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Gene ZNF565TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
70 supporting clones for gene ZNF565 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA757027   .a-u 1 to 420 2 to 421   tiling clone, to resequence, capped   420/420
(100 %)
0 diff
(100 %id)
AA375617 lung .a-u 1255 to 1575 1 to 324   tiling clone,   324/324
(100 %)
4 diff
(98.8 %id)
AW957690   .a-u 1256 to 1893 1 to 639   tiling clone,   639/639
(100 %)
3 diff
(99.6 %id)
AW367524 head_neck .a-u 1484 to 2061 1 to 576   tiling clone,   576/576
(100 %)
6 diff
(99.0 %id)
BX091997 liver and spleen .a-u 1589 to 2330 1 to 741   tiling clone,   741/741
(100 %)
1 diff
(99.9 %id)
R09602 liver and spleen .a-u 1590 to 1964 1 to 384       384/390
(98 %)
14 diff
(96.5 %id)
H65544 liver and spleen .a-u 1590 to 1878 1 to 291       291/291
(100 %)
2 diff
(99.4 %id)
CA396857 eye, RPE/choroid .a-u 1674 to 2325 1 to 652       652/652
(100 %)
0 diff
(100 %id)
CA306561 Alveolar Macrophage, lung .a-u 1846 to 2629 800 to 19   AAA   782/782
(100 %)
2 diff
(99.8 %id)
BE466825 pooled germ cell tumors .a-u 1967 to 2621 655 to 1       655/655
(100 %)
6 diff
(99.1 %id)
AI022739 liver and spleen .a-u 2009 to 2621 613 to 1       613/613
(100 %)
7 diff
(98.9 %id)
AW051368 pooled .a-u 2027 to 2621 599 to 5       595/599
(99 %)
0 diff
(100 %id)
BM127970 Islets of Langerhans, Pancreas .a-u 2036 to 2618 586 to 4       583/595
(97 %)
0 diff
(100 %id)
CK819275 Islets of Langerhans, Pancreas .a-u 2036 to 2618 586 to 4       583/586
(99 %)
0 diff
(100 %id)
BF064261 pooled .a-u 2111 to 2621 515 to 5       511/515
(99 %)
0 diff
(100 %id)
DB325225   .a-u 2121 to 2664 545 to 1   to resequence,   545/545
(100 %)
1 diff
(99.9 %id)
AI032079 liver and spleen .a-u 2123 to 2621 499 to 1       499/499
(100 %)
3 diff
(99.4 %id)
AW631211 pooled .a-u 2123 to 2621 505 to 7       499/505
(98 %)
0 diff
(100 %id)
BE218546 carcinoid, lung .a-u 2130 to 2630 503 to 3       501/504
(99 %)
0 diff
(100 %id)
AA973170 pooled germ cell tumors .a-u 2183 to 2621 439 to 1       439/439
(100 %)
2 diff
(99.6 %id)
BM313015 Pancreas, Purified pancreatic islet .a-u 2203 to 2712 1 to 510   tiling clone, Submitted on the opposite strand 510/510
(100 %)
1 diff
(99.9 %id)
AI680830 carcinoid, lung .a-u 2211 to 2630 422 to 3       420/422
(99 %)
0 diff
(100 %id)
H65342 liver and spleen .a-u 2323 to 2616 298 to 1       298/298
(100 %)
7 diff
(97.7 %id)
R09497 liver and spleen .a-u 2357 to 2619 264 to 1       264/307
(85 %)
1 diff
(99.7 %id)
BF508256   .a-u 2409 to 2629 238 to 18   AAA   221/221
(100 %)
4 diff
(98.2 %id)
FN131393 breast carcinoma .a-u 2427 to 2534 1 to 110       110/111
(99 %)
4 diff
(96.4 %id)
AK057290 testis .b 1 to 2518 2 to 2521 exact tiling clone, available from FLJ,   2521/2521
(100 %)
5 diff
(99.9 %id)
DB020749 testis .b 1 to 550 2 to 553   capped   552/552
(100 %)
3 diff
(99.5 %id)
BI827546 brain, medulla .b 780 to 1615 12 to 858       853/858
(99 %)
26 diff
(97.0 %id)
TI_57172030   .b 780 to 1615 40 to 886       848/886
(95 %)
26 diff
(97.1 %id)
BM835134 stomach .b 780 to 1099 33 to 351       319/351
(90 %)
7 diff
(98.1 %id)
AA353953   .b 781 to 1171 1 to 394       394/394
(100 %)
3 diff
(99.3 %id)
CD691406 normal nasopharynx .b 803 to 1283 1 to 481       481/481
(100 %)
6 diff
(98.8 %id)
BF839809 head_neck .b 966 to 1442 7 to 482       476/484
(98 %)
7 diff
(98.6 %id)
DB335852 testis .b 2007 to 2518 514 to 1       514/514
(100 %)
3 diff
(99.5 %id)
DA473136   .c 1 to 541 2 to 542   tiling clone, capped   541/541
(100 %)
1 diff
(99.9 %id)
DB030975 testis .c 5 to 581 2 to 578   capped   577/577
(100 %)
3 diff
(99.5 %id)
DB473200.
matches multiple genes
hippocampus .c 7 to 480 1 to 474     also hits gene vysey 474/474
(100 %)
1 diff
(99.8 %id)
DA425245 colon .c 9 to 566 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA502928 brain .c 9 to 576 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
NM_152477.3   .c 9 to 1803 1 to 1795 exact RefSeq,   1795/1796
(99 %)
5 diff
(99.8 %id)
DB059041 testis .c 9 to 551 2 to 545   capped   544/544
(100 %)
2 diff
(99.7 %id)
BG432401 Kidney .c 12 to 375 1 to 363       363/367
(98 %)
3 diff
(99.2 %id)
DA397916 thalamus .c 13 to 559 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA985008 synovial membrane tissue from rheumatioidarthritis .c 13 to 563 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
CB960081 Human Placenta, placenta .c 18 to 744 28 to 761   tiling clone,   734/800
(91 %)
9 diff
(98.9 %id)
CB961145 Human Placenta, placenta .c 18 to 665 28 to 692       665/844
(78 %)
28 diff
(96.7 %id)
CB959667 Human Placenta, placenta .c 18 to 732 28 to 749   tiling clone,   722/770
(93 %)
8 diff
(99.0 %id)
DA486322 brain .c 19 to 581 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB022095 testis .c 29 to 587 2 to 563   capped   562/562
(100 %)
3 diff
(99.5 %id)
DB266753 uterus .c 29 to 604 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
NM_001042474.1   .d 1 to 1945 5 to 1949 exact RefSeq,   1949/1950
(99 %)
5 diff
(99.8 %id)
DA376794 thalamus .d 1 to 551 5 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA766324 tongue .d 1 to 567 5 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB041884 testis .d 1 to 553 5 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
AK094310 cerebellum .d 1 to 1930 2 to 1931 exact tiling clone, available from FLJ,   1931/1931
(100 %)
0 diff
(100 %id)
DA058967 cerebellum .d 1 to 564 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
BF839811 head_neck .d 381 to 849 11 to 479       469/479
(97 %)
3 diff
(99.4 %id)
AA448909   .d 447 to 793 1 to 347       347/347
(100 %)
0 diff
(100 %id)
AA476586   .d 1366 to 1939 581 to 8   tiling clone,   574/581
(98 %)
0 diff
(100 %id)
DB296830 cerebellum .d 1388 to 1930 544 to 1       544/544
(100 %)
1 diff
(99.9 %id)
DC398222 testis .e 1 to 556 1 to 556   tiling clone,   556/556
(100 %)
1 diff
(99.9 %id)
CD251687 brain, Pituitary .e 204 to 1042 1 to 841   tiling clone,   841/841
(100 %)
2 diff
(99.8 %id)
BP310519 brain .e 205 to 792 1 to 588       588/588
(100 %)
0 diff
(100 %id)
AK308212 small intestine .e 209 to 1217 1 to 1008 F191L G192D C193V K194R E195N ... tiling clone,   1008/1008
(100 %)
1 diff
(100.0 %id)
DC388416 small intestine .e 209 to 778 1 to 570       570/570
(100 %)
0 diff
(100 %id)
CK819276 Islets of Langerhans, Pancreas .f 1 to 611 1 to 611 Q167P R169K H179P A184T H198L ... tiling clone,   611/612
(99 %)
10 diff
(98.4 %id)
BM128300 Islets of Langerhans, Pancreas .f 17 to 603 1 to 587   tiling clone,   587/587
(100 %)
2 diff
(99.7 %id)
AX721158   .g 1 to 455 20 to 473 L2P tiling clone,   454/473
(95 %)
2 diff
(99.6 %id)
DR002003 fetal brain .g 20 to 534 1 to 514   tiling clone,   514/514
(100 %)
5 diff
(99.1 %id)
DA380262 thalamus .h 1 to 531 6 to 534   tiling clone, capped   533/533
(100 %)
2 diff
(99.7 %id)
CB140668 Liver .h 198 to 541 1 to 346 A43G S44L L45T G46R L47T ... tiling clone,   346/350
(98 %)
6 diff
(98.3 %id)
DB042217 testis .i 1 to 582 2 to 584 exact tiling clone, capped   583/583
(100 %)
3 diff
(99.5 %id)
DA875231 Prostate .j 1 to 565 2 to 566 Y82C tiling clone, capped   565/565
(100 %)
3 diff
(99.5 %id)
BC068453.
matches multiple genes
Placenta, normal Gene ZNF565, variant not shown       available from MGC, AAA This clone was ignored, also hits gene flaler    
BC068453.
matches multiple genes
Placenta, normal Gene flaler, variant not shown       available from MGC, AAA This clone was ignored, also hits gene flaler    
DB445987.
matches multiple genes
testis Gene vysey, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene vysey    
DB445987.
matches multiple genes
testis Gene ZNF565, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene vysey    
DB511038.
matches multiple genes
testis Gene vysey, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene vysey    
DB511038.
matches multiple genes
testis Gene ZNF565, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene vysey    
? Gene Summary Gene on genome mRNA:.a-u, .b, .c, .d, .e, .f, .g, .h, .i, .j Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C