To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene ZSCAN20TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
49 supporting clones for gene ZSCAN20 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC377329 brain .a 1 to 565 1 to 565   tiling clone,   565/565
(100 %)
0 diff
(100 %id)
NM_145238.3   .a 41 to 4256 1 to 4216 Y432D RefSeq, AAA   4216/4216
(100 %)
1 diff
(100.0 %id)
AK131405   .a 55 to 3516 1 to 3462 Y432D C740R tiling clone, available from FLJ,   3462/3462
(100 %)
4 diff
(99.9 %id)
DA554765   .a 56 to 585 2 to 531   capped   530/530
(100 %)
0 diff
(100 %id)
AL705683 human skeletal muscle .a 60 to 643 1 to 584       578/584
(98 %)
8 diff
(98.7 %id)
BE780719 eye, retinoblastoma .a 97 to 705 13 to 620   available from MGC,   608/620
(98 %)
6 diff
(99.1 %id)
CV029873 mixed .a 208 to 812 1 to 605       605/652
(92 %)
2 diff
(99.7 %id)
TI_1948129153   .a 208 to 604 130 to 526       397/1097
(36 %)
4 diff
(99.7 %id)
TI_1948129155   .a 973 to 1678 825 to 120       706/1408
(50 %)
0 diff
(100 %id)
TI_1948128484   .a 977 to 1678 826 to 123       704/1099
(64 %)
0 diff
(100 %id)
BF943925 nervous_normal .a 1887 to 2039 154 to 4     Submitted on the opposite strand 151/154
(98 %)
0 diff
(100 %id)
BF204264 muscle, rhabdomyosarcoma .a 2496 to 3184 1 to 687       687/1021
(67 %)
22 diff
(97.9 %id)
BF305670 muscle, rhabdomyosarcoma .a 2496 to 3009 1 to 521       521/532
(97 %)
15 diff
(97.2 %id)
BM699439 eye, fetal eyes .a 2573 to 3194 1 to 622   fully sequenced,   622/622
(100 %)
0 diff
(100 %id)
BI257872 cervical carcinoma cell line, cervix .a 2769 to 3562 1 to 792       792/834
(94 %)
5 diff
(99.5 %id)
X52360 lymphoid .a 2830 to 2997 1 to 168       168/168
(100 %)
0 diff
(100 %id)
BF364306 nervous_normal .a 2949 to 3225 1 to 276       276/287
(96 %)
9 diff
(96.9 %id)
BF741045 bocio_tumor .a 2987 to 3323 348 to 12     Submitted on the opposite strand 337/348
(96 %)
0 diff
(100 %id)
AI699720 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 3157 to 3516 362 to 1   tiling clone,   362/362
(100 %)
6 diff
(98.4 %id)
BM670086 eye, fetal eyes .a 3164 to 3511 366 to 19   fully sequenced, AAA   348/348
(100 %)
1 diff
(99.8 %id)
DB318451   .a 3234 to 3516 285 to 1       285/285
(100 %)
3 diff
(99.0 %id)
BX099906 pooled germ cell tumors .a 3482 to 3844 1 to 363   tiling clone,   363/363
(100 %)
0 diff
(100 %id)
AI651390 pooled germ cell tumors .a 3687 to 4254 578 to 11   tiling clone, AAA   568/568
(100 %)
0 diff
(100 %id)
BF508465   .a 3918 to 4254 354 to 18   AAA   337/337
(100 %)
1 diff
(99.8 %id)
GD139620   .a 4147 to 4363 1 to 217   tiling clone, AAA   217/217
(100 %)
1 diff
(99.6 %id)
DC336055 hippocampus .b 1 to 585 1 to 585   tiling clone,   585/585
(100 %)
1 diff
(99.9 %id)
BP250835 hippocampus .b 16 to 596 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BP251232 hippocampus .b 16 to 598 1 to 583   tiling clone,   583/583
(100 %)
0 diff
(100 %id)
AK290195 thalamus .b 21 to 3423 1 to 3403 L100P V126M Y432D tiling clone,   3403/3403
(100 %)
5 diff
(99.9 %id)
DC343113 thalamus .b 21 to 588 1 to 568       568/568
(100 %)
2 diff
(99.7 %id)
DB230695 trachea .b 21 to 622 2 to 603   capped   602/602
(100 %)
2 diff
(99.7 %id)
DB238196 trachea .b 24 to 614 2 to 595   capped   594/594
(100 %)
4 diff
(99.4 %id)
DA756746   .b 39 to 538 2 to 501   capped   500/500
(100 %)
1 diff
(99.8 %id)
BC011404 Eye, retinoblastoma .c 1 to 2337 1 to 2338 Y378D tiling clone, available from MGC, AAA   2338/2351
(99 %)
11 diff
(99.6 %id)
TI_1948128147   .c 132 to 1049 128 to 1053       926/1119
(82 %)
37 diff
(96.7 %id)
TI_1948128481   .c 132 to 907 131 to 898       768/1138
(67 %)
39 diff
(96.6 %id)
TI_1948128482   .c 132 to 1044 127 to 1048       922/1137
(81 %)
35 diff
(97.0 %id)
TI_1948128823   .c 132 to 855 124 to 842       719/1116
(64 %)
32 diff
(97.2 %id)
TI_1948128824   .c 132 to 1006 127 to 1012       886/1163
(76 %)
27 diff
(97.7 %id)
TI_1948129154   .c 132 to 982 136 to 996       861/1195
(72 %)
42 diff
(96.5 %id)
TI_1948128148   .c 548 to 1440 1013 to 122       892/1454
(61 %)
18 diff
(98.8 %id)
TI_1948128825   .c 548 to 1440 1014 to 118       897/1444
(62 %)
29 diff
(98.0 %id)
TI_1948128483   .c 585 to 1440 977 to 119       859/1366
(62 %)
28 diff
(98.0 %id)
AA147828   .c 1060 to 1556 1 to 495       495/495
(100 %)
3 diff
(99.4 %id)
AA147768   .c 1932 to 2487 545 to 1   tiling clone,   545/629
(86 %)
21 diff
(96.7 %id)
AI828405 adenocarcinoma, Pancreas .c 2068 to 2493 426 to 1   tiling clone,   426/426
(100 %)
2 diff
(99.6 %id)
BX460425 brain, fetal brain .d 1 to 880 1 to 881 W37X G46X S50I R51P Q52P ... tiling clone,   881/881
(100 %)
1 diff
(99.9 %id)
BP286712 lung .e 1 to 582 1 to 582 E119X tiling clone,   582/582
(100 %)
0 diff
(100 %id)
BP281004   .f 1 to 583 1 to 583 exact tiling clone,   583/583
(100 %)
0 diff
(100 %id)
BC008827 Muscle, rhabdomyosarcoma Gene ZSCAN20, variant not shown       available from MGC, AAA This clone was ignored    
EL733288 mixed Gene ZSCAN20, variant not shown         This clone was ignored    
BF204324 muscle, rhabdomyosarcoma Gene ZSCAN20, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI