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Gene ZNF354ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
95 supporting clones for gene ZNF354A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF116030   .a 1 to 2487 1 to 2499 exact tiling clone, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 2499/2499
(100 %)
12 diff
(99.6 %id)
NM_005649.2   .a 7 to 2561 1 to 2555 exact RefSeq,   2555/2555
(100 %)
0 diff
(100 %id)
AL534510 brain, fetal brain .a 8 to 834 1 to 826       826/826
(100 %)
3 diff
(99.7 %id)
TI_44344062   .a 46 to 824 89 to 867       779/867
(89 %)
7 diff
(99.2 %id)
BC047105 Brain, hypothalamus .a 50 to 2486 1 to 2437 R299S available from MGC, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 2437/2438
(99 %)
6 diff
(99.8 %id)
DB482087 hippocampus .a 50 to 540 1 to 491       491/491
(100 %)
2 diff
(99.6 %id)
BP360545 thalamus .a 50 to 631 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BI462735 testis .a 52 to 824 1 to 781   available from MGC,   781/781
(100 %)
28 diff
(96.5 %id)
D89928 fetal brain .a 53 to 2487 1 to 2435 F437Y     2435/2435
(100 %)
6 diff
(99.8 %id)
BC036517 testis .a 57 to 2489 6 to 2436 A147H T148P H149Q K151N I152P ... available from MGC, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 2431/2431
(100 %)
2 diff
(100.0 %id)
DB442592 testis .a 60 to 509 1 to 449       449/449
(100 %)
13 diff
(97.2 %id)
AL556958 T cells (Jurkat cell line), T cells from T cell leukemia .a 64 to 1076 1 to 997       997/997
(100 %)
20 diff
(98.0 %id)
DB486433 hypothalamus .a 65 to 485 1 to 421       421/421
(100 %)
2 diff
(99.6 %id)
DB495079 hypothalamus .a 65 to 558 1 to 494       494/494
(100 %)
1 diff
(99.8 %id)
AW631082 2 pooled high-grade transitional celltumors, genitourinary tract .a 84 to 578 1 to 494       494/496
(99 %)
17 diff
(96.6 %id)
BU536772 mixed (pool of 40 RNAs) .a 109 to 661 1 to 558       558/861
(64 %)
14 diff
(98.4 %id)
AK290711 lung .a 112 to 2459 1 to 2348 F475S tiling clone,   2348/2348
(100 %)
2 diff
(100.0 %id)
DA590612 lung .a 113 to 666 2 to 559   capped   558/560
(99 %)
5 diff
(99.2 %id)
CV569559 cornea, eye .a 118 to 603 1 to 486       486/486
(100 %)
0 diff
(100 %id)
BF898679 marrow .a 137 to 461 343 to 19     Submitted on the opposite strand 325/357
(91 %)
3 diff
(99.2 %id)
BQ892897 dorsal root ganglia .a 145 to 1060 1 to 924       924/935
(98 %)
35 diff
(96.3 %id)
DN993525 brain, whole brain .a 149 to 887 8 to 749       746/749
(99 %)
8 diff
(99.0 %id)
TI_1948157006   .a 196 to 1125 127 to 1038   fully sequenced,   912/1038
(87 %)
14 diff
(98.7 %id)
TI_1948157157   .a 196 to 1120 128 to 1044   fully sequenced,   917/1044
(87 %)
17 diff
(98.4 %id)
TI_1948157318   .a 196 to 1195 130 to 1112   fully sequenced,   983/1112
(88 %)
22 diff
(98.1 %id)
TI_1948157481   .a 196 to 1204 127 to 1123   fully sequenced,   997/1123
(88 %)
23 diff
(98.0 %id)
EL733960 mixed .a 205 to 823 1 to 619       619/623
(99 %)
2 diff
(99.7 %id)
BX477264   .a 322 to 923 1 to 602       602/602
(100 %)
3 diff
(99.6 %id)
BU198848   .a 342 to 764 1 to 423       423/423
(100 %)
5 diff
(98.9 %id)
DB180710 kidney, tumor tissue .a 388 to 954 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
BF088769 head_neck .a 426 to 565 142 to 2       141/143
(98 %)
2 diff
(98.7 %id)
BG184462   .a 458 to 1231 1 to 771       771/773
(99 %)
15 diff
(98.1 %id)
DA578896   .a 568 to 1125 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
DN949667 Islets of Langerhans, Pancreas .a 637 to 944 1 to 308       308/308
(100 %)
0 diff
(100 %id)
EC551327 Prostate .a 693 to 803 1 to 109       109/109
(100 %)
2 diff
(98.2 %id)
BG122268 adenocarcinoma, cell line, Liver .a 854 to 1596 1 to 754       754/1022
(73 %)
16 diff
(98.5 %id)
R23489 placenta .a 916 to 1321 1 to 416       416/417
(99 %)
28 diff
(93.3 %id)
BX098612 placenta .a 917 to 1626 1 to 710       710/710
(100 %)
0 diff
(100 %id)
CR595568 fetal brain .a 926 to 2496 1 to 1571   tiling clone,   1571/1571
(100 %)
0 diff
(100 %id)
AL535717 brain, fetal brain .a 926 to 1800 1 to 874   fully sequenced,   874/874
(100 %)
1 diff
(99.9 %id)
CN293695 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 932 to 1656 1 to 723       723/723
(100 %)
7 diff
(99.1 %id)
BQ953573 sciatic nerve .a 943 to 1678 1 to 741   AAA   741/1122
(66 %)
25 diff
(97.8 %id)
CN293696 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 995 to 1587 1 to 593       593/593
(100 %)
1 diff
(99.9 %id)
BG113156 Bone, osteosarcoma, cell line .a 1007 to 1803 12 to 810       799/982
(81 %)
36 diff
(96.4 %id)
BG029938 breast, mammary adenocarcinoma, cell line .a 1064 to 1736 1 to 674       674/736
(91 %)
7 diff
(99.1 %id)
TI_1948157158   .a 1090 to 2027 1063 to 122   fully sequenced,   942/1063
(88 %)
18 diff
(98.4 %id)
TI_1948157007   .a 1095 to 2027 1055 to 121   fully sequenced,   935/1055
(88 %)
14 diff
(98.7 %id)
BE781440 eye, retinoblastoma .a 1112 to 1886 1 to 770       770/869
(88 %)
20 diff
(97.7 %id)
TI_1948157319   .a 1165 to 2027 986 to 120   fully sequenced,   867/986
(87 %)
13 diff
(98.7 %id)
TI_1948157482   .a 1174 to 2027 981 to 118   fully sequenced,   864/981
(88 %)
15 diff
(98.5 %id)
BU933509 mixed (pool of 40 RNAs) .a 1316 to 2097 1 to 788       788/788
(100 %)
13 diff
(98.4 %id)
TI_57172016   .a 1403 to 2108 26 to 730       705/730
(96 %)
6 diff
(99.2 %id)
BI827649 brain, medulla .a 1405 to 2108 1 to 703       703/703
(100 %)
2 diff
(99.8 %id)
AL579077 T cells (Jurkat cell line), T cells from T cell leukemia .a 1434 to 2441 993 to 1       993/1000
(99 %)
62 diff
(93.8 %id)
AA213551   .a 1454 to 1682 1 to 230       230/232
(99 %)
4 diff
(98.3 %id)
CB136157 Liver .a 1456 to 2009 1 to 554       554/554
(100 %)
1 diff
(99.9 %id)
BU569320 testis .a 1503 to 2282 1 to 786       786/787
(99 %)
19 diff
(97.6 %id)
CB115785 Liver .a 1528 to 2081 1 to 554       554/554
(100 %)
1 diff
(99.9 %id)
CN293697 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1559 to 2119 1 to 562       562/562
(100 %)
1 diff
(99.9 %id)
BX399786 Placenta Cot 25-normalized .a 1563 to 2484 966 to 43       924/1020
(90 %)
0 diff
(100 %id)
AA046794 uterus .a 1591 to 2130 1 to 551   fully sequenced, Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 551/551
(100 %)
14 diff
(97.5 %id)
AL534509 brain, fetal brain .a 1673 to 2512 859 to 22       838/859
(97 %)
0 diff
(100 %id)
CA442331 Fibrosarcoma .a 1687 to 2483 815 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 797/797
(100 %)
0 diff
(100 %id)
BQ269874 Pancreas, Purified pancreatic islet .a 1716 to 2114 36 to 434   fully sequenced,   399/434
(91 %)
5 diff
(98.9 %id)
AJ715055 bone marrow .a 1718 to 2160 1 to 442       442/442
(100 %)
3 diff
(99.4 %id)
AW190144 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 1759 to 2488 734 to 3       732/741
(98 %)
0 diff
(100 %id)
AL566023 brain, fetal brain .a 1770 to 2495 728 to 1   fully sequenced,   728/728
(100 %)
13 diff
(98.3 %id)
BF679734 Prostate .a 1793 to 2425 1 to 625       625/853
(73 %)
14 diff
(98.4 %id)
AA809210 Ewing's sarcoma .a 1806 to 2251 1 to 445       445/445
(100 %)
7 diff
(98.5 %id)
AI800607 pooled .a 1828 to 2488 669 to 8       662/669
(98 %)
0 diff
(100 %id)
AA886365 Kidney .a 1894 to 2487 607 to 1       607/607
(100 %)
15 diff
(97.6 %id)
BE620991 epithelioid carcinoma, Pancreas .a 1915 to 2477 1 to 564       564/596
(94 %)
9 diff
(98.5 %id)
AI802440   .a 1922 to 2459 561 to 26   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 536/537
(99 %)
16 diff
(97.1 %id)
DN916925   .a 1926 to 2487 574 to 1       574/574
(100 %)
7 diff
(98.8 %id)
AA824262   .a 1929 to 2485 561 to 5       557/561
(99 %)
0 diff
(100 %id)
AW975414   .a 1961 to 2485 607 to 83     Submitted on the opposite strand 525/609
(86 %)
0 diff
(100 %id)
DB550949 hippocampus .a 1974 to 2486 1 to 513     Submitted on the opposite strand 513/514
(99 %)
2 diff
(99.7 %id)
BU533883 mixed (pool of 40 RNAs) .a 1997 to 2554 1 to 559   AAA   559/563
(99 %)
5 diff
(99.2 %id)
CK819075 Islets of Langerhans, Pancreas .a 2007 to 2489 483 to 1       483/494
(97 %)
0 diff
(100 %id)
CK819076 Islets of Langerhans, Pancreas .a 2008 to 2489 1 to 482   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 482/482
(100 %)
0 diff
(100 %id)
AA213459   .a 2013 to 2487 490 to 1       490/517
(94 %)
6 diff
(98.9 %id)
BM126520 Islets of Langerhans, Pancreas .a 2024 to 2423 1 to 400       400/400
(100 %)
4 diff
(99.0 %id)
DB555425 hypothalamus .a 2028 to 2487 1 to 460     Submitted on the opposite strand 460/460
(100 %)
3 diff
(99.4 %id)
DB566123 hypothalamus .a 2029 to 2487 1 to 459     Submitted on the opposite strand 459/459
(100 %)
0 diff
(100 %id)
R26082 placenta .a 2051 to 2483 438 to 1       438/438
(100 %)
11 diff
(97.5 %id)
BQ286531 Pancreas, Purified pancreatic islet .a 2084 to 2486 403 to 1   fully sequenced,   403/403
(100 %)
0 diff
(100 %id)
AA593651 breast .a 2089 to 2487 399 to 1       399/399
(100 %)
0 diff
(100 %id)
DB507457 testis .a 2091 to 2489 1 to 399     Submitted on the opposite strand 399/399
(100 %)
0 diff
(100 %id)
BG499165 adenocarcinoma, Prostate .a 2091 to 2545 213 to 679       653/957
(68 %)
52 diff
(94.6 %id)
BM126209 Islets of Langerhans, Pancreas .a 2096 to 2489 393 to 1       393/393
(100 %)
3 diff
(99.3 %id)
AA046683 uterus .a 2100 to 2487 427 to 25   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 403/403
(100 %)
10 diff
(97.6 %id)
AA912850 pooled .a 2105 to 2488 386 to 3       384/386
(99 %)
0 diff
(100 %id)
TI_149304528   .a 2110 to 2559 532 to 83   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 450/963
(46 %)
0 diff
(100 %id)
BU685427 lung, Primary Lung Epithelial Cells .a 2110 to 2559 461 to 12   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 450/457
(98 %)
0 diff
(100 %id)
AA926914 pooled .a 2200 to 2484 286 to 1       286/286
(100 %)
1 diff
(99.7 %id)
AI374958   .a 2262 to 2490 236 to 8       229/236
(97 %)
0 diff
(100 %id)
AA731931 germinal center B cell .a 2265 to 2558 297 to 4       294/297
(98 %)
0 diff
(100 %id)
CR748624 B-cell, chronic lymphotic leukemia .a 2284 to 2554 1 to 271       271/271
(100 %)
0 diff
(100 %id)
AK128881 Spleen .b-u 1 to 622 2 to 624   tiling clone, available from FLJ,   624/624
(100 %)
8 diff
(98.8 %id)
DA942588 Spleen .b-u 1 to 598 2 to 600   capped   599/599
(100 %)
8 diff
(98.7 %id)
CB960472 Human Placenta, placenta .b-u 95 to 663 21 to 595 K155E P156T R157P L158S Y159L tiling clone,   575/741
(77 %)
6 diff
(99.2 %id)
BG109817 Bone, osteosarcoma, cell line .b-u 122 to 642 1 to 518 P9L A42R R44A S45L L46P ... tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 518/518
(100 %)
9 diff
(98.3 %id)
DA491076 brain .b-u 567 to 1093 2 to 530   tiling clone, capped   529/529
(100 %)
3 diff
(99.5 %id)
DB017373 esophageal, tumor tissue .c 1 to 563 2 to 564 exact tiling clone, capped   565/565
(100 %)
0 diff
(100 %id)
BI667692 brain, hypothalamus Gene ZNF354A, variant not shown         This clone was ignored    
DB055918 testis Gene ZNF354A, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b-u, .c Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI