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Gene ZSWIM1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
98 supporting clones for gene ZSWIM1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC001672 Colon, adenocarcinoma .a 1 to 2168 1 to 2168 exact tiling clone, available from MGC, AAA   2168/2168
(100 %)
1 diff
(100.0 %id)
BC080525 Colon, adenocarcinoma .a 1 to 2168 1 to 2168 exact available from MGC, AAA   2168/2168
(100 %)
1 diff
(100.0 %id)
NM_080603.4   .b 1 to 2786 2 to 2787 exact RefSeq,   2787/2787
(100 %)
0 diff
(100 %id)
DA149957 amygdala .b 1 to 575 2 to 576   tiling clone, capped   575/575
(100 %)
0 diff
(100 %id)
DA488247 brain .b 1 to 550 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
AK291304 tongue .b 12 to 1722 1 to 1707 exact tiling clone,   1707/1707
(100 %)
2 diff
(99.9 %id)
DA761650 tongue .b 13 to 588 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA424778   .b 15 to 584 2 to 571   capped   570/570
(100 %)
3 diff
(99.5 %id)
DA486904 brain .b 18 to 597 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
BP233402 coronary artery .b 18 to 597 1 to 579       579/583
(99 %)
4 diff
(99.4 %id)
BP278139   .b 18 to 599 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP281440 bone marrow .b 18 to 644 1 to 628       628/628
(100 %)
3 diff
(99.6 %id)
BP309707 brain .b 18 to 599 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
DA909406   .b 18 to 594 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
BM149047 leukopheresis .b 18 to 538 1 to 520       520/520
(100 %)
5 diff
(99.1 %id)
DB188637 liver, tumor tissue .b 18 to 588 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DB258951 uterus .b 18 to 580 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA041708 bladder .b 19 to 419 2 to 402   capped   401/401
(100 %)
0 diff
(100 %id)
DA172957 amygdala .b 19 to 571 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
DA173467 amygdala .b 19 to 558 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA257814 caudate nucleus .b 19 to 574 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA305700 hippocampus .b 19 to 577 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA482798   .b 19 to 594 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA644001   .b 19 to 598 2 to 581   capped   580/580
(100 %)
3 diff
(99.5 %id)
DA652517   .b 19 to 520 2 to 503   capped   502/502
(100 %)
1 diff
(99.9 %id)
DA706318   .b 19 to 546 2 to 531   capped   530/530
(100 %)
2 diff
(99.7 %id)
DA815775   .b 19 to 584 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA879073 Prostate .b 19 to 589 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
DA908153   .b 19 to 492 2 to 476   capped   475/475
(100 %)
1 diff
(99.8 %id)
DA929665 small intestine .b 19 to 568 2 to 552   capped   551/551
(100 %)
2 diff
(99.7 %id)
DB012031 esophageal, tumor tissue .b 19 to 582 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA381826 thalamus .b 20 to 590 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA600316   .b 21 to 590 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
BX644615   .b 22 to 597 1 to 576       576/576
(100 %)
1 diff
(99.9 %id)
CD694340 normal nasopharynx .b 23 to 621 21 to 619       599/619
(96 %)
7 diff
(98.9 %id)
BP200815 amygdala .b 26 to 609 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
DA254754 caudate nucleus .b 26 to 591 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA372711 thalamus .b 26 to 572 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
BP215446 corpus callosum .b 26 to 601 1 to 576       576/578
(99 %)
20 diff
(96.6 %id)
DA612726   .b 27 to 623 2 to 598   capped   597/597
(100 %)
1 diff
(99.9 %id)
DA708595   .b 27 to 586 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA819639   .b 27 to 590 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA936514 Spleen .b 27 to 617 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
BP279740   .b 28 to 610 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BG328421 adenocarcinoma cell line, colon .b 31 to 778 1 to 738       738/743
(99 %)
19 diff
(97.5 %id)
DB177443 kidney, tumor tissue .b 31 to 568 8 to 545   capped   538/538
(100 %)
0 diff
(100 %id)
BM792409 Ascites, stomach .b 32 to 663 1 to 632       632/632
(100 %)
2 diff
(99.7 %id)
BU162907 ductal carcinoma, cell line, Pancreas .b 2309 to 2785 1 to 477   tiling clone, AAA   477/477
(100 %)
4 diff
(99.2 %id)
AJ574029 pectoral muscle (after mastectomy) .b 2480 to 2779 10 to 309       300/315
(95 %)
6 diff
(98.1 %id)
BU565347 mixed (pool of 40 RNAs) .b 2486 to 2785 1 to 300   AAA   300/300
(100 %)
2 diff
(99.4 %id)
BY798639 eye .b 2532 to 2786 1 to 255   tiling clone,   255/255
(100 %)
0 diff
(100 %id)
AI826551 normal prostate, Prostate .b 2573 to 2785 213 to 1       213/213
(100 %)
3 diff
(98.6 %id)
AI356165 anaplastic oligodendroglioma, brain .b 2575 to 2780 206 to 1       206/206
(100 %)
0 diff
(100 %id)
AI568593 anaplastic oligodendroglioma, brain .b 2575 to 2780 206 to 1       206/206
(100 %)
0 diff
(100 %id)
AW008653 thymus, pooled .b 2704 to 2778 75 to 1       75/75
(100 %)
0 diff
(100 %id)
BP236262 coronary artery .c 1 to 584 1 to 582       582/582
(100 %)
6 diff
(99.0 %id)
DA770499 brain .c 9 to 513 2 to 506   capped   505/507
(99 %)
1 diff
(99.9 %id)
BP284141 bone marrow .c 11 to 597 1 to 587   tiling clone,   587/587
(100 %)
2 diff
(99.7 %id)
ES311492 frontal balding hair, skin .c 51 to 207 1 to 157       157/157
(100 %)
4 diff
(97.5 %id)
BE304365 adenocarcinoma cell line, colon .c 192 to 766 1 to 574       574/574
(100 %)
2 diff
(99.7 %id)
BM905849 leiomyosarcoma, uterus .c 197 to 1186 32 to 1035       1004/1036
(96 %)
35 diff
(96.7 %id)
BE143908 head_neck .c 286 to 609 8 to 330       323/330
(97 %)
6 diff
(98.2 %id)
BE143962 head_neck .c 286 to 609 8 to 330       323/330
(97 %)
6 diff
(98.2 %id)
BF827723 head_normal .c 327 to 702 14 to 389       376/389
(96 %)
6 diff
(98.5 %id)
CV028259 mixed .c 341 to 952 1 to 612   tiling clone,   612/612
(100 %)
0 diff
(100 %id)
BP203283 coronary artery .c 471 to 989 1 to 519       519/519
(100 %)
2 diff
(99.7 %id)
CV361793 marrow .c 678 to 886 1 to 208       208/211
(98 %)
8 diff
(96.3 %id)
BQ336072 marrow .c 693 to 1167 1 to 471       471/471
(100 %)
9 diff
(98.1 %id)
AW025863 thymus, pooled .c 704 to 1039 436 to 101       336/436
(77 %)
0 diff
(100 %id)
BE159254 head_neck .c 717 to 1205 495 to 4     Submitted on the opposite strand 492/495
(99 %)
0 diff
(100 %id)
BI055373 placenta_normal .c 739 to 1142 403 to 1   tiling clone,   403/403
(100 %)
6 diff
(98.6 %id)
BE064530 breast .c 939 to 1509 1 to 579   tiling clone,   579/579
(100 %)
23 diff
(96.1 %id)
BP199072 brain .c 1047 to 1285 349 to 587   tiling clone,   551/587
(93 %)
12 diff
(98.0 %id)
EC478156 Prostate .c 1056 to 1138 1 to 82       82/91
(90 %)
3 diff
(96.8 %id)
EC537108 Prostate .c 1056 to 1138 1 to 82       82/91
(90 %)
3 diff
(96.8 %id)
EC494072 Prostate .c 1057 to 1138 1 to 82       82/92
(89 %)
2 diff
(97.9 %id)
EC508102 Prostate .c 1057 to 1138 1 to 81       81/91
(89 %)
3 diff
(96.8 %id)
BQ331814 lung_tumor .c 1154 to 1556 10 to 420   tiling clone,   411/420
(97 %)
9 diff
(97.9 %id)
EC465932 Prostate .c 1275 to 1365 91 to 1   tiling clone,   91/92
(98 %)
1 diff
(99.0 %id)
BG982708 colon_normal .c 1332 to 1834 505 to 3   tiling clone,   503/505
(99 %)
0 diff
(100 %id)
BQ332198 lung_tumor .c 1581 to 1752 190 to 19   tiling clone,   172/190
(90 %)
0 diff
(100 %id)
BE549828 pooled germ cell tumors .c 1767 to 1992 226 to 1   tiling clone,   226/226
(100 %)
0 diff
(100 %id)
BQ378840 uterus_tumor .c 1768 to 1943 178 to 2       177/178
(99 %)
0 diff
(100 %id)
FN052363 breast carcinoma .c 1870 to 1929 1 to 60       60/61
(98 %)
2 diff
(96.8 %id)
DN998695 bone marrow .d 1 to 733 1 to 732 H3I P4H H5S tiling clone,   732/735
(99 %)
8 diff
(99.0 %id)
AK026450 ileal mucosa Gene ZSWIM1, variant not shown       available from FLJ, AAA Suspected internal deletion, this clone was ignored    
CR748091 brain, glioblastoma (pooled) Gene ZSWIM1, variant not shown       AAA Suspected internal deletion, internal priming: the 3' end of the oligo dt primed clone lies in the CDS, this clone was ignored    
AA054315 colon, tumor Gene ZSWIM1, variant not shown         This clone was ignored    
AA054414 colon, tumor Gene ZSWIM1, variant not shown         This clone was ignored    
AA743260 germinal center B cell Gene ZSWIM1, variant not shown       AAA This clone was ignored    
AA743429 germinal center B cell Gene ZSWIM1, variant not shown       AAA This clone was ignored    
AA918380 Kidney Gene ZSWIM1, variant not shown         This clone was ignored    
AI150156   Gene ZSWIM1, variant not shown         This clone was ignored    
AI672770 thymus, pooled Gene ZSWIM1, variant not shown         Suspected internal deletion, this clone was ignored    
AW162601 brain, frontal lobe Gene ZSWIM1, variant not shown       AAA This clone was ignored    
BP383124 ilea mucosa Gene ZSWIM1, variant not shown         Suspected internal deletion, this clone was ignored    
DB323708   Gene ZSWIM1, variant not shown         This clone was ignored    
DA701068   Gene ZSWIM1, variant not shown       capped This clone was ignored    
TI_154090078   Gene ZSWIM1, variant not shown       AAA Suspected internal deletion, suspected internal deletion, this clone was ignored    
CA502908 Human Lung Epithelial cells, lung Gene ZSWIM1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C