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Gene ZNF557TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
77 supporting clones for gene ZNF557 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK315405 colon .a 1 to 1628 1 to 1629       1629/1630
(99 %)
3 diff
(99.9 %id)
DC345069 colon .a 1 to 561 1 to 562       562/562
(100 %)
1 diff
(99.9 %id)
DC391693 Spleen .a 1 to 541 1 to 541   tiling clone,   541/541
(100 %)
0 diff
(100 %id)
NM_024341.2   .a 17 to 6018 1 to 6002 exact RefSeq,   6002/6002
(100 %)
0 diff
(100 %id)
CD723600 eye, lacrimal gland .a 17 to 605 1 to 589       589/589
(100 %)
0 diff
(100 %id)
CD723611 eye, lacrimal gland .a 17 to 605 1 to 589       589/589
(100 %)
0 diff
(100 %id)
DC376109 brain .a 236 to 730 1 to 495       495/495
(100 %)
1 diff
(99.8 %id)
AK297283 brain .a 260 to 2268 1 to 2009 T126A I339L tiling clone,   2009/2009
(100 %)
6 diff
(99.8 %id)
DC308788 cerebellum .a 260 to 822 1 to 563       563/563
(100 %)
0 diff
(100 %id)
DC350729 brain .a 260 to 827 1 to 568       568/568
(100 %)
1 diff
(99.9 %id)
DA327563 hippocampus .a 266 to 824 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
BC003020 Lung, small cell carcinoma .a 267 to 1628 1 to 1362   tiling clone, available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1362/1388
(98 %)
1 diff
(100.0 %id)
AW245507 lung, small cell carcinoma .a 267 to 818 10 to 561     Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 552/561
(98 %)
7 diff
(98.8 %id)
BC058040 Pooled, 40 cell lines .a 292 to 1625 5 to 1338   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1334/1362
(97 %)
1 diff
(100.0 %id)
AW245951 lung, small cell carcinoma .a 1157 to 1628 481 to 10   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 472/481
(98 %)
0 diff
(100 %id)
DA102744 cerebellum .b 1 to 453 2 to 455   tiling clone, capped   454/454
(100 %)
4 diff
(99.2 %id)
NM_001044387.1   .b 20 to 6009 1 to 5990 exact RefSeq,   5990/5990
(100 %)
0 diff
(100 %id)
DA769680 brain .b 247 to 831 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
BC031208 Brain, hypothalamus .b 251 to 1698 1 to 1448   tiling clone, available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1448/1456
(99 %)
5 diff
(99.7 %id)
CD694100 normal nasopharynx .b 257 to 879 38 to 660   tiling clone,   623/660
(94 %)
7 diff
(99.0 %id)
BP195882 brain .b 268 to 850 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BX352831 Neuroblastoma Cot 10-normalized .b 411 to 1272 1 to 852       852/854
(99 %)
25 diff
(97.1 %id)
CV026031 mixed .b 493 to 1123 1 to 630       630/632
(99 %)
2 diff
(99.7 %id)
TI_1948123446   .b 493 to 866 139 to 512   fully sequenced,   374/512
(73 %)
6 diff
(98.9 %id)
TI_1948123621   .b 493 to 1165 130 to 808   fully sequenced,   679/808
(84 %)
7 diff
(99.2 %id)
TI_1948123784   .b 493 to 1179 126 to 826   fully sequenced,   701/826
(84 %)
10 diff
(98.8 %id)
TI_1948123953   .b 493 to 1191 129 to 829   fully sequenced,   701/829
(84 %)
11 diff
(98.7 %id)
TI_1948123447   .b 805 to 1617 941 to 126   fully sequenced,   816/941
(86 %)
3 diff
(99.7 %id)
TI_1948123622   .b 1135 to 1624 609 to 120   tiling clone, fully sequenced,   490/609
(80 %)
5 diff
(99.2 %id)
TI_1948123785   .b 1149 to 1624 595 to 120   fully sequenced,   476/595
(80 %)
5 diff
(99.2 %id)
TI_1948123954   .b 1161 to 1624 584 to 121   fully sequenced,   464/584
(79 %)
5 diff
(99.2 %id)
NM_001044388.1   .c 1 to 5981 1 to 5981 exact RefSeq,   5981/5981
(100 %)
0 diff
(100 %id)
FN134705 breast carcinoma .c 234 to 306 1 to 74   tiling clone,   74/74
(100 %)
3 diff
(96.0 %id)
AA375441 lung .c 239 to 565 1 to 329       329/329
(100 %)
9 diff
(97.3 %id)
AK095524 brain .c 246 to 2909 1 to 2662 V24L N25M E26S L27S L28* tiling clone, available from FLJ,   2662/2662
(100 %)
11 diff
(99.6 %id)
DA483362 brain .c 247 to 1032 2 to 790   capped   789/789
(100 %)
6 diff
(99.3 %id)
DA933565 Spleen .c 247 to 794 2 to 549   tiling clone, capped   548/548
(100 %)
1 diff
(99.9 %id)
N88774   .c 904 to 1190 1 to 287       287/287
(100 %)
16 diff
(94.5 %id)
N86543   .c 916 to 1203 1 to 288       288/289
(99 %)
7 diff
(97.6 %id)
BX390110 Neuroblastoma Cot 10-normalized .c 952 to 1825 24 to 903       880/903
(97 %)
5 diff
(99.5 %id)
BU632063 cell lines, Chondrosarcoma .c 973 to 1586 627 to 14   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 614/627
(97 %)
0 diff
(100 %id)
EC462278 Prostate .c 1019 to 1110 6 to 96       91/101
(90 %)
4 diff
(96.1 %id)
BF374254 stomach_normal .c 1070 to 1243 1 to 174       174/211
(82 %)
7 diff
(96.7 %id)
EC518961 Prostate .c 1129 to 1226 1 to 98       98/98
(100 %)
0 diff
(100 %id)
EC504111 Prostate .c 1153 to 1258 1 to 104       104/104
(100 %)
3 diff
(97.2 %id)
BX281171 brain, hypothalamus .c 1243 to 1670 448 to 21     Submitted on the opposite strand 428/448
(95 %)
0 diff
(100 %id)
BM144817 leukopheresis .c 1383 to 1821 458 to 20   AAA   439/439
(100 %)
3 diff
(99.4 %id)
AW411462 muscle, rhabdomyosarcoma .c 1550 to 2074 1 to 526     Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 526/526
(100 %)
6 diff
(98.9 %id)
AI694346 pooled .c 1592 to 1843 1 to 252     Submitted on the opposite strand 252/252
(100 %)
6 diff
(97.7 %id)
AW665528 pooled .c 1596 to 2043 1 to 448     Submitted on the opposite strand 448/448
(100 %)
6 diff
(98.7 %id)
AI085072 liver and spleen .c 1597 to 1853 1 to 257   tiling clone, Submitted on the opposite strand 257/257
(100 %)
0 diff
(100 %id)
BX100901 2 pooled tumors (clear cell type), Kidney .c 1890 to 2390 501 to 1     Submitted on the opposite strand 501/501
(100 %)
1 diff
(99.9 %id)
AW086192 ovary, papillary serous carcinoma .c 2181 to 2639 14 to 474   tiling clone, Submitted on the opposite strand 461/474
(97 %)
6 diff
(98.8 %id)
DB315013 brain .c 2357 to 2909 552 to 1       552/552
(100 %)
5 diff
(99.1 %id)
R09515 liver and spleen .c 2396 to 2689 1 to 302   tiling clone, Submitted on the opposite strand 302/328
(92 %)
11 diff
(96.7 %id)
AA281299 germinal center B cell .c 2456 to 2787 332 to 1       332/377
(88 %)
1 diff
(99.8 %id)
BE090061 breast .c 2503 to 2925 447 to 24   tiling clone, Submitted on the opposite strand 424/447
(94 %)
0 diff
(100 %id)
AA737172 germinal center B cell .c 2526 to 2796 271 to 1       271/271
(100 %)
1 diff
(99.7 %id)
EH320799   .c 2655 to 2717 1 to 63       63/63
(100 %)
0 diff
(100 %id)
DR977596 brain .c 2655 to 2796 1 to 141     Submitted on the opposite strand 141/142
(99 %)
5 diff
(96.5 %id)
BF903538 marrow .c 2773 to 2880 115 to 9     Submitted on the opposite strand 107/115
(93 %)
0 diff
(100 %id)
R09627 liver and spleen .c 2815 to 3214 409 to 1   tiling clone, Submitted on the opposite strand 409/418
(97 %)
11 diff
(97.4 %id)
BF360895 ovary .c 3475 to 3663 190 to 6   tiling clone,   185/203
(91 %)
0 diff
(100 %id)
FN088421 breast carcinoma .c 3536 to 3640 1 to 104   tiling clone,   104/104
(100 %)
2 diff
(98.1 %id)
BF885614 testis_normal .c 5012 to 5182 174 to 3   tiling clone, Submitted on the opposite strand 172/174
(98 %)
0 diff
(100 %id)
AW411463 muscle, rhabdomyosarcoma .c 5065 to 5550 505 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 487/487
(100 %)
15 diff
(97.0 %id)
BX108134 parathyroid gland, parathyroid tumor .c 5216 to 5688 60 to 532   tiling clone,   473/532
(88 %)
6 diff
(98.9 %id)
W39253 parathyroid gland, parathyroid tumor .c 5216 to 5504 61 to 350       290/356
(81 %)
6 diff
(98.4 %id)
BM991602 Bone, Subchondral Bone .c 5441 to 5976 553 to 21   tiling clone, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 533/535
(99 %)
0 diff
(100 %id)
AI523449 aorta .c 5574 to 5978 405 to 1       405/405
(100 %)
0 diff
(100 %id)
W15284 parathyroid gland, parathyroid tumor .c 5582 to 5981 412 to 4       409/435
(94 %)
0 diff
(100 %id)
AI718134 aorta .c 5597 to 5976 382 to 3       380/382
(99 %)
0 diff
(100 %id)
AI681886 carcinoid, lung .c 5603 to 5977 376 to 1       376/376
(100 %)
2 diff
(99.5 %id)
BF447662 carcinoid, lung .c 5604 to 5981 378 to 1   tiling clone,   378/378
(100 %)
0 diff
(100 %id)
FN058667 breast carcinoma .c 5831 to 5901 1 to 72       72/83
(86 %)
5 diff
(94.0 %id)
AA135314 colon, tumor .d 1 to 275 1 to 275   tiling clone, fully sequenced,   275/275
(100 %)
4 diff
(98.6 %id)
AA135200 colon, tumor .d 214 to 649 436 to 1 exact tiling clone, fully sequenced,   436/436
(100 %)
0 diff
(100 %id)
BP315235 mammary gland .e 1 to 579 4 to 582 exact tiling clone,   582/582
(100 %)
1 diff
(99.9 %id)
DA523327 brain .e 1 to 572 2 to 574 L5P S6V capped   573/573
(100 %)
1 diff
(99.9 %id)
AW296228   .e 116 to 652 554 to 18 exact tiling clone, AAA   537/537
(100 %)
2 diff
(99.7 %id)
BF827143 head_normal .f-u 1 to 372 1 to 371   tiling clone,   371/371
(100 %)
5 diff
(98.7 %id)
AW517380 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .f-u 48 to 459 411 to 5 exact tiling clone,   407/411
(99 %)
0 diff
(100 %id)
AA776699   Gene ZNF557, variant not shown         This clone was ignored    
AI763188 2 pooled tumors (clear cell type), Kidney Gene ZNF557, variant not shown         Submitted on the opposite strand    
BI601073 brain, hypothalamus Gene ZNF557, variant not shown       available from MGC, Suspected internal deletion, this clone was ignored    
TI_45214445   Gene ZNF557, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI