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Gene ZSCAN16TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
144 supporting clones for gene ZSCAN16 back to top
cDNA accession
Links to the sequence		 Tissue

most 5' clones
in red		 Match
mRNA		 From bp
to bp
in mRNA		 From bp
to bp
in accs.		 Clone encodes
complete protein
(with AA variation)		 Features Anomalies
detected by
AceView		 Accession
match over
(% length)		 Base differences
relative to genome
(% identity)
AV705346 adrenal gland .a 683 to 1324 1 to 642       642/643
(99 %)		 10 diff
(98.5 %id)
AK025844   .a 53 to 1325 1 to 1273 exact tiling clone, available from FLJ, AAA   1273/1273
(100 %)		 0 diff
(100 %id)
AK294017 cerebellum .d 32 to 1289 1 to 1258 exact tiling clone,   1258/1258
(100 %)		 1 diff
(100.0 %id)
AK309837 brain .d 32 to 929 1 to 898 exact     898/898
(100 %)		 0 diff
(100 %id)
BP200669 amygdala .g 1 to 583 1 to 582 exact tiling clone,   582/582
(100 %)		 1 diff
(99.9 %id)
AW977441   .a 775 to 1324 552 to 2     Submitted on the opposite strand 551/562
(98 %)		 0 diff
(100 %id)
BC004255 Uterus, endometrium adenocarcinoma .a 79 to 1325 1 to 1247 exact available from MGC, AAA   1247/1247
(100 %)		 0 diff
(100 %id)
BF943247 nervous_normal .d 688 to 1161 481 to 9     Submitted on the opposite strand 473/481
(98 %)		 0 diff
(100 %id)
BF943250 nervous_normal .d 677 to 1107 24 to 454       431/454
(94 %)		 6 diff
(98.7 %id)
BF943258 nervous_normal .d 1002 to 1161 170 to 9     Submitted on the opposite strand 162/170
(95 %)		 0 diff
(100 %id)
BF943401 nervous_normal .d 679 to 1093 1 to 418       418/420
(99 %)		 26 diff
(93.9 %id)
BF945264 nervous_normal .d 680 to 1162 495 to 15     Submitted on the opposite strand 481/496
(96 %)		 0 diff
(100 %id)
BF947575 nervous_normal .d 687 to 1162 488 to 10       479/488
(98 %)		 0 diff
(100 %id)
BF954047 nervous_normal .d 671 to 1156 1 to 486       486/486
(100 %)		 5 diff
(99.0 %id)
BF954052 nervous_normal .d 680 to 1155 25 to 500       476/500
(95 %)		 6 diff
(98.8 %id)
BF954161 nervous_normal .d 680 to 1156 31 to 507       477/507
(94 %)		 6 diff
(98.9 %id)
BF956160 nervous_normal .d 677 to 1103 1 to 427       427/427
(100 %)		 3 diff
(99.3 %id)
BF959002 nervous_normal .d 696 to 1146 450 to 2       449/450
(99 %)		 0 diff
(100 %id)
BF959061 nervous_normal .d 677 to 1162 18 to 502       485/509
(95 %)		 7 diff
(98.7 %id)
BF959463 nervous_normal .d 680 to 1156 492 to 16       477/492
(96 %)		 0 diff
(100 %id)
BF959471 nervous_normal .d 680 to 1167 12 to 499       488/501
(97 %)		 7 diff
(98.7 %id)
BF960257 nervous_normal .d 680 to 1055 7 to 382       376/382
(98 %)		 0 diff
(100 %id)
BF960983 nervous_normal .d 680 to 1131 24 to 475       452/475
(95 %)		 6 diff
(98.8 %id)
BF961036 nervous_normal .d 680 to 979 15 to 314       300/314
(95 %)		 6 diff
(98.1 %id)
BF961700 nervous_normal .d 774 to 1139 365 to 2       364/365
(99 %)		 0 diff
(100 %id)
BF961766 nervous_normal .d 687 to 1162 485 to 11       475/486
(97 %)		 0 diff
(100 %id)
BF961808 nervous_normal .d 680 to 1077 399 to 3       397/413
(96 %)		 0 diff
(100 %id)
BF961917 nervous_normal .d 707 to 1162 474 to 20       455/474
(95 %)		 0 diff
(100 %id)
BF961922 nervous_normal .d 676 to 943 1 to 268       268/268
(100 %)		 3 diff
(98.9 %id)
BF961986 nervous_normal .d 839 to 1156 318 to 1       318/318
(100 %)		 3 diff
(99.1 %id)
BF962732 nervous_normal .d 680 to 913 234 to 3       232/248
(93 %)		 0 diff
(100 %id)
BF962968 nervous_normal .d 680 to 1100 27 to 447       421/447
(94 %)		 8 diff
(98.3 %id)
BF963273 nervous_normal .d 680 to 1161 491 to 8       484/505
(95 %)		 0 diff
(100 %id)
BF963627 nervous_normal .d 680 to 1162 489 to 7       483/512
(94 %)		 0 diff
(100 %id)
BF963650 nervous_normal .d 672 to 1156 3 to 487       485/487
(99 %)		 6 diff
(98.8 %id)
BI033847 nervous_normal .d 680 to 821 17 to 158       142/158
(89 %)		 6 diff
(96.3 %id)
BI033948 nervous_normal .d 680 to 1156 477 to 1       477/477
(100 %)		 3 diff
(99.4 %id)
BI033952 nervous_normal .d 677 to 1156 12 to 491       480/491
(97 %)		 11 diff
(97.8 %id)
BI034929 nervous_normal .d 903 to 1156 1 to 253       253/253
(100 %)		 1 diff
(99.7 %id)
BI035298 nervous_normal .d 675 to 1156 1 to 484       484/484
(100 %)		 13 diff
(97.4 %id)
BI035340 nervous_normal .d 681 to 1156 476 to 1       476/489
(97 %)		 4 diff
(99.2 %id)
BI035343 nervous_normal .d 680 to 1016 15 to 351       337/351
(96 %)		 6 diff
(98.3 %id)
BI035475 nervous_normal .d 680 to 1156 478 to 2       477/495
(96 %)		 0 diff
(100 %id)
BI035516 nervous_normal .d 680 to 1156 15 to 491       477/491
(97 %)		 7 diff
(98.6 %id)
BI035560 nervous_normal .d 680 to 1156 477 to 1       477/491
(97 %)		 4 diff
(99.2 %id)
BI035565 nervous_normal .d 680 to 1066 15 to 401       387/401
(96 %)		 6 diff
(98.6 %id)
BI035571 nervous_normal .d 680 to 1156 477 to 2       476/478
(99 %)		 0 diff
(100 %id)
BI035620 nervous_normal .d 680 to 1162 1 to 483       483/488
(98 %)		 2 diff
(99.6 %id)
DA093436 cerebellum .c 1 to 570 2 to 571   tiling clone, capped   570/570
(100 %)		 0 diff
(100 %id)
DA104540 cerebellum .d 4 to 549 2 to 547   capped   546/546
(100 %)		 0 diff
(100 %id)
DA108362 cerebellum .d 756 to 1308 2 to 554   tiling clone, capped   553/553
(100 %)		 1 diff
(99.9 %id)
DA123985 cerebellum .d 33 to 588 2 to 557   capped   556/556
(100 %)		 0 diff
(100 %id)
DA232571 brain .h 1 to 574 2 to 575 exact tiling clone, capped   574/574
(100 %)		 1 diff
(99.9 %id)
DA245816 brain .g 13 to 609 2 to 598 exact tiling clone, capped   597/597
(100 %)		 0 diff
(100 %id)
DA250047 brain .d 33 to 608 2 to 577   capped   576/576
(100 %)		 1 diff
(99.9 %id)
DA327398 hippocampus .d 4 to 554 2 to 552   capped   551/551
(100 %)		 1 diff
(99.9 %id)
BX279844 leiomyosarcoma, uterus .a 97 to 571 1 to 475       475/475
(100 %)		 0 diff
(100 %id)
CB266190 adipose .a 93 to 743 1 to 650       650/650
(100 %)		 3 diff
(99.6 %id)
CD686519 normal nasopharynx .d 32 to 559 19 to 546       528/546
(96 %)		 10 diff
(98.2 %id)
CD690728 normal nasopharynx .d 45 to 624 31 to 610       580/610
(95 %)		 7 diff
(98.9 %id)
CD700855 normal nasopharynx .d 32 to 582 15 to 565       551/565
(97 %)		 7 diff
(98.8 %id)
BU660041 blood .d 26 to 340 1 to 315       315/315
(100 %)		 3 diff
(99.1 %id)
CN258806 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 218 to 649 1 to 432       432/432
(100 %)		 0 diff
(100 %id)
CN258807 embryonic stem cells, cell lines H1, H7, andH9 .d 56 to 690 1 to 635 exact     635/635
(100 %)		 3 diff
(99.6 %id)
CV026323 mixed .a 153 to 686 1 to 534       534/534
(100 %)		 0 diff
(100 %id)
CV381654 breast_normal .d 713 to 1010 337 to 27     Submitted on the opposite strand 311/337
(92 %)		 0 diff
(100 %id)
CV389587 colon_ins .d 680 to 1162 499 to 10     Submitted on the opposite strand 490/513
(95 %)		 0 diff
(100 %id)
CV391240 nervous_normal .d 687 to 1156 487 to 14     Submitted on the opposite strand 474/487
(97 %)		 0 diff
(100 %id)
CV391253 nervous_normal .d 689 to 1161 492 to 10     Submitted on the opposite strand 483/492
(98 %)		 0 diff
(100 %id)
CV391831 nervous_normal .d 680 to 1162 501 to 8     Submitted on the opposite strand 494/514
(96 %)		 0 diff
(100 %id)
CV391898 nervous_normal .d 758 to 1157 412 to 13     Submitted on the opposite strand 400/412
(97 %)		 0 diff
(100 %id)
CV392037 nervous_normal .d 677 to 1121 16 to 460       445/460
(96 %)		 6 diff
(98.7 %id)
CV392449 nervous_normal .d 680 to 1156 15 to 491       477/491
(97 %)		 7 diff
(98.6 %id)
CV392488 nervous_normal .d 680 to 1156 14 to 491       478/491
(97 %)		 6 diff
(98.8 %id)
CV392504 nervous_normal .d 680 to 1156 1 to 477       477/477
(100 %)		 1 diff
(99.8 %id)
CV392513 nervous_normal .d 730 to 1156 426 to 1     Submitted on the opposite strand 426/426
(100 %)		 2 diff
(99.6 %id)
CV392519 nervous_normal .d 680 to 1156 477 to 1     Submitted on the opposite strand 477/491
(97 %)		 4 diff
(99.2 %id)
CV392598 nervous_normal .d 767 to 1155 393 to 1     Submitted on the opposite strand 393/393
(100 %)		 14 diff
(96.5 %id)
CV392606 nervous_normal .d 678 to 1154 15 to 496       482/496
(97 %)		 32 diff
(93.6 %id)
CV392692 nervous_normal .d 752 to 1156 1 to 405       405/405
(100 %)		 4 diff
(99.1 %id)
CV392830 nervous_normal .d 680 to 1156 477 to 1     Submitted on the opposite strand 477/492
(96 %)		 2 diff
(99.6 %id)
CV392845 nervous_normal .d 680 to 1156 477 to 1     Submitted on the opposite strand 477/491
(97 %)		 5 diff
(99.0 %id)
CV392956 nervous_normal .d 707 to 1121 1 to 420       420/420
(100 %)		 17 diff
(96.0 %id)
CV393148 nervous_normal .d 681 to 1162 1 to 482       482/490
(98 %)		 8 diff
(98.4 %id)
CV393149 nervous_normal .d 680 to 1156 16 to 491       476/491
(96 %)		 6 diff
(98.8 %id)
CV393151 nervous_normal .d 680 to 1156 477 to 1     Submitted on the opposite strand 477/503
(94 %)		 1 diff
(99.9 %id)
CV393221 nervous_normal .d 680 to 1156 477 to 1     Submitted on the opposite strand 477/477
(100 %)		 4 diff
(99.2 %id)
EC527939 Prostate .a 1194 to 1300 13 to 116       104/116
(89 %)		 6 diff
(94.9 %id)
FN070052 breast carcinoma .a 726 to 807 1 to 82       82/83
(98 %)		 1 diff
(98.8 %id)
FN101014 breast carcinoma .g 280 to 371 1 to 93       93/93
(100 %)		 5 diff
(94.7 %id)
FN166080 breast carcinoma .a 634 to 735 10 to 110       101/110
(91 %)		 6 diff
(94.6 %id)
DB442554 testis .d 12 to 465 1 to 454       454/454
(100 %)		 0 diff
(100 %id)
DB507406 testis .a 921 to 1329 1 to 409     Submitted on the opposite strand 409/409
(100 %)		 0 diff
(100 %id)
BP252299 Kidney .d 32 to 614 1 to 582       582/582
(100 %)		 1 diff
(99.9 %id)
AV723693 hypothalamus .f 1 to 634 1 to 634 exact tiling clone,   634/699
(90 %)		 7 diff
(99.0 %id)
R17249 whole brain .c 91 to 303 1 to 213       213/213
(100 %)		 3 diff
(98.6 %id)
R41861 whole brain .c 1078 to 1343 279 to 12   tiling clone, AAA   268/272
(98 %)		 2 diff
(99.3 %id)
R35096 whole brain .a 136 to 497 1 to 371       371/387
(95 %)		 16 diff
(95.9 %id)
R49483 whole brain .a 980 to 1329 375 to 13   AAA   363/392
(92 %)		 16 diff
(96.0 %id)
N79472 lung .a 1038 to 1329 309 to 18   AAA   292/292
(100 %)		 0 diff
(100 %id)
AA586903 larynx .a 846 to 1329 484 to 1       484/484
(100 %)		 0 diff
(100 %id)
AA766727 germinal center B cell .a 896 to 1324 446 to 17   AAA   430/433
(99 %)		 6 diff
(98.7 %id)
AA832500 carcinoid, lung .a 897 to 1329 445 to 13   AAA   433/433
(100 %)		 0 diff
(100 %id)
AA932097 carcinoid, lung .a 746 to 1249 504 to 1       504/504
(100 %)		 0 diff
(100 %id)
AA994242 pooled .a 1064 to 1327 264 to 1       264/264
(100 %)		 0 diff
(100 %id)
AI242121 pooled .a 934 to 1327 394 to 1       394/394
(100 %)		 2 diff
(99.5 %id)
AI299165 carcinoid, lung .a 897 to 1331 438 to 4       435/438
(99 %)		 0 diff
(100 %id)
AI288118 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 1030 to 1325 332 to 37   AAA   296/296
(100 %)		 10 diff
(96.7 %id)
AI432672 Kidney .a 932 to 1329 482 to 85   AAA   398/400
(99 %)		 0 diff
(100 %id)
AI446189 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 848 to 1329 482 to 1       482/484
(99 %)		 1 diff
(99.8 %id)
AI638002 pooled germ cell tumors .a 1069 to 1329 261 to 1       261/261
(100 %)		 0 diff
(100 %id)
AW194199 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 1253 to 1329 87 to 11   AAA   77/77
(100 %)		 0 diff
(100 %id)
AW303298 pooled .a 678 to 1331 655 to 3       653/655
(99 %)		 0 diff
(100 %id)
AW440443 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 824 to 1326 503 to 1       503/503
(100 %)		 0 diff
(100 %id)
CF137683 lymph .a 171 to 686 1 to 515       515/515
(100 %)		 4 diff
(99.3 %id)
BE379209 endometrium, adenocarcinoma cell line, uterus .a 99 to 764 1 to 664       664/666
(99 %)		 10 diff
(98.5 %id)
BG108422 Bone, osteosarcoma, cell line .a 840 to 1158 28 to 346       319/346
(92 %)		 6 diff
(98.3 %id)
BM460682 leiomyosarcoma, uterus .a 99 to 1067 1 to 989       989/1031
(95 %)		 37 diff
(96.5 %id)
BQ056457 lymph, lymphoma, cell line .a 105 to 825 1 to 729       729/1093
(66 %)		 20 diff
(98.2 %id)
CA453903   .a 68 to 931 27 to 895       869/897
(96 %)		 15 diff
(98.4 %id)
CX865974 embryonic stem .b 1 to 759 1 to 759 exact tiling clone,   759/759
(100 %)		 0 diff
(100 %id)
CX870913 embryonic stem .d 1 to 740 1 to 740 exact tiling clone,   740/740
(100 %)		 1 diff
(99.9 %id)
BP268437 thyroid .d 249 to 806 1 to 558       558/558
(100 %)		 1 diff
(99.9 %id)
CB118492 Liver .a 124 to 714 1 to 591       591/591
(100 %)		 0 diff
(100 %id)
CB123283 Liver .a 124 to 669 1 to 546       546/546
(100 %)		 0 diff
(100 %id)
CB158915 Liver .e 1 to 532 1 to 532 exact tiling clone,   532/532
(100 %)		 0 diff
(100 %id)
DR423663 eye, Pterygium .a 62 to 875 1 to 814       814/814
(100 %)		 3 diff
(99.7 %id)
NM_025231.1   .a 53 to 1325 1 to 1273 exact RefSeq, AAA   1273/1273
(100 %)		 0 diff
(100 %id)
DA798829 brain .d 42 to 582 2 to 542   capped   541/541
(100 %)		 0 diff
(100 %id)
DA805546 brain .d 33 to 605 2 to 574   capped   573/573
(100 %)		 0 diff
(100 %id)
TI_1948122178   .a 143 to 1203 130 to 1184 E261R K262E P263A Y264L K265* fully sequenced,   1055/1184
(89 %)		 50 diff
(95.8 %id)
TI_1948122179   .a 594 to 1198 728 to 124   fully sequenced,   605/728
(83 %)		 0 diff
(100 %id)
TI_1948122353   .c 99 to 1155 129 to 1180 C177D L178K L179T L180R K181T ... tiling clone, fully sequenced,   1052/1180
(89 %)		 62 diff
(94.8 %id)
TI_1948122354   .c 550 to 1212 727 to 123   tiling clone, fully sequenced,   605/727
(83 %)		 0 diff
(100 %id)
TI_1948122529   .a 143 to 624 121 to 601   fully sequenced,   481/601
(80 %)		 6 diff
(99.1 %id)
TI_1948122530   .a 594 to 1198 730 to 126   fully sequenced,   605/730
(82 %)		 0 diff
(100 %id)
TI_1948122695   .a 153 to 824 132 to 809   fully sequenced,   678/809
(83 %)		 14 diff
(98.3 %id)
TI_1948122696   .a 794 to 1204 530 to 120   fully sequenced,   411/530
(77 %)		 5 diff
(99.1 %id)
DN998151 breast cancer, Mammary gland (cancer tissue) .a 7 to 653 1 to 647       647/647
(100 %)		 5 diff
(99.3 %id)
BE243416 leukopheresis .a 1053 to 1325 273 to 1       273/273
(100 %)		 3 diff
(99.0 %id)
BE244328 leukopheresis .a 3 to 370 1 to 368       368/368
(100 %)		 5 diff
(98.7 %id)
DB158261 thymus .a 1 to 600 2 to 601   tiling clone, capped   600/600
(100 %)		 0 diff
(100 %id)
DB158416 thymus .d 24 to 604 2 to 582   capped   581/581
(100 %)		 1 diff
(99.9 %id)
DB164080 thymus .d 33 to 596 2 to 565   capped   564/564
(100 %)		 1 diff
(99.9 %id)
TI_149292773   .b 586 to 1278 779 to 87   tiling clone, AAA   693/694
(99 %)		 2 diff
(99.8 %id)
TI_154167220   .d 158 to 789 80 to 718       639/768
(83 %)		 21 diff
(97.3 %id)
DB217342 trachea .a 91 to 660 2 to 571   capped   570/570
(100 %)		 1 diff
(99.9 %id)
BM974835 lung .a 674 to 1329 670 to 15   AAA   656/656
(100 %)		 2 diff
(99.7 %id)
CA442388 Fibrosarcoma .a 674 to 1327 672 to 18   AAA   655/655
(100 %)		 1 diff
(99.9 %id)
CA306342 Alveolar Macrophage, lung .a 598 to 1334 755 to 19   AAA   737/737
(100 %)		 0 diff
(100 %id)
TI_1948122696   .a 794 to 1204 530 to 120   fully sequenced,   411/530
(77 %)		 5 diff
(99.1 %id)
DN998151 breast cancer, Mammary gland (cancer tissue) .a 7 to 653 1 to 647       647/647
(100 %)		 5 diff
(99.3 %id)
DN998151 TC110513 ZSCAN16.aAug10 653 647 TC110513     647 5
BE243416 TCBAP0352 ZSCAN16.aAug10 1325 1 TCBAP0352     273 3
BE244328 TCBAP0352__1 ZSCAN16.aAug10 370 368 TCBAP0352__1     368 5
DB158261 THYMU3037608 ZSCAN16.aAug10 600 601 THYMU3037608     600 0
DB158416 THYMU3037824 ZSCAN16.dAug10 604 582 THYMU3037824     581 1
DB164080 THYMU3045626 ZSCAN16.dAug10 596 565 THYMU3045626     564 1
TI_149292773 TI_149292773 ZSCAN16.bAug10 1278 87 TI_149292773     693 2
TI_154167220 TI_154167220 ZSCAN16.dAug10 789 718 TI_154167220     639 21
DB217342 TRACH3006693 ZSCAN16.aAug10 660 571 TRACH3006693     570 1
BM974835 UI-CF-EC1-acd-o-18-0-UI ZSCAN16.aAug10 1329 15 UI-CF-EC1-acd-o-18-0-UI     656 2
CA442388 UI-H-DP0-avf-p-16-0-UI ZSCAN16.aAug10 1327 18 UI-H-DP0-avf-p-16-0-UI     655 1
CA306342 UI-H-FT1-bhv-j-10-0-UI ZSCAN16.aAug10 1334 19 UI-H-FT1-bhv-j-10-0-UI     737 0
CA306342 UI-H-FT1-bhv-j-10-0-UI ZSCAN16.aAug10 1334 19 UI-H-FT1-bhv-j-10-0-UI     737 0
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI