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Gene ZNF542TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
155 supporting clones for gene ZNF542 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NR_024056.2   .a 1 to 3661 2 to 3662 exact RefSeq, tiling clone, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 3662/3662
(100 %)
0 diff
(100 %id)
BX647919 human cervix .a 197 to 2170 1 to 1974 exact available from DKFZ, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 1974/1974
(100 %)
2 diff
(99.9 %id)
DB202159 trachea .a 198 to 770 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA742361   .a 199 to 716 2 to 519   capped   518/518
(100 %)
0 diff
(100 %id)
TI_57180962   .a 215 to 1020 78 to 883 T140P K155*     806/883
(91 %)
14 diff
(98.5 %id)
DA031351   .a 216 to 792 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DA616928   .a 216 to 724 2 to 514   capped   513/513
(100 %)
4 diff
(99.3 %id)
DB073411 testis .a 222 to 756 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
AI090827 heart .a 224 to 705 1 to 482     Submitted on the opposite strand 482/482
(100 %)
0 diff
(100 %id)
BI769075 pooled lung and spleen .a 227 to 1020 1 to 795 T140P K155*     795/795
(100 %)
8 diff
(99.0 %id)
AK297170 brain .b 1 to 945 1 to 945 exact tiling clone,   945/945
(100 %)
0 diff
(100 %id)
DC349742 brain .b 1 to 561 1 to 561       561/561
(100 %)
0 diff
(100 %id)
NR_003127.2   .c 1 to 3509 1 to 3509 exact RefSeq, tiling clone,   3509/3509
(100 %)
0 diff
(100 %id)
DB051263 testis .c 1 to 544 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
BX640680 human retina .c 41 to 3203 1 to 3165 K74R available from DKFZ, AAA Possibly primed on the genome, locally A rich (19/22 A in genome downstream of last aligned base) 3165/3165
(100 %)
7 diff
(99.8 %id)
DN998899 bone marrow .c 291 to 1005 1 to 714 exact     714/714
(100 %)
8 diff
(98.9 %id)
CA842374 Pancreas, Purified pancreatic islet .c 566 to 1142 1 to 577       577/578
(99 %)
2 diff
(99.7 %id)
BE622100 melanotic melanoma, skin .c 611 to 1358 1 to 740   fully sequenced,   740/740
(100 %)
18 diff
(97.6 %id)
FN168593 breast carcinoma .c 681 to 777 1 to 97       97/97
(100 %)
5 diff
(94.9 %id)
AA286842 germinal center B cell .c 699 to 1141 1 to 443       443/443
(100 %)
0 diff
(100 %id)
AA689517 germinal center B cell .c 710 to 1142 1 to 431       431/432
(99 %)
15 diff
(96.6 %id)
BG682393 skin, squamous cell carcinoma .c 841 to 1695 1 to 860       860/861
(99 %)
18 diff
(98.0 %id)
CA389398 eye, RPE/choroid .c 867 to 1499 1 to 633       633/633
(100 %)
0 diff
(100 %id)
CR622292 Placenta Cot 25-normalized .c 973 to 3484 1 to 2512       2512/2512
(100 %)
0 diff
(100 %id)
BX378986 Placenta Cot 25-normalized .c 973 to 1926 1 to 962       962/962
(100 %)
10 diff
(99.0 %id)
BG290942 bladder, transitional cell papilloma, cell line .c 991 to 1527 1 to 547       547/927
(59 %)
20 diff
(97.9 %id)
W68223 heart .c 1048 to 1595 1 to 554       554/609
(90 %)
21 diff
(96.6 %id)
BM709743 eye, Retina Foveal and Macular .c 1175 to 1465 1 to 291   fully sequenced,   291/291
(100 %)
1 diff
(99.7 %id)
AA252461 germinal center B cell .c 1182 to 1588 1 to 406       406/406
(100 %)
1 diff
(99.8 %id)
GD161297   .c 1255 to 1487 235 to 1     Submitted on the opposite strand 235/239
(98 %)
0 diff
(100 %id)
AA476530   .c 1300 to 1733 1 to 434       434/434
(100 %)
1 diff
(99.8 %id)
BE966943 melanotic melanoma, skin .c 1328 to 2027 700 to 1   fully sequenced,   700/700
(100 %)
15 diff
(97.9 %id)
TI_151763912   .c 1330 to 2015 776 to 82   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 695/976
(71 %)
11 diff
(98.9 %id)
BQ185773 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 1339 to 1996 1 to 668       668/668
(100 %)
8 diff
(98.9 %id)
T12756   .c 1398 to 1888 489 to 2       488/554
(88 %)
0 diff
(100 %id)
BU733698 eye, Retina Foveal and Macular .c 1435 to 2028 599 to 1   fully sequenced,   599/599
(100 %)
4 diff
(99.4 %id)
BE968539 heart .c 1449 to 2024 1 to 575       575/859
(66 %)
15 diff
(98.3 %id)
AA143027 uterus .c 1473 to 2015 1 to 549       549/549
(100 %)
5 diff
(99.1 %id)
AW167187 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 1495 to 2015 525 to 1       525/525
(100 %)
35 diff
(93.4 %id)
CA842899 Pancreas, Purified pancreatic islet .c 1527 to 2014 491 to 1       491/498
(98 %)
14 diff
(97.2 %id)
AI038578   .c 1540 to 2019 475 to 1       475/475
(100 %)
11 diff
(97.7 %id)
CD678891 eye, Trabecular meshwork .c 1561 to 1801 1 to 241   AAA   241/241
(100 %)
0 diff
(100 %id)
CF134862 CNCAP(3)T-225 cell line, Prostate .c 1561 to 1913 1 to 353       353/353
(100 %)
13 diff
(96.4 %id)
TI_154162974   .c 1568 to 2164 77 to 696       620/857
(72 %)
50 diff
(94.2 %id)
AI143141 heart .c 1572 to 2015 444 to 1       444/444
(100 %)
0 diff
(100 %id)
AI348523 carcinoid, lung .c 1586 to 2018 432 to 1       432/433
(99 %)
7 diff
(98.4 %id)
AI348456 carcinoid, lung .c 1621 to 2031 413 to 3       411/413
(99 %)
0 diff
(100 %id)
DA687472   .c 1628 to 1922 2 to 296   capped   295/295
(100 %)
1 diff
(99.7 %id)
EC542567 Prostate .c 1719 to 1830 1 to 112       112/112
(100 %)
0 diff
(100 %id)
EC509469 Prostate .c 1743 to 1850 1 to 106       106/108
(98 %)
3 diff
(97.3 %id)
EC518787 Prostate .c 1743 to 1850 1 to 109       109/111
(98 %)
5 diff
(95.5 %id)
EC577749 Prostate .c 1743 to 1854 1 to 110       110/110
(100 %)
2 diff
(98.2 %id)
BX348289 Placenta Cot 25-normalized .c 1753 to 2682 1 to 928       928/929
(99 %)
29 diff
(96.9 %id)
BX115685 heart .c 1817 to 2290 476 to 2     Submitted on the opposite strand 475/476
(99 %)
0 diff
(100 %id)
W68224 heart .c 1909 to 2016 107 to 1       107/112
(95 %)
5 diff
(95.6 %id)
AA252462 germinal center B cell .c 1909 to 2015 107 to 1       107/107
(100 %)
2 diff
(98.2 %id)
EC482012 Prostate .c 1963 to 2086 130 to 12       119/130
(91 %)
0 diff
(100 %id)
DB323001   .c 2286 to 2718 433 to 1       433/433
(100 %)
10 diff
(97.7 %id)
TI_57151400   .c 2466 to 3171 31 to 732       702/986
(71 %)
14 diff
(98.6 %id)
BI762107 pooled colon, kidney, stomach .c 2467 to 3171 1 to 702       702/956
(73 %)
17 diff
(98.3 %id)
BX378985 Placenta Cot 25-normalized .c 2478 to 3479 994 to 6       989/994
(99 %)
0 diff
(100 %id)
AK130322 Prostate .c 2498 to 3502 1 to 1005   available from FLJ,   1005/1005
(100 %)
4 diff
(99.7 %id)
BQ376169 testis_normal .c 2587 to 2787 1 to 199       199/199
(100 %)
6 diff
(97.0 %id)
AA205323   .c 2736 to 3237 507 to 3       505/508
(99 %)
0 diff
(100 %id)
AI027175 parathyroid gland, parathyroid tumor .c 2824 to 3233 428 to 11   AAA Possibly primed on the genome, locally A rich (19/22 A in genome downstream of last aligned base) 418/418
(100 %)
7 diff
(98.4 %id)
TI_154134164   .c 2909 to 3506 706 to 102   AAA Possibly primed on the genome, locally A rich (19/22 A in genome downstream of last aligned base) 605/1237
(48 %)
26 diff
(97.9 %id)
AW576383 lymph .c 3029 to 3506 496 to 18   AAA Possibly primed on the genome, locally A rich (19/22 A in genome downstream of last aligned base) 479/479
(100 %)
1 diff
(99.8 %id)
AW021433 cochlea, ear .c 3098 to 3500 7 to 408   AAA Possibly primed on the genome, locally A rich (19/22 A in genome downstream of last aligned base) 402/411
(97 %)
2 diff
(99.6 %id)
BF446769 carcinoid, lung .c 3132 to 3503 374 to 3       372/374
(99 %)
0 diff
(100 %id)
AA868077   .c 3153 to 3506 366 to 13   AAA Possibly primed on the genome, locally A rich (19/22 A in genome downstream of last aligned base) 354/354
(100 %)
0 diff
(100 %id)
GD147615   .c 3325 to 3501 1 to 177       177/183
(96 %)
2 diff
(99.0 %id)
NR_024057.2   .d 1 to 3589 2 to 3590 exact RefSeq, tiling clone, AAA Possibly primed on the genome, locally A rich (19/22 A in genome downstream of last aligned base) 3590/3590
(100 %)
0 diff
(100 %id)
DA187598 amygdala .d 183 to 718 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
BP873000 embryonal kidney .d 198 to 779 1 to 581       581/581
(100 %)
12 diff
(98.0 %id)
DA584115 lung .d 199 to 792 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
DA789269 brain .d 199 to 774 2 to 578   capped   577/577
(100 %)
3 diff
(99.5 %id)
DA823197 pericardium .d 199 to 756 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DA950968 Spleen .d 199 to 769 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB148486 thymus .d 199 to 753 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA042896 bladder .d 201 to 692 2 to 493   capped   492/492
(100 %)
1 diff
(99.8 %id)
TI_149276631   .d 213 to 950 64 to 794 N95I H96I T97H Q98K K99R ...   Submitted on the opposite strand 731/1007
(72 %)
17 diff
(98.4 %id)
DA710487   .d 214 to 767 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DA955624 Spleen .d 214 to 781 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DB144675 thymus .d 214 to 758 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
DB184581 liver, tumor tissue .d 214 to 775 2 to 563   capped   562/562
(100 %)
3 diff
(99.5 %id)
DA027434   .d 216 to 805 2 to 593   capped   592/592
(100 %)
2 diff
(99.7 %id)
DA067699 cerebellum .d 216 to 791 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA485448 brain .d 216 to 762 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DA590960 lung .d 216 to 788 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
DA724793   .d 216 to 772 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA760867 tongue .d 216 to 1026 2 to 825 R94K N95K H96S T97Y Q98T ... capped   824/830
(99 %)
25 diff
(97.0 %id)
DA854153 placenta .d 216 to 807 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
DA947581 Spleen .d 216 to 791 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DA990420 synovial membrane tissue from rheumatioidarthritis .d 216 to 754 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
DA999565 breast, tumor tissue .d 216 to 801 2 to 589   capped   588/588
(100 %)
2 diff
(99.7 %id)
DB004640 breast, tumor tissue .d 216 to 765 2 to 553   capped   552/552
(100 %)
2 diff
(99.7 %id)
DB269839 uterus .d 216 to 770 2 to 559   capped   558/558
(100 %)
3 diff
(99.5 %id)
DA660373   .d 218 to 779 2 to 565   capped   564/564
(100 %)
3 diff
(99.5 %id)
CN310858 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 219 to 876 1 to 658       658/658
(100 %)
3 diff
(99.6 %id)
CB854015 lung, Primary Lung Epithelial Cells .d 224 to 832 1 to 607     Submitted on the opposite strand 607/609
(99 %)
3 diff
(99.6 %id)
AL539099 brain, fetal brain .d 227 to 1271 12 to 1041 K77X T116P N140Y     1030/1047
(98 %)
28 diff
(97.4 %id)
CX760208 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .d 227 to 907 1 to 681     Submitted on the opposite strand 681/681
(100 %)
0 diff
(100 %id)
AL833621 human endometrium carcinoma cell line .d 231 to 3319 1 to 3089 exact available from DKFZ, AAA Possibly primed on the genome, locally A rich (19/22 A in genome downstream of last aligned base) 3089/3089
(100 %)
17 diff
(99.5 %id)
DA412445 thalamus .d 234 to 721 2 to 489   capped   488/488
(100 %)
0 diff
(100 %id)
DA752878   .d 234 to 793 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
AW503578 lymph .d 249 to 702 1 to 454       454/454
(100 %)
3 diff
(99.4 %id)
TI_154159516   .d 253 to 720 81 to 549       469/469
(100 %)
11 diff
(97.7 %id)
TI_154159521   .d 253 to 722 79 to 548       470/470
(100 %)
2 diff
(99.6 %id)
BC089419 Lymph, normal germinal center B cells .d 256 to 3589 1 to 3335 exact AAA Possibly primed on the genome, locally A rich (19/22 A in genome downstream of last aligned base) 3335/3335
(100 %)
8 diff
(99.8 %id)
AV748656 Pituitary .d 286 to 782 1 to 495       495/500
(99 %)
7 diff
(98.6 %id)
AA831490 germinal center B cell .d 295 to 688 1 to 393     Submitted on the opposite strand 393/393
(100 %)
4 diff
(99.0 %id)
AI803309   .d 295 to 726 1 to 432     Submitted on the opposite strand 432/432
(100 %)
1 diff
(99.8 %id)
AL567664 brain, fetal brain .d 2335 to 3259 925 to 1       925/925
(100 %)
12 diff
(98.8 %id)
DA694268   .e 1 to 571 2 to 574 exact tiling clone, capped   573/573
(100 %)
1 diff
(99.9 %id)
DA146557 amygdala .f 1 to 545 2 to 546 exact tiling clone, capped   545/545
(100 %)
0 diff
(100 %id)
DB062073 testis .g 1 to 549 2 to 550 exact tiling clone, capped   549/549
(100 %)
0 diff
(100 %id)
DB290552 uterus .g 1 to 515 2 to 516 exact capped   515/515
(100 %)
0 diff
(100 %id)
NR_033418.1   .h 1 to 3729 2 to 3730 exact RefSeq, tiling clone, AAA Possibly primed on the genome, locally A rich (19/22 A in genome downstream of last aligned base) 3730/3730
(100 %)
0 diff
(100 %id)
DA311525 hippocampus .h 19 to 576 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
BP873018 embryonal kidney .h 173 to 708 1 to 539 Y5F Q6H V9A V19A L23S ...     539/550
(98 %)
38 diff
(93.1 %id)
BX510277   .h 174 to 594 1 to 421       421/421
(100 %)
4 diff
(99.1 %id)
DA718087   .h 176 to 727 2 to 554 exact capped   553/553
(100 %)
1 diff
(99.9 %id)
DA031481   .h 192 to 760 2 to 570 exact capped   569/569
(100 %)
0 diff
(100 %id)
DA493088 brain .h 199 to 660 2 to 463   capped   462/462
(100 %)
0 diff
(100 %id)
DA616756   .h 199 to 741 2 to 545 exact capped   544/544
(100 %)
1 diff
(99.9 %id)
DA683050   .h 199 to 725 2 to 528 exact capped   527/527
(100 %)
0 diff
(100 %id)
DA768687 brain .h 205 to 701 2 to 499   capped   498/498
(100 %)
1 diff
(99.8 %id)
DA088696 cerebellum .h 216 to 601 2 to 387   capped   386/386
(100 %)
2 diff
(99.5 %id)
DA298181 hippocampus .h 216 to 784 2 to 571 exact capped   570/570
(100 %)
1 diff
(99.9 %id)
DA300444 hippocampus .h 216 to 803 2 to 589 exact capped   588/588
(100 %)
0 diff
(100 %id)
DA495065 brain .h 216 to 607 2 to 393   capped   392/392
(100 %)
0 diff
(100 %id)
BP871930 embryonal kidney .h 222 to 806 1 to 579 Q54X     579/582
(99 %)
11 diff
(98.2 %id)
BQ050552 leiomyosarcoma, uterus .h 239 to 950 9 to 729 exact available from MGC,   721/1068
(67 %)
29 diff
(97.3 %id)
BC064603 Uterus, leiomyosarcoma .h 241 to 3456 1 to 3217 exact available from MGC, AAA Possibly primed on the genome, locally A rich (19/22 A in genome downstream of last aligned base) 3217/3217
(100 %)
18 diff
(99.5 %id)
AW503572 lymph .h 249 to 592 1 to 344       344/344
(100 %)
2 diff
(99.5 %id)
AI016164   .h 296 to 627 1 to 332     Submitted on the opposite strand 332/332
(100 %)
16 diff
(95.2 %id)
AI018813   .h 404 to 557 1 to 154     Submitted on the opposite strand 154/154
(100 %)
0 diff
(100 %id)
BP429366   .h 452 to 852 1 to 401 exact     401/401
(100 %)
3 diff
(99.3 %id)
NR_024055.2   .i 1 to 3411 2 to 3412 exact RefSeq, tiling clone,   3412/3412
(100 %)
0 diff
(100 %id)
DA095148 cerebellum .i 1 to 539 2 to 540   capped   539/539
(100 %)
1 diff
(99.9 %id)
DA679733   .i 1 to 554 2 to 556   capped   555/556
(99 %)
2 diff
(99.7 %id)
DN991121 brain, whole brain .i 287 to 905 9 to 627 exact     619/627
(98 %)
6 diff
(99.1 %id)
DA731124   .i 375 to 1175 2 to 807   capped   806/815
(98 %)
6 diff
(99.3 %id)
DB363197   .i 2483 to 3065 582 to 1       582/582
(100 %)
5 diff
(99.2 %id)
BM547355 ovary (pool of 3) .j 1 to 999 1005 to -1 V9F tiling clone, Submitted on the opposite strand 1005/1079
(93 %)
24 diff
(97.8 %id)
DA098337 cerebellum .j 966 to 1442 2 to 478   tiling clone, capped   477/477
(100 %)
0 diff
(100 %id)
DB238822 trachea .k 1 to 586 2 to 587   tiling clone, capped   586/586
(100 %)
0 diff
(100 %id)
BI560149 testis .k 158 to 950 1 to 817 L52Y S53L A54Q K55R R56G ... tiling clone,   745/844
(88 %)
42 diff
(95.1 %id)
BF928307 nervous_tumor .k 272 to 667 396 to 1   tiling clone, Submitted on the opposite strand 396/396
(100 %)
1 diff
(99.8 %id)
TI_44348971   .l 1 to 792 124 to 939 exact tiling clone,   816/966
(84 %)
62 diff
(93.6 %id)
BI020649 marrow .l 618 to 770 168 to 17   tiling clone,   152/168
(90 %)
0 diff
(100 %id)
DA570685.
matches multiple genes
whole embryo, mainly head .m 1 to 672 4 to 675 exact tiling clone, capped also hits gene LOC283788 674/775
(86 %)
1 diff
(99.9 %id)
DA697478   .n 1 to 566 2 to 568 exact tiling clone, capped   567/567
(100 %)
1 diff
(99.9 %id)
DB116236 thymus .o 1 to 545 2 to 547 exact tiling clone, capped   546/546
(100 %)
2 diff
(99.7 %id)
DC371520   .p 1 to 497 1 to 497 I69X tiling clone,   497/497
(100 %)
0 diff
(100 %id)
AK097128 Spleen Gene ZNF542, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AW377493 colon Gene ZNF542, variant not shown         Suspected internal deletion, this clone was ignored    
BF368241 placenta_normal Gene ZNF542, variant not shown         Suspected internal deletion, this clone was ignored    
DB299613 cerebellum Gene ZNF542, variant not shown         This clone was ignored    
DA107717 cerebellum Gene ZNF542, variant not shown       capped This clone was ignored    
H39216 eye, retina Gene ZNF542, variant not shown         This clone was ignored    
H39226 eye, retina Gene ZNF542, variant not shown         This clone was ignored    
DA656879   Gene ZNF542, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA936968 Spleen Gene ZNF542, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB332901 Spleen Gene ZNF542, variant not shown         Suspected internal deletion, this clone was ignored    
BU622809 cell lines, Enchondroma Gene ZNF542, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C