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Gene TSHZ3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
132 supporting clones for gene TSHZ3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA511544 brain .a 1 to 366 2 to 366   tiling clone, capped   365/365
(100 %)
3 diff
(99.2 %id)
DB460052 testis .a 22 to 486 1 to 464       464/464
(100 %)
1 diff
(99.8 %id)
AW043668 pooled .a 196 to 702 1 to 506     Submitted on the opposite strand 506/506
(100 %)
1 diff
(99.9 %id)
AI015687 Kidney .a 214 to 597 1 to 383     Submitted on the opposite strand 383/383
(100 %)
1 diff
(99.8 %id)
DB289772 uterus .a 259 to 858 2 to 601   capped   600/600
(100 %)
4 diff
(99.4 %id)
NM_020856.2   .a 263 to 5173 1 to 4911 exact RefSeq, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 4911/4911
(100 %)
0 diff
(100 %id)
BF446014 breast, invasive ductal carcinoma, 3 pooled samples .a 289 to 700 1 to 412     Submitted on the opposite strand 412/412
(100 %)
4 diff
(99.1 %id)
DA757791   .a 307 to 763 2 to 458   capped   457/457
(100 %)
0 diff
(100 %id)
BX648745 endometrium carcinoma cell line .a 309 to 4026 1 to 3718 E469G available from DKFZ, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 3718/3718
(100 %)
3 diff
(100.0 %id)
AK291466 brain .a 310 to 3782 1 to 3473 N370S Q930L tiling clone,   3473/3473
(100 %)
5 diff
(99.9 %id)
DA758965   .a 311 to 798 2 to 489   capped   488/488
(100 %)
0 diff
(100 %id)
DA779328 brain .a 311 to 878 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA807848 brain .a 311 to 911 2 to 602   capped   601/601
(100 %)
0 diff
(100 %id)
DB287903 uterus .a 311 to 865 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DB280326 uterus .a 312 to 858 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
AB040907   .a 332 to 4023 1 to 3692   available from KIAA,   3692/3692
(100 %)
2 diff
(100.0 %id)
DR000308 fetal brain .a 333 to 1005 9 to 681       673/681
(98 %)
0 diff
(100 %id)
DA789185 brain .a 364 to 927 12 to 576   capped   565/575
(98 %)
6 diff
(99.0 %id)
BI161216 epithelioid carcinoma cell line, Pancreas .a 407 to 1138 1 to 740       740/740
(100 %)
47 diff
(93.7 %id)
BG748596 eye, normal pigmented retinal epithelium .a 417 to 974 1 to 577       577/837
(68 %)
21 diff
(97.5 %id)
DA239189 brain .a 466 to 1037 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
CN256026 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 541 to 1285 1 to 745       745/745
(100 %)
2 diff
(99.8 %id)
AL136805 testis .a 851 to 5173 1 to 4323   tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 4323/4323
(100 %)
1 diff
(100.0 %id)
BC127095 PCR rescued clones .a 851 to 4386 1 to 3536       3536/3536
(100 %)
1 diff
(100.0 %id)
BC127096 PCR rescued clones .a 851 to 4386 1 to 3536       3536/3536
(100 %)
1 diff
(100.0 %id)
DR002347 fetal brain .a 869 to 1479 32 to 642       611/642
(95 %)
6 diff
(99.1 %id)
DA772146 brain .a 920 to 1484 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
BE909222 epithelioid carcinoma, Pancreas .a 922 to 1680 1 to 764       764/939
(81 %)
40 diff
(95.8 %id)
AL602482 human skeletal muscle .a 1165 to 1764 1 to 601       601/601
(100 %)
6 diff
(99.1 %id)
CN256025 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1289 to 2027 1 to 739       739/739
(100 %)
0 diff
(100 %id)
DA789405 brain .a 1508 to 2073 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
AK293267   .a 1572 to 4018 1 to 2447       2447/2447
(100 %)
2 diff
(100.0 %id)
DC299656   .a 1572 to 2133 1 to 562       562/562
(100 %)
0 diff
(100 %id)
DA788499 brain .a 1576 to 2153 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
AA312595   .a 1600 to 2102 1 to 503       503/503
(100 %)
1 diff
(99.9 %id)
TI_44459900   .a 1730 to 2554 29 to 858       830/864
(96 %)
18 diff
(98.0 %id)
BI518697 leukocyte .a 1731 to 2554 1 to 829       829/835
(99 %)
18 diff
(97.9 %id)
CA407110 adipose .a 1749 to 2366 1 to 616       616/616
(100 %)
2 diff
(99.7 %id)
BU079144 Pancreas, Purified pancreatic islet .a 1794 to 2323 1 to 530       530/530
(100 %)
9 diff
(98.4 %id)
DA148935 amygdala .a 1909 to 2423 2 to 516   capped   515/515
(100 %)
1 diff
(99.9 %id)
CR626691 fetal brain .a 1941 to 5146 1 to 3206       3206/3206
(100 %)
0 diff
(100 %id)
AL535086 brain, fetal brain .a 1941 to 3056 1 to 1104       1104/1104
(100 %)
21 diff
(98.1 %id)
CA392895 eye, RPE/choroid .a 1944 to 2297 1 to 354       354/354
(100 %)
0 diff
(100 %id)
BQ884089 dorsal root ganglia .a 2025 to 2914 1 to 894       894/894
(100 %)
9 diff
(99.0 %id)
H20657 whole brain .a 2199 to 2599 1 to 406       406/406
(100 %)
8 diff
(98.1 %id)
AW876753 pnet .a 2393 to 2669 281 to 6       276/297
(92 %)
0 diff
(100 %id)
BP364279 lung .a 2518 to 3098 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DA526031 brain .a 2669 to 3229 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
BP378244 uterus .a 2695 to 3267 1 to 573       573/573
(100 %)
0 diff
(100 %id)
BX451946 brain, fetal brain .a 2762 to 3655 1 to 911       911/960
(94 %)
48 diff
(95.0 %id)
BG826712 muscle, rhabdomyosarcoma .a 2793 to 3641 1 to 852       852/853
(99 %)
15 diff
(98.3 %id)
BM722326 eye, fetal eye .a 2912 to 3648 1 to 737     Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 737/737
(100 %)
1 diff
(99.9 %id)
AA371014 Prostate .a 3185 to 3477 1 to 293       293/293
(100 %)
1 diff
(99.7 %id)
BG778233 adenocarcinoma, Prostate .a 3212 to 3838 1 to 627       627/629
(99 %)
7 diff
(98.9 %id)
BG698743 skin .a 3330 to 4167 1 to 842       842/950
(88 %)
20 diff
(97.9 %id)
BF130079 hypernephroma, Kidney .a 3376 to 3995 1 to 619       619/787
(78 %)
26 diff
(96.7 %id)
CD000034 Pooled-Skin .a 3401 to 4074 1 to 682       682/854
(79 %)
17 diff
(98.1 %id)
DC425730   .a 3464 to 4018 557 to 1       557/559
(99 %)
3 diff
(99.5 %id)
BQ100745 Islets of Langerhans, Pancreas .a 3474 to 4019 546 to 1       546/562
(97 %)
1 diff
(99.9 %id)
CK823073 Islets of Langerhans, Pancreas .a 3474 to 4019 546 to 1       546/547
(99 %)
1 diff
(99.9 %id)
BQ101031 Islets of Langerhans, Pancreas .a 3475 to 3945 1 to 471       471/471
(100 %)
1 diff
(99.8 %id)
CK823074 Islets of Langerhans, Pancreas .a 3475 to 3995 1 to 521   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 521/521
(100 %)
2 diff
(99.7 %id)
AA135565 uterus .a 3514 to 3995 10 to 492   fully sequenced,   483/492
(98 %)
6 diff
(98.8 %id)
R47756 breast .a 3519 to 3838 1 to 327       327/334
(97 %)
7 diff
(98.0 %id)
AA126321 uterus .a 3519 to 3685 1 to 168   fully sequenced,   168/168
(100 %)
2 diff
(98.9 %id)
AA129583 uterus .a 3520 to 3791 1 to 274   fully sequenced,   274/274
(100 %)
4 diff
(98.6 %id)
BM988763 lung, Lung Focal Fibrosis .a 3556 to 4020 481 to 17       465/481
(96 %)
0 diff
(100 %id)
AI685292 pooled .a 3563 to 4019 457 to 1       457/457
(100 %)
1 diff
(99.8 %id)
AI129607 uterus .a 3567 to 3976 447 to 38   AAA   410/430
(95 %)
0 diff
(100 %id)
AI075883   .a 3568 to 4020 457 to 5       453/457
(99 %)
0 diff
(100 %id)
AI289011 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3568 to 4012 445 to 1       445/445
(100 %)
1 diff
(99.8 %id)
BF510588   .a 3573 to 4028 468 to 13       456/481
(94 %)
0 diff
(100 %id)
BX411243 brain, fetal brain .a 3577 to 4552 963 to 1       963/973
(98 %)
12 diff
(98.8 %id)
AW183880 pooled .a 3581 to 4020 445 to 6       440/445
(98 %)
0 diff
(100 %id)
AA147531 uterus .a 3593 to 4012 423 to 1       423/429
(98 %)
4 diff
(99.1 %id)
H20565 whole brain .a 3598 to 4028 443 to 5       439/446
(98 %)
0 diff
(100 %id)
BX411249.
matches multiple genes
brain, fetal brain .a 3613 to 4269 723 to 74     also hits gene LOC80154 650/723
(89 %)
0 diff
(100 %id)
C14723   .a 3620 to 3923 1 to 304   fully sequenced,   304/304
(100 %)
1 diff
(99.7 %id)
C14728   .a 3620 to 3923 1 to 305   fully sequenced,   305/305
(100 %)
2 diff
(99.4 %id)
C15069   .a 3620 to 3923 1 to 304       304/457
(66 %)
1 diff
(99.8 %id)
C15120   .a 3620 to 3923 1 to 304   fully sequenced,   304/304
(100 %)
1 diff
(99.7 %id)
C15406   .a 3620 to 3923 1 to 303       303/439
(69 %)
3 diff
(99.4 %id)
C15762   .a 3620 to 3923 1 to 304       304/452
(67 %)
5 diff
(98.9 %id)
D80947 brain .a 3620 to 3788 1 to 169   fully sequenced,   169/169
(100 %)
0 diff
(100 %id)
D80963 brain .a 3620 to 3917 298 to 1       298/298
(100 %)
0 diff
(100 %id)
D81112 brain .a 3620 to 3923 1 to 302   fully sequenced,   302/302
(100 %)
6 diff
(98.1 %id)
D81346 brain .a 3620 to 3923 1 to 299       299/337
(88 %)
11 diff
(96.8 %id)
D81806 brain .a 3620 to 3860 1 to 242       242/242
(100 %)
3 diff
(98.8 %id)
AA128180 uterus .a 3655 to 4012 359 to 1   fully sequenced,   359/359
(100 %)
4 diff
(98.9 %id)
C14722   .a 3695 to 3917 223 to 1   fully sequenced,   223/223
(100 %)
0 diff
(100 %id)
BF701283 brain, primitive neuroectoderm .a 3697 to 4307 1 to 597       597/868
(68 %)
10 diff
(98.9 %id)
AI582568 adenocarcinoma, Pancreas .a 3702 to 4023 322 to 1       322/322
(100 %)
0 diff
(100 %id)
AW451743   .a 3706 to 4023 335 to 18   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 318/318
(100 %)
4 diff
(98.8 %id)
D60595 brain .a 3758 to 3917 158 to 1   fully sequenced,   158/158
(100 %)
1 diff
(99.4 %id)
AA129584 uterus .a 3785 to 3955 171 to 1   fully sequenced,   171/171
(100 %)
0 diff
(100 %id)
C14727   .a 3798 to 3917 120 to 1   fully sequenced,   120/120
(100 %)
0 diff
(100 %id)
D81111 brain .a 3824 to 3917 94 to 1   fully sequenced,   94/94
(100 %)
0 diff
(100 %id)
AA135475 uterus .a 3824 to 4012 188 to 1   fully sequenced,   188/188
(100 %)
1 diff
(99.5 %id)
C15119   .a 3848 to 3917 70 to 1   fully sequenced,   70/70
(100 %)
0 diff
(100 %id)
BG498136 adenocarcinoma, Prostate .a 3940 to 4696 1 to 759       759/854
(88 %)
30 diff
(96.5 %id)
BQ448367 Knee, Osteoarthritic Cartilage .a 4057 to 4665 630 to 19   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 612/612
(100 %)
3 diff
(99.6 %id)
BG169168 hypernephroma, cell line, Kidney .a 4081 to 4736 1 to 657       657/908
(72 %)
20 diff
(97.8 %id)
M85879   .a 4082 to 4421 340 to 1       340/340
(100 %)
3 diff
(99.2 %id)
BF941431 brain, glioblastoma (pooled) .a 4105 to 4567 464 to 1       464/464
(100 %)
3 diff
(99.4 %id)
AI151039 brain, glioblastoma (pooled) .a 4116 to 4567 452 to 1       452/452
(100 %)
0 diff
(100 %id)
AI151043 brain, glioblastoma (pooled) .a 4116 to 4567 452 to 1       452/452
(100 %)
0 diff
(100 %id)
BX108200 lung .a 4140 to 4887 1 to 750       750/750
(100 %)
4 diff
(99.5 %id)
AI741882 pooled .a 4141 to 4671 533 to 1       533/533
(100 %)
10 diff
(98.2 %id)
BU740165 eye, fetal eye .a 4147 to 4677 549 to 16   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 534/534
(100 %)
3 diff
(99.5 %id)
W04928 lung .a 4177 to 4466 1 to 290       290/290
(100 %)
0 diff
(100 %id)
AL565770 brain, fetal brain .a 4183 to 5146 958 to 1       958/999
(95 %)
29 diff
(97.1 %id)
CB998820 Blood vessels - aorta, basilar and artery .a 4188 to 4912 1 to 738       738/744
(99 %)
39 diff
(94.8 %id)
DB525494 testis .a 4238 to 4680 1 to 443     Submitted on the opposite strand 443/444
(99 %)
1 diff
(99.8 %id)
AI453463 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 4262 to 4677 416 to 1       416/416
(100 %)
0 diff
(100 %id)
TI_154108101   .a 4306 to 5173 937 to 75   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 863/966
(89 %)
11 diff
(98.9 %id)
AA774209   .a 4399 to 4677 279 to 1       279/279
(100 %)
2 diff
(99.3 %id)
R50393 breast .a 4414 to 4680 269 to 1       269/269
(100 %)
2 diff
(99.3 %id)
CA447401 Chondrosarcoma, Left Pelvis .a 4440 to 5173 750 to 17   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 734/734
(100 %)
0 diff
(100 %id)
AA258282 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4542 to 4944 1 to 403       403/403
(100 %)
4 diff
(99.1 %id)
CA449915 Chondrosarcoma, Left Pelvis .a 4658 to 5175 534 to 17       518/534
(97 %)
0 diff
(100 %id)
AI859810 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 4688 to 5173 487 to 1       487/487
(100 %)
1 diff
(99.8 %id)
AI826837 normal prostate, Prostate .a 4710 to 5173 464 to 1       464/464
(100 %)
5 diff
(99.0 %id)
AI580796 uterus .a 4717 to 5175 464 to 6   tiling clone,   459/464
(98 %)
0 diff
(100 %id)
AI355718 lung .a 4723 to 5172 450 to 1       450/450
(100 %)
1 diff
(99.8 %id)
AA773667 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4724 to 4896 1 to 173       173/173
(100 %)
3 diff
(98.3 %id)
AI355728 lung .a 4725 to 5172 448 to 1       448/448
(100 %)
1 diff
(99.8 %id)
N70608 lung .a 4729 to 5173 445 to 1       445/445
(100 %)
0 diff
(100 %id)
AI355719 lung .a 4729 to 5172 445 to 1       445/445
(100 %)
7 diff
(98.5 %id)
BF246134 brain, glioblastoma .a 4740 to 5173 1 to 426       426/460
(92 %)
13 diff
(97.2 %id)
AI355730 lung .a 4744 to 5172 429 to 1       429/429
(100 %)
1 diff
(99.8 %id)
AI081438 senescent fibroblast .a 4746 to 5173 443 to 16   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 428/428
(100 %)
1 diff
(99.8 %id)
AI908900 breast .a 4754 to 5099 350 to 5       346/350
(98 %)
0 diff
(100 %id)
AA490682 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4754 to 5108 1 to 355       355/355
(100 %)
3 diff
(99.2 %id)
AI239462 pooled .a 4762 to 5175 417 to 4       414/417
(99 %)
0 diff
(100 %id)
AA843162 parathyroid gland, parathyroid tumor .a 4777 to 5174 404 to 7       398/404
(98 %)
0 diff
(100 %id)
AW139731   .a 4786 to 5173 403 to 16   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 388/398
(97 %)
0 diff
(100 %id)
AI609656 brain, tumor, 5 pooled (see description) .a 4867 to 5173 335 to 28   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 308/308
(100 %)
8 diff
(97.5 %id)
AA788806 parathyroid gland, parathyroid tumor .a 4868 to 5175 312 to 5       308/312
(98 %)
0 diff
(100 %id)
AI540495 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 5083 to 5175 93 to 1       93/93
(100 %)
0 diff
(100 %id)
AW207822   .b 1 to 319 1 to 319   tiling clone, Submitted on the opposite strand 319/319
(100 %)
5 diff
(98.5 %id)
AI380291 B-cell, chronic lymphotic leukemia .b 96 to 535 450 to 11   tiling clone, AAA   440/446
(98 %)
6 diff
(98.7 %id)
BG198278   .b 166 to 535 1 to 363   AAA   363/365
(99 %)
7 diff
(98.1 %id)
DA240055 brain .c 1 to 600 8 to 607 exact tiling clone, capped   600/607
(98 %)
7 diff
(98.9 %id)
DR000517 fetal brain .c 234 to 835 1 to 602   tiling clone,   602/602
(100 %)
0 diff
(100 %id)
DB277538 uterus Gene TSHZ3, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI