 55 bp exon 852 bp [gt-ag] intron 54 GenBank accessions 45001 RNA-seq supporting reads 12110 UHR pooled cells 3007 Brain 2671 Blood 27145 Neuroblastoma 68 Other (also 2462 Primates bodymap) 142 bp exon 1 accession from eye from optic nerve Validated 3' end, 1 accession 142 bp exon 134 bp exon 134 bp exon 1 accession 134 bp exon 235 bp exon 354 bp [gt-ag] intron 6 GenBank accessions 7825 RNA-seq supporting reads 2020 UHR pooled cells 469 Brain 314 Blood 5008 Neuroblastoma 14 Other (also 207 Primates bodymap) 55 bp exon 55 bp exon 852 bp [gt-ag] intron 54 GenBank accessions 45001 RNA-seq supporting reads 12110 UHR pooled cells 3007 Brain 2671 Blood 27145 Neuroblastoma 68 Other (also 2462 Primates bodymap) 1 accession from colon est 90 bp exon 130 bp exon 130 bp exon 1 accession 130 bp exon Alternative mRNAs are shown aligned from 5' to 3' on a virtual genome where introns have been shrunk to a minimal length. Exon size is proportional to length, intron height reflects the number of cDNAs supporting each intron, the small numbers show the support of the introns in deep sequencing (with details in mouse-over) . Introns of the same color are identical, of different colors are different. 'Good proteins' are pink, partial or not-good proteins are yellow, uORFs are green. 5' cap or3' poly A flags show completeness of the transcript.
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Sequences: click on the numbers to get the DNA back to top
mRNA variant mRNA matching the genome Best predicted protein 5' UTR 3' UTR uORF Upstream sequence Transcription
unit
pre-mRNA
Downstream sequence
aAug10 682 bp 76 aa 424 bp 27 bp 2kb possibly including promoter 3273 bp 1kb
bAug10 546 bp 76 aa 280 bp 35 bp 99 bp 2kb possibly including promoter 3154 bp 1kb
cAug10 818 bp 62 aa 537 bp 92 bp 2kb possibly including promoter 2572 bp 1kb
dAug10 2364 bp 62 aa 2112 bp 63 bp 24 bp 2kb possibly including promoter 4565 bp 1kb
eAug10 1338 bp 62 aa 1086 bp 63 bp 2kb possibly including promoter 4416 bp 1kb
fAug10 744 bp 62 aa 462 bp 93 bp 2kb probably including promoter 3322 bp 1kb
gAug10 2400 bp 84 aa 1301 bp 844 bp 2kb including Promoter 3830 bp 1kb
hAug10 1801 bp 52 aa 1608 bp 34 bp 2kb including Promoter 3337 bp 1kb
iAug10 1659 bp 52 aa 1466 bp 34 bp 2kb including Promoter 3335 bp 1kb
jAug10 1081 bp 84 aa 476 bp 350 bp 2kb probably including promoter 3335 bp 1kb
kAug10 1073 bp 84 aa 497 bp 321 bp 2kb probably including promoter 3310 bp 1kb
lAug10-unspliced 864 bp 39 aa 743 bp 2kb 864 bp 1kb
mAug10 753 bp 52 aa 560 bp 34 bp 2kb probably including promoter 3315 bp 1kb
nAug10 712 bp 47 aa 128 bp 440 bp 2kb probably including promoter 1519 bp 1kb
oAug10 380 bp 47 aa 239 bp 2kb 1586 bp 1kb
pAug10-unspliced 134 bp 34 aa 27 bp 2kb 134 bp 1kb
qAug10-unspliced 130 bp 16 aa 77 bp 2kb 130 bp 1kb

Gene neighbors and Navigator on chromosome 1p35.3 back to top
ATPIF1 D C I R P SESN2 D C I R P MED18 C I R P PHACTR4 C I R P SNHG3_ D C I R P R TRNAU1AP C R P RAB42 C R R RNU11 I P GMEB1 C I R P R YTHDF2 D C I R P OPRD1 D C I P EPB41 D C I R P D C I R P PTAFR C I R P DNAJC8 C R R R G R P SNHG12_ C I R P TAF12 R R P RPL27P4 C 100kb 0 ATPIF1, 480 accessions 6 variants SESN2, 267 accessions 3 variants MED18, 114 accessions 6 variants PHACTR4, 373 accessions 23 variants SNHG3_, 494 accessions 24 variants torama, 3 accessions TRNAU1AP, 193 accessions 15 variants RAB42, 33 accessions, 3 variants ralee, 5 accessions RNU11, 3 accessions GMEB1, 154 accessions 8 variants tubo, 42 accessions YTHDF2, 365 accessions 16 variants OPRD1, 17 accessions EPB41, 503 accessions 23 variants steerybu, 1 accession sterrybu, 1 accession steyrybu, 2 accessions plawworbo, 2 accessions dawmeybo, 1 accession dermeybo, 1 accession swurybu, 2 accessions fameybo, 1 accession dobey, 13 accessions sworybu, 1 accession plorworbo, 1 accession swawrybu, 2 accessions swerrybu, 1 accession sweyrybu, 1 accession skaworbo, 1 accession fumeybo, 1 accession turama, 1 accession skuworbo, 2 accessions fomeybo, 1 accession bawrubu, 1 accession fawmeybo, 1 accession keema, 3 accessions boyrubu, 3 accessions jalubu, 2 accessions skawworbo, 1 accession skerworbo, 2 accessions skorworbo, 2 accessions slaworbo, 1 accession slawworbo, 1 accession slerworbo, 2 accessions sleyworbo, 2 accessions slorworbo, 1 accession leelubu, 2 accessions smaworbo, 1 accession dolubo, 1 accession wake, 4 accessions warero, 2 accessions terama, 1 accession smyworbo, 1 accession ferwabo, 1 accession loylubu, 3 accessions toyleebu, 1 accession smeeworbo, 1 accession smerworbo, 1 accession smeyworbo, 1 accession derlubo, 1 accession vorleebu, 3 accessions solubu, 1 accession feywabo, 1 accession snarworbo, 1 accession wyleebu, 1 accession tolubu, 1 accession woleebu, 1 accession sneeworbo, 1 accession snerworbo, 1 accession forwabo, 2 accessions weeleebu, 1 accession fulubo, 1 accession snorworbo, 3 accessions zaleebu, 2 accessions zuleebu, 3 accessions farlubo, 2 accessions zeeleebu, 1 accession zeyleebu, 6 accessions spuworbo, 5 accessions fawlubo, 1 accession chaleebu, 1 accession tawlubu, 1 accession chyleebu, 1 accession spoworbo, 2 accessions merklor, 2 accessions spawworbo, 2 accessions gylubo, 1 accession speeworbo, 1 accession sperworbo, 1 accession cheeleebu, 1 accession cheyleebu, 2 accessions meerobo, 2 accessions shaleebu, 1 accession merrobo, 1 accession golubo, 2 accessions rakemo, 2 accessions, 2 variants geelubo, 1 accession sharleebu, 1 accession sheeleebu, 1 accession sheyleebu, 2 accessions klulubu, 2 accessions shoyleebu, 1 accession blyleebu, 1 accession rikemo, 2 accessions, 2 variants skawlubu, 1 accession speyworbo, 1 accession sporworbo, 1 accession toybo, 7 accessions jylubo, 1 accession julubo, 1 accession stawrybu, 1 accession fabey, 3 accessions wakemo, 3 accessions, 2 variants domeybo, 1 accession storrybu, 1 accession pleeworbo, 1 accession plerworbo, 1 accession deebey, 1 accession swarybu, 1 accession steylybu, 1 accession deymeybo, 1 accession swyrybu, 1 accession dormeybo, 5 accessions swarrybu, 1 accession sweerybu, 1 accession fymeybo, 1 accession sworrybu, 1 accession siyaro, 2 accessions glowybo, 3 accessions beerubu, 1 accession berrubu, 1 accession fermeybo, 3 accessions glarwybo, 1 accession berlubu, 1 accession skarworbo, 3 accessions skeeworbo, 4 accessions skeyworbo, 1 accession skoyworbo, 1 accession jeelubu, 1 accession sluworbo, 1 accession sloworbo, 1 accession slarworbo, 1 accession sleeworbo, 1 accession kylubu, 1 accession sloyworbo, 1 accession teyleebu, 1 accession smarworbo, 1 accession smawworbo, 1 accession deelubo, 1 accession vyleebu, 2 accessions vuleebu, 1 accession voleebu, 1 accession sterpeybo, 1 accession snaworbo, 1 accession norlubu, 1 accession veyleebu, 1 accession snuworbo, 3 accessions lawrobo, 2 accessions deylubo, 2 accessions sarama, 1 accession lorrobo, 1 accession voyleebu, 1 accession seylubu, 1 accession wuleebu, 1 accession warleebu, 1 accession sneyworbo, 2 accessions mawrobo, 1 accession snoyworbo, 1 accession woyleebu, 1 accession zyleebu, 1 accession spaworbo, 2 accessions zoleebu, 2 accessions zawleebu, 1 accession zerleebu, 1 accession tarbo, 4 accessions meeklor, 2 accessions zoyleebu, 1 accession teelubu, 1 accession sparworbo, 1 accession feylubo, 1 accession choleebu, 1 accession rusluby, 1 accession chawleebu, 1 accession meyklor, 5 accessions cherleebu, 1 accession chorleebu, 2 accessions moyklor, 1 accession gerlubo, 1 accession sherleebu, 1 accession cherlubu, 1 accession meyrobo, 1 accession goylubo, 1 accession blarleebu, 1 accession EYA3, 243 accessions, 15 variants LOC653566, 86 accessions PTAFR, 222 accessions 7 variants DNAJC8, 339 accessions 16 variants dawbey, 13 accessions 2 variants larobo, 1 accession smykoybu, 16 accessions 2 variants LOC100128092, 1 accession SNHG12_, 168 accessions 17 variants TAF12, 239 accessions 10 variants terbo, 8 accessions, 2 variants garlubo, 5 accessions 2 variants RPL27P4, 4 accessions blawleebu, 1 accession ZOOM IN                D:disease,C:conserved,I:interactions,R:regulation,P:publications         Read more...
Annotated mRNA diagrams back to top
Bibliography:               3 articles in PubMed back to top
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l-u, .m, .n, .o, .p-u, .q-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue

To mine knowledge about the gene, please click the 'Gene Summary' or the 'Function, regulation, related genes ' tab at the top of the page. The 'Gene Summary' page includes all we learnt about the gene, functional annotations of neighboring genes, maps, links to other sites and the bibliography. The 'Function, regulation, related genes ' page includes Diseases (D), Pathways, GO annotations, conserved domains (C), interactions (I) reference into function, and pointers to all genes with the same functional annotation.
To compare alternative variants, their summarized annotations, predicted proteins, introns and exons, or to access any sequence, click the 'Alternative mRNAs features' tab. To see a specific mRNA variant diagram, sequence and annotation, click the variant name in the 'mRNA' tab. To examine expression data from all cDNAs clustered in this gene by AceView, click the 'Expression tissue'.

If you know more about this gene, or found errors, please share your knowledge. Thank you !