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Gene ZSCAN22TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
72 supporting clones for gene ZSCAN22 back to top
cDNA accession
Links to the sequence		 Tissue

most 5' clones
in red		 Match
mRNA		 From bp
to bp
in mRNA		 From bp
to bp
in accs.		 Clone encodes
complete protein
(with AA variation)		 Features Anomalies
detected by
AceView		 Accession
match over
(% length)		 Base differences
relative to genome
(% identity)
AA322885 brain, cerebellum .b 3305 to 3549 1 to 245       245/245
(100 %)		 0 diff
(100 %id)
AK128716 uterus .a 1 to 4615 2 to 4618 exact tiling clone, available from FLJ,   4618/4618
(100 %)		 4 diff
(100.0 %id)
AW964654   .b 3306 to 3781 1 to 476       476/476
(100 %)		 5 diff
(99.0 %id)
BC101630 Lung and heart, PCR rescued clones .b 88 to 1672 1 to 1585 exact     1585/1585
(100 %)		 1 diff
(100.0 %id)
BC112277 Lung and heart, PCR rescued clones .b 89 to 1669 1 to 1581 exact tiling clone,   1581/1581
(100 %)		 0 diff
(100 %id)
TI_927043499   .b 81 to 1138 38 to 1088       1051/1227
(85 %)		 21 diff
(98.3 %id)
TI_927043502   .b 81 to 1133 39 to 1079       1041/1178
(88 %)		 27 diff
(97.8 %id)
TI_927044379   .b 1357 to 1678 9 to 329       321/1221
(26 %)		 7 diff
(99.5 %id)
TI_927044380   .b 578 to 1663 7 to 1084       1078/1213
(88 %)		 14 diff
(98.9 %id)
TI_927044381   .b 906 to 1678 1 to 773       773/1168
(66 %)		 9 diff
(99.3 %id)
TI_1242414726   .b 83 to 1245 42 to 1193       1152/1245
(92 %)		 29 diff
(97.7 %id)
TI_1242414730   .b 95 to 1107 58 to 1058       1001/1179
(84 %)		 23 diff
(98.1 %id)
TI_1242414734   .b 549 to 1680 1184 to 58       1127/1238
(91 %)		 0 diff
(100 %id)
TI_1242414738   .b 563 to 1680 1163 to 57       1107/1222
(90 %)		 0 diff
(100 %id)
TI_1242415096   .b 578 to 1663 6 to 1078       1073/1208
(88 %)		 23 diff
(98.1 %id)
TI_1242417754   .b 83 to 1018 944 to 9       936/1255
(74 %)		 3 diff
(99.8 %id)
TI_1242418630   .b 83 to 1163 47 to 1120       1074/1134
(94 %)		 22 diff
(98.1 %id)
TI_1242419014   .b 563 to 1680 1178 to 63       1116/1178
(94 %)		 0 diff
(100 %id)
TI_2194575945   .c 71 to 1052 55 to 1031       977/1163
(84 %)		 18 diff
(98.5 %id)
TI_2194575946   .c 71 to 1090 51 to 1061       1011/1205
(83 %)		 19 diff
(98.5 %id)
TI_2194575947   .b 548 to 1672 1188 to 69       1120/1227
(91 %)		 0 diff
(100 %id)
TI_2194575948   .b 604 to 1672 1124 to 68       1057/1217
(86 %)		 0 diff
(100 %id)
TI_2194576137   .c 71 to 1253 56 to 1235 A60S R288K P289T H290P M291Y ...     1180/1295
(91 %)		 27 diff
(98.0 %id)
TI_2194576518   .b 858 to 1672 886 to 70       817/886
(92 %)		 0 diff
(100 %id)
TI_2194577750   .b 1348 to 1672 1 to 325       325/1233
(26 %)		 6 diff
(99.6 %id)
TI_2194577751   .b 583 to 1663 10 to 1082       1073/1191
(90 %)		 13 diff
(99.0 %id)
TI_2194577752   .b 909 to 1672 15 to 777       763/1196
(63 %)		 4 diff
(99.7 %id)
BF743736 breast .b 4007 to 4177 1 to 171       171/172
(99 %)		 9 diff
(94.8 %id)
AV757944 bone marrow .b 4086 to 4630 68 to 613   AAA   546/552
(98 %)		 0 diff
(100 %id)
DA335630 hippocampus .c 1 to 590 2 to 591   tiling clone, capped   590/590
(100 %)		 0 diff
(100 %id)
DA409234 thalamus .c 18 to 585 2 to 569   capped   568/568
(100 %)		 0 diff
(100 %id)
BX107842 pooled germ cell tumors .b 2439 to 2658 1 to 220   AAA   220/220
(100 %)		 2 diff
(99.1 %id)
BX537741 human fetal kidney .b 1 to 4626 1 to 4630 exact tiling clone, available from DKFZ, AAA   4630/4630
(100 %)		 4 diff
(100.0 %id)
BX647879 bone marrow .b 1663 to 4626 1 to 2964   tiling clone, available from DKFZ, AAA   2964/2964
(100 %)		 1 diff
(100.0 %id)
CN281071 embryonic stem cells, cell lines H1, H7, andH9 .b 1786 to 2493 710 to 1     Submitted on the opposite strand 710/710
(100 %)		 2 diff
(99.8 %id)
CN295105 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 3993 to 4354 1 to 362       362/362
(100 %)		 2 diff
(99.5 %id)
CR735655 choriocarcinoma, placenta .b 46 to 550 38 to 542       505/542
(93 %)		 6 diff
(98.9 %id)
BX503590   .b 1663 to 2289 1 to 627       627/627
(100 %)		 1 diff
(99.9 %id)
BX503591   .b 4163 to 4626 529 to 66   AAA   464/464
(100 %)		 5 diff
(99.0 %id)
R28786   .b 3728 to 3923 1 to 194       194/194
(100 %)		 9 diff
(95.4 %id)
T67012 liver and spleen .b 4349 to 4640 298 to 5       294/441
(66 %)		 0 diff
(100 %id)
T67013 liver and spleen .b 3914 to 4286 1 to 374       374/379
(98 %)		 9 diff
(97.7 %id)
H89280 cochlea, ear .b 4412 to 4624 1 to 214       214/214
(100 %)		 2 diff
(99.1 %id)
AA235678 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3432 to 3879 1 to 448       448/448
(100 %)		 0 diff
(100 %id)
AA236893 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 4370 to 4626 267 to 11   AAA   257/260
(98 %)		 0 diff
(100 %id)
AA486825 lung .b 3549 to 4011 1 to 463       463/463
(100 %)		 2 diff
(99.6 %id)
AA936133 pooled germ cell tumors .b 2472 to 2657 224 to 39   AAA   186/186
(100 %)		 2 diff
(99.0 %id)
AI419323 brain, glioblastoma (pooled) .b 4273 to 4623 351 to 1       351/351
(100 %)		 0 diff
(100 %id)
AI421942 brain, glioblastoma (pooled) .b 4273 to 4623 351 to 1       351/351
(100 %)		 1 diff
(99.8 %id)
AI695987 pooled germ cell tumors .b 4351 to 4643 293 to 1       293/293
(100 %)		 0 diff
(100 %id)
AI631670 pooled germ cell tumors .b 2472 to 2659 224 to 37   AAA   188/188
(100 %)		 11 diff
(94.2 %id)
AI864104 pooled .b 4371 to 4625 255 to 1       255/255
(100 %)		 0 diff
(100 %id)
AI951475 breast, four pooled high-grade tumors, including twoprimary tumors and two metastatic to ovary .b 4164 to 4307 144 to 1       144/144
(100 %)		 2 diff
(98.7 %id)
CB054574 brain, glioblastoma (pooled) .b 4276 to 4626 374 to 24   fully sequenced, AAA   351/351
(100 %)		 0 diff
(100 %id)
CB054575 brain, glioblastoma (pooled) .b 4231 to 4626 1 to 396   fully sequenced, AAA   396/396
(100 %)		 5 diff
(98.8 %id)
CB054596 brain, glioblastoma (pooled) .b 4276 to 4626 374 to 24   fully sequenced, AAA   351/351
(100 %)		 0 diff
(100 %id)
CB054597 brain, glioblastoma (pooled) .b 4231 to 4628 1 to 398   fully sequenced, AAA   398/398
(100 %)		 5 diff
(98.8 %id)
BE856964 pooled .b 4121 to 4628 508 to 1       508/508
(100 %)		 1 diff
(99.9 %id)
BE785271 large cell carcinoma, lung .b 3926 to 4629 1 to 699       699/944
(74 %)		 22 diff
(97.7 %id)
BE792666 lung, small cell carcinoma .b 886 to 1657 1 to 766       766/766
(100 %)		 7 diff
(99.1 %id)
BE794668 lung, small cell carcinoma .b 3864 to 4625 1 to 759   AAA   759/759
(100 %)		 7 diff
(99.1 %id)
BE903090 choriocarcinoma, placenta .b 66 to 876 1 to 815       815/893
(91 %)		 17 diff
(98.1 %id)
BG576086 breast, mammary adenocarcinoma, cell line .b 3427 to 4358 6 to 943       938/951
(98 %)		 33 diff
(96.6 %id)
BG697672 skin .b 3576 to 4376 1 to 802       802/802
(100 %)		 3 diff
(99.7 %id)
BG722536 testis .b 828 to 1568 1 to 745       745/787
(94 %)		 27 diff
(96.6 %id)
BI871070 adenocarcinoma, cell line, Liver .b 4214 to 4626 1 to 413   AAA   413/413
(100 %)		 0 diff
(100 %id)
BU163794 epidermoid carcinoma, cell line, salivary gland .b 3213 to 3940 1 to 741       741/959
(77 %)		 29 diff
(97.0 %id)
BQ212012 melanotic melanoma, skin .b 2286 to 3011 1 to 733       733/802
(91 %)		 27 diff
(96.7 %id)
BQ883485 Spleen .b 3218 to 4129 914 to 1     Submitted on the opposite strand 914/914
(100 %)		 11 diff
(98.8 %id)
BC143446 Lung and heart, PCR rescued clones .c 71 to 1632 8 to 1569 A60S tiling clone,   1562/1569
(99 %)		 6 diff
(99.7 %id)
CF995391 Pooled Chondrosarcoma Tumor cells .b 3833 to 4405 8 to 587       580/987
(58 %)		 6 diff
(99.4 %id)
TI_57229666   .b 4213 to 4626 85 to 498   AAA   414/414
(100 %)		 0 diff
(100 %id)
CB139187 Liver .b 3341 to 3808 1 to 468       468/468
(100 %)		 0 diff
(100 %id)
NM_181846.2   .b 1 to 4643 1 to 4643 exact RefSeq,   4643/4643
(100 %)		 0 diff
(100 %id)
BM828306 Ascites, stomach .b 3870 to 4502 1 to 633       633/633
(100 %)		 0 diff
(100 %id)
BM669173 eye, fetal eyes .b 4294 to 4631 357 to 19   fully sequenced, AAA   339/339
(100 %)		 0 diff
(100 %id)
BM693588 eye, fetal eyes .b 3911 to 4324 1 to 414   fully sequenced,   414/414
(100 %)		 0 diff
(100 %id)
DB287203 uterus .a 1 to 538 2 to 539   capped   538/538
(100 %)		 0 diff
(100 %id)
DB352843 uterus .a 4326 to 4612 290 to 4       287/292
(98 %)		 0 diff
(100 %id)
BG576086 breast, mammary adenocarcinoma, cell line .b 3427 to 4358 6 to 943       938/951
(98 %)		 33 diff
(96.6 %id)
BG697672 skin .b 3576 to 4376 1 to 802       802/802
(100 %)		 3 diff
(99.7 %id)
BG722536 IMAGE:4826400 ZSCAN22.bAug10 1568 745 IMAGE:4826400     745 27
BI871070 IMAGE:5404042 ZSCAN22.bAug10 4626 413 IMAGE:5404042     413 0
BI871070 IMAGE:5404042 ZSCAN22.bAug10 4626 413 IMAGE:5404042     413 0
BU163794 IMAGE:6086816 ZSCAN22.bAug10 3940 741 IMAGE:6086816     741 29
BU163794 IMAGE:6086816 ZSCAN22.bAug10 3940 741 IMAGE:6086816     741 29
BQ212012 IMAGE:6095516 ZSCAN22.bAug10 3011 733 IMAGE:6095516     733 27
BQ212012 IMAGE:6095516 ZSCAN22.bAug10 3011 733 IMAGE:6095516     733 27
BQ883485 IMAGE:6302264 ZSCAN22.bAug10 4129 1 IMAGE:6302264 Inverted   914 11
BC143446 IMAGE:9051954 ZSCAN22.cAug10 1632 1569 IMAGE:9051954     1562 6
CF995391 IMAGE:30524468 ZSCAN22.bAug10 4405 587 IMAGE:30524468     580 6
TI_57229666 INCYTE_603394243 ZSCAN22.bAug10 4626 498 INCYTE_603394243     414 0
CB139187 L6ChoCK0-30-D07 ZSCAN22.bAug10 3808 468 L6ChoCK0-30-D07     468 0
NM_181846.2 NM_181846 ZSCAN22.bAug10 4643 4643 NM_181846     4643 0
BM828306 S22SNU16n1-111-C10 ZSCAN22.bAug10 4502 633 S22SNU16n1-111-C10     633 0
BM828306 S22SNU16n1-111-C10 ZSCAN22.bAug10 4502 633 S22SNU16n1-111-C10     633 0
BM669173 UI-E-DX1-agy-d-14-0-UI ZSCAN22.bAug10 4631 19 UI-E-DX1-agy-d-14-0-UI     339 0
BM669173 UI-E-DX1-agy-d-14-0-UI ZSCAN22.bAug10 4631 19 UI-E-DX1-agy-d-14-0-UI     339 0
BM693588 UI-E-DX1-agy-d-14-0-UI ZSCAN22.bAug10 4324 414 UI-E-DX1-agy-d-14-0-UI     414 0
BM693588 UI-E-DX1-agy-d-14-0-UI ZSCAN22.bAug10 4324 414 UI-E-DX1-agy-d-14-0-UI     414 0
DB287203 UTERU3016070 ZSCAN22.aAug10 538 539 UTERU3016070     538 0
DB352843 UTERU3016070 ZSCAN22.aAug10 4612 4 UTERU3016070     287 0
? Gene Summary Gene on genome mRNA:.a, .b, .c Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C