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Gene ZKSCAN4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
119 supporting clones for gene ZKSCAN4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA383160 thalamus .a -9 to 545 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DA505935 brain .a 1 to 559 5 to 566   capped   565/565
(100 %)
5 diff
(99.2 %id)
DA607022   .a 1 to 552 5 to 556   capped   555/555
(100 %)
3 diff
(99.5 %id)
DA722289   .a 1 to 576 5 to 580   capped   579/579
(100 %)
2 diff
(99.7 %id)
DA791963 brain .a 1 to 452 5 to 456   capped   455/455
(100 %)
1 diff
(99.8 %id)
DA816260   .a 1 to 556 5 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB168492 kidney, tumor tissue .a 1 to 567 4 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
AK315783 trachea .a 1 to 1923 2 to 1924 exact     1924/1924
(100 %)
0 diff
(100 %id)
AY781778   .a 1 to 2408 2 to 2409 exact tiling clone, AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 2409/2409
(100 %)
0 diff
(100 %id)
BP278401   .a 1 to 583 2 to 584       584/584
(100 %)
1 diff
(99.9 %id)
BP357546 mammary gland .a 1 to 581 2 to 583       583/583
(100 %)
7 diff
(98.8 %id)
DA026982   .a 1 to 568 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA438024 tongue, tumor tissue .a 1 to 531 2 to 532   capped   531/531
(100 %)
3 diff
(99.5 %id)
DA466619 cord Blood .a 1 to 456 2 to 457   capped   456/456
(100 %)
2 diff
(99.6 %id)
DA489691 brain .a 1 to 585 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
DA577996   .a 1 to 557 2 to 558   capped   557/557
(100 %)
2 diff
(99.7 %id)
DA773566 brain .a 1 to 578 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DA945536 Spleen .a 1 to 569 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
DB231963 trachea .a 1 to 452 2 to 453   capped   452/452
(100 %)
0 diff
(100 %id)
BP289716 lung .a 3 to 586 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DA199437 brain .a 4 to 487 2 to 485   capped   484/484
(100 %)
3 diff
(99.4 %id)
DA439750 tongue, tumor tissue .a 4 to 590 2 to 588   capped   587/587
(100 %)
2 diff
(99.7 %id)
DA612049   .a 4 to 557 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA722342   .a 4 to 585 2 to 583   capped   582/582
(100 %)
2 diff
(99.7 %id)
DA806540 brain .a 4 to 569 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA817543   .a 4 to 567 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DB179144 kidney, tumor tissue .a 4 to 510 2 to 509   capped   508/508
(100 %)
1 diff
(99.9 %id)
DA867034 Prostate .a 7 to 558 2 to 553   capped   552/552
(100 %)
2 diff
(99.7 %id)
CV569798 cornea, eye .a 17 to 625 1 to 609       609/609
(100 %)
2 diff
(99.7 %id)
CR625010 HeLa cells Cot 25-normalized .a 23 to 2380 1 to 2358 exact     2358/2358
(100 %)
0 diff
(100 %id)
AL555537 placenta .a 23 to 917 1 to 893       893/893
(100 %)
5 diff
(99.5 %id)
DA815442   .a 29 to 593 2 to 566   capped   565/565
(100 %)
3 diff
(99.5 %id)
DA746691   .a 33 to 581 2 to 550   capped   549/550
(99 %)
3 diff
(99.5 %id)
DA736297   .a 39 to 725 2 to 690   capped   689/689
(100 %)
7 diff
(99.0 %id)
DA747940   .a 39 to 597 2 to 560   capped   559/559
(100 %)
3 diff
(99.5 %id)
BF975579 B-cells, primary B-cells from tonsils (cell line) .a 41 to 715 1 to 681       681/756
(90 %)
33 diff
(95.7 %id)
BC014031 Primary B-Cells from Tonsils .a 42 to 2327 1 to 2286 exact available from MGC, AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 2286/2286
(100 %)
0 diff
(100 %id)
NM_019110.3   .a 42 to 2327 1 to 2286 exact RefSeq, AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 2286/2286
(100 %)
0 diff
(100 %id)
AA580988 bulk germ cell seminoma .a 50 to 393 7 to 346       340/346
(98 %)
0 diff
(100 %id)
BG431384 Kidney .a 50 to 801 1 to 751       751/751
(100 %)
4 diff
(99.5 %id)
CN308407 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 51 to 611 1 to 560       560/560
(100 %)
3 diff
(99.5 %id)
BM546455 brain, hippocampus .a 58 to 858 13 to 818       806/1110
(72 %)
14 diff
(98.8 %id)
CN308408 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 139 to 364 1 to 226       226/226
(100 %)
1 diff
(99.6 %id)
BU154576 melanotic melanoma, skin .a 140 to 937 12 to 809       798/878
(90 %)
9 diff
(99.0 %id)
TI_1948137030   .a 280 to 1065 120 to 911       792/1326
(59 %)
26 diff
(98.1 %id)
TI_1948137031   .a 280 to 1249 131 to 1113       983/1262
(77 %)
42 diff
(96.7 %id)
TI_1948137368   .a 280 to 855 117 to 692       576/1259
(45 %)
4 diff
(99.7 %id)
TI_1948137716   .a 280 to 1000 125 to 850       726/1354
(53 %)
20 diff
(98.6 %id)
TI_1948137717   .a 280 to 1355 130 to 1190       1061/1192
(89 %)
58 diff
(95.2 %id)
TI_1948138066   .a 280 to 992 127 to 847       719/1436
(50 %)
18 diff
(98.8 %id)
TI_1948138067   .a 280 to 1223 132 to 1083       952/1222
(77 %)
19 diff
(98.5 %id)
CV028557 mixed .a 286 to 905 1 to 618       618/618
(100 %)
2 diff
(99.7 %id)
BX350505   .a 657 to 1564 905 to 1       881/908
(97 %)
35 diff
(96.2 %id)
AL040316 testis .a 1054 to 1786 1 to 731     Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 731/732
(99 %)
6 diff
(99.2 %id)
F06540 brain, total brain .a 1192 to 1549 1 to 359       359/359
(100 %)
1 diff
(99.8 %id)
T08471   .a 1192 to 1569 1 to 378       378/378
(100 %)
0 diff
(100 %id)
AL555536 placenta .a 1436 to 2380 944 to 1       944/944
(100 %)
5 diff
(99.5 %id)
TI_149290059   .a 1689 to 2385 788 to 92   AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 697/697
(100 %)
2 diff
(99.8 %id)
W01293 melanocyte .a 1706 to 2059 1 to 345   fully sequenced, Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 345/345
(100 %)
1 diff
(99.8 %id)
N44712 melanocyte .a 1732 to 1965 1 to 235       235/235
(100 %)
2 diff
(99.2 %id)
BM973187 lung .a 1745 to 2385 659 to 19   AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 641/641
(100 %)
0 diff
(100 %id)
AW190088 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 1770 to 2416 650 to 4       647/650
(99 %)
0 diff
(100 %id)
AI634553 carcinoid, lung .a 1787 to 2407 616 to 1       616/617
(99 %)
14 diff
(97.8 %id)
BQ002733 Chondrosarcoma, Left Pelvis .a 1797 to 2408 629 to 19   AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 611/611
(100 %)
2 diff
(99.7 %id)
DB368751   .a 1835 to 2408 577 to 1       577/584
(98 %)
17 diff
(97.1 %id)
BE549809 carcinoid, lung .a 1837 to 2407 571 to 1       571/571
(100 %)
1 diff
(99.9 %id)
CA424165 cell lines, Chondrosarcoma .a 1874 to 2391 536 to 19   AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 518/518
(100 %)
0 diff
(100 %id)
AI139333 uterus .a 1908 to 2385 478 to 1       478/478
(100 %)
0 diff
(100 %id)
AI830652 2 pooled tumors (clear cell type), Kidney .a 1920 to 2394 475 to 1       475/475
(100 %)
2 diff
(99.6 %id)
AW135346   .a 1929 to 2399 488 to 18   AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 471/471
(100 %)
0 diff
(100 %id)
BI911600 leukocyte .a 1929 to 2408 24 to 498   AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 475/498
(95 %)
0 diff
(100 %id)
TI_57232971   .a 1929 to 2408 24 to 498   AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 475/498
(95 %)
0 diff
(100 %id)
AL040317 testis .a 1982 to 2408 459 to 39   AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 421/421
(100 %)
19 diff
(95.5 %id)
AI638854 pooled germ cell tumors .a 1988 to 2392 405 to 1       405/405
(100 %)
0 diff
(100 %id)
AW594039 pooled germ cell tumors .a 1988 to 2392 405 to 1       405/405
(100 %)
0 diff
(100 %id)
N67634 melanocyte .a 2029 to 2399 384 to 12   fully sequenced, AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 373/373
(100 %)
3 diff
(99.2 %id)
AW593147 pooled .a 2030 to 2369 340 to 1       340/340
(100 %)
2 diff
(99.5 %id)
N35344 melanocyte .a 2039 to 2399 367 to 7       361/367
(98 %)
0 diff
(100 %id)
AI215747 carcinoid, lung .a 2044 to 2399 357 to 2       356/357
(99 %)
0 diff
(100 %id)
DB205592 trachea .a 2057 to 2625 2 to 570   tiling clone, capped   569/569
(100 %)
1 diff
(99.9 %id)
AI807577 carcinoid, lung .a 2061 to 2407 347 to 1       347/347
(100 %)
4 diff
(98.9 %id)
AI758230 Kidney .a 2080 to 2391 326 to 15   AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 312/312
(100 %)
1 diff
(99.7 %id)
AA580929 bulk germ cell seminoma .a 2082 to 2394 313 to 1       313/313
(100 %)
0 diff
(100 %id)
AA808566 germinal center B cell .a 2137 to 2391 265 to 11   AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 255/255
(100 %)
0 diff
(100 %id)
BQ006541 Chondrosarcoma, Left Pelvis .a 2139 to 2408 288 to 19   AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 270/270
(100 %)
0 diff
(100 %id)
DA089627 cerebellum .a 2338 to 2898 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
BJ997814 Wilms tumor .a 2440 to 2920 1 to 481   tiling clone, fully sequenced,   481/481
(100 %)
2 diff
(99.6 %id)
EH349169   .a 2729 to 2810 1 to 82       82/82
(100 %)
1 diff
(98.8 %id)
F02809 brain, total brain .a 2868 to 3193 326 to 1       326/326
(100 %)
1 diff
(99.7 %id)
T08470   .a 2873 to 3193 321 to 1       321/321
(100 %)
1 diff
(99.7 %id)
BJ997815 Wilms tumor .a 2890 to 3325 436 to 1   tiling clone, fully sequenced,   436/436
(100 %)
0 diff
(100 %id)
AA226879 brain, neuroepithelial cells .a 2990 to 3361 370 to 1   tiling clone,   370/370
(100 %)
2 diff
(99.5 %id)
AK302017 testis .b 1 to 1472 1 to 1472 exact tiling clone,   1472/1472
(100 %)
0 diff
(100 %id)
DC396802 testis .b 1 to 578 1 to 578       578/578
(100 %)
0 diff
(100 %id)
BM554180 brain, medulla .b 86 to 1090 21 to 1026       1006/1026
(98 %)
19 diff
(98.2 %id)
AA333377 Embryo, 8 weeks .b 284 to 619 1 to 340       340/342
(99 %)
5 diff
(98.6 %id)
TI_1948137032   .b 405 to 1274 1000 to 121       880/1089
(80 %)
0 diff
(100 %id)
TI_1948137371   .b 410 to 1274 988 to 125       864/1295
(66 %)
0 diff
(100 %id)
TI_1948137719   .b 413 to 1274 983 to 125       859/1318
(65 %)
0 diff
(100 %id)
TI_1948137718   .b 429 to 1274 976 to 124       853/1089
(78 %)
0 diff
(100 %id)
TI_1948138068   .b 429 to 1274 972 to 123       850/1065
(79 %)
0 diff
(100 %id)
TI_1948137370   .b 432 to 1274 969 to 123       847/1077
(78 %)
0 diff
(100 %id)
TI_1948138069   .b 515 to 1274 896 to 135       762/1424
(53 %)
0 diff
(100 %id)
AW961875   .b 539 to 1128 11 to 600       590/600
(98 %)
0 diff
(100 %id)
BG614793 embryonal carcinoma, testis .b 549 to 1341 1 to 796       796/868
(91 %)
25 diff
(97.2 %id)
TI_1948137033   .b 648 to 1274 748 to 121       628/1384
(45 %)
0 diff
(100 %id)
BI006279 kidney_tumor .b 686 to 1237 559 to 3       557/559
(99 %)
0 diff
(100 %id)
AW868718 stomach_normal .b 823 to 1099 282 to 4       279/294
(94 %)
0 diff
(100 %id)
BF848104 lung_normal .b 1095 to 1414 315 to 1     Submitted on the opposite strand 315/315
(100 %)
5 diff
(98.5 %id)
AA218821 brain, neuroepithelial cells .b 1123 to 1477 1 to 355       355/355
(100 %)
1 diff
(99.8 %id)
BF848087 lung_normal .b 1126 to 1364 1 to 241       241/241
(100 %)
5 diff
(98.0 %id)
DC426763 testis .b 1203 to 1732 530 to 1   tiling clone,   530/530
(100 %)
0 diff
(100 %id)
AK056698   .c-u 1 to 2180 1 to 2180 exact tiling clone, available from FLJ,   2180/2180
(100 %)
2 diff
(100.0 %id)
DA813431   .c-u 2 to 545 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DB327611   .c-u 1634 to 2180 548 to 1       548/548
(100 %)
2 diff
(99.7 %id)
BP370255 testis .d 1 to 560 1 to 560 P68S P150X Q181H tiling clone,   560/560
(100 %)
3 diff
(99.5 %id)
BP225092   .e 1 to 570 11 to 582 G145X K146E I147D C148M H149P ... tiling clone,   575/582
(98 %)
1 diff
(99.9 %id)
DA677150   .f 1 to 596 2 to 598 Q91* tiling clone, capped   597/597
(100 %)
4 diff
(99.4 %id)
DA701380   .g 1 to 475 2 to 476 S33F tiling clone, capped   475/475
(100 %)
2 diff
(99.6 %id)
CN288217 embryonic stem cells, cell lines H1, H7, andH9 .h-u 1 to 546 1 to 546 exact tiling clone,   546/546
(100 %)
0 diff
(100 %id)
DA806450 brain .h-u 231 to 799 2 to 570   tiling clone, capped   569/569
(100 %)
3 diff
(99.5 %id)
DB442167 testis .i 1 to 429 1 to 429 exact tiling clone,   429/429
(100 %)
5 diff
(98.9 %id)
DA363922 subthalamic nucleus .i 181 to 730 2 to 551   tiling clone, capped   550/550
(100 %)
0 diff
(100 %id)
DA010420 adrenal gland .j 1 to 571 2 to 572 exact tiling clone, capped   571/571
(100 %)
0 diff
(100 %id)
DA493283 brain Gene ZKSCAN4, variant not shown       capped      
DA497771 brain Gene ZKSCAN4, variant not shown       capped      
DA822988 pericardium Gene ZKSCAN4, variant not shown       capped      
DN994911 brain, whole brain Gene ZKSCAN4, variant not shown              
DB288010 uterus Gene ZKSCAN4, variant not shown       capped      
DB352883 uterus Gene ZKSCAN4, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d, .e, .f, .g, .h-u, .i, .j Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C