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Gene ZNF30TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
58 supporting clones for gene ZNF30 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_001099438.1   .a 1 to 2653 1 to 2653 exact RefSeq, AAA   2653/2653
(100 %)
0 diff
(100 %id)
DA494465 brain .a 9 to 494 2 to 487   tiling clone, capped   486/486
(100 %)
4 diff
(99.2 %id)
DA499627 brain .a 9 to 563 2 to 556   tiling clone, capped   555/555
(100 %)
5 diff
(99.1 %id)
DA181142 amygdala .a 50 to 617 2 to 569   capped   568/568
(100 %)
6 diff
(99.0 %id)
DA580348   .a 125 to 670 2 to 547   capped   546/546
(100 %)
6 diff
(99.0 %id)
DA915094   .a 143 to 699 2 to 559   capped   558/558
(100 %)
6 diff
(99.0 %id)
DA554380   .a 148 to 712 2 to 567   tiling clone, capped   566/566
(100 %)
7 diff
(98.8 %id)
DB318997   .a 2115 to 2646 532 to 1   tiling clone,   532/532
(100 %)
1 diff
(99.9 %id)
DC314501 amygdala .b 1 to 584 1 to 586   tiling clone,   586/587
(99 %)
4 diff
(99.4 %id)
DC352784 brain .b 1 to 561 1 to 561       561/561
(100 %)
1 diff
(99.9 %id)
NM_001099437.1   .b 1 to 2587 1 to 2587 exact RefSeq, AAA   2587/2587
(100 %)
0 diff
(100 %id)
DC319817 brain .b 6 to 590 1 to 585       585/585
(100 %)
1 diff
(99.9 %id)
BC142996 Clones donated by RIKEN .b 16 to 2580 1 to 2565 T493A tiling clone, AAA   2565/2565
(100 %)
2 diff
(100.0 %id)
DB448534 testis .b 16 to 723 1 to 707       707/709
(99 %)
3 diff
(99.6 %id)
DC353165 brain .b 49 to 610 1 to 562       562/562
(100 %)
3 diff
(99.5 %id)
DC426067 brain .b 2040 to 2580 541 to 1       541/541
(100 %)
3 diff
(99.5 %id)
NM_194325.2   .c 1 to 2584 1 to 2584 exact RefSeq, AAA   2584/2584
(100 %)
0 diff
(100 %id)
DC375333 brain .c 66 to 639 1 to 574   tiling clone,   574/574
(100 %)
0 diff
(100 %id)
AK295515 hippocampus .c 142 to 2421 1 to 2280 V14M S24F Q123R R379K Y400C tiling clone,   2280/2280
(100 %)
11 diff
(99.6 %id)
DC330848 hippocampus .c 142 to 707 1 to 567       567/567
(100 %)
6 diff
(99.0 %id)
NR_024018.1   .d 1 to 2664 1 to 2664 exact RefSeq, tiling clone, AAA   2664/2664
(100 %)
0 diff
(100 %id)
DC337311 substantia nigra .d 6 to 578 1 to 573       573/573
(100 %)
1 diff
(99.9 %id)
C18375 placenta .d 29 to 290 1 to 263       263/265
(99 %)
3 diff
(98.9 %id)
BM152338 leukopheresis .d 56 to 387 1 to 332       332/384
(86 %)
26 diff
(93.3 %id)
BM152533 leukopheresis .d 56 to 342 1 to 288       288/288
(100 %)
17 diff
(94.1 %id)
BM152594 leukopheresis .d 56 to 487 1 to 432       432/432
(100 %)
1 diff
(99.8 %id)
BX640666 uterus endothel, primary cell culture .d 78 to 2657 1 to 2580 Q42R K112R G157W A223V R298K ... available from DKFZ, AAA   2580/2580
(100 %)
7 diff
(99.8 %id)
AK290435   .d 146 to 2657 1 to 2512 exact     2512/2512
(100 %)
2 diff
(100.0 %id)
DA475980   .d 147 to 704 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
AA437240   .d 538 to 625 88 to 1       88/88
(100 %)
1 diff
(98.9 %id)
DA984594 synovial membrane tissue from rheumatioidarthritis .d 678 to 1244 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA089625 cerebellum .d 916 to 1481 2 to 568   capped   567/567
(100 %)
3 diff
(99.5 %id)
AK000569   .d 928 to 2664 1 to 1737   available from FLJ, AAA   1737/1737
(100 %)
0 diff
(100 %id)
F08405 brain, total brain .d 955 to 1184 1 to 229       229/229
(100 %)
2 diff
(99.2 %id)
H08916 whole brain .d 976 to 1245 1 to 270       270/270
(100 %)
5 diff
(98.2 %id)
DN992525 brain, whole brain .d 1088 to 1791 12 to 715       704/715
(98 %)
6 diff
(99.2 %id)
F05624 brain, total brain .d 1093 to 1363 1 to 271       271/271
(100 %)
0 diff
(100 %id)
AW995438 breast_normal .d 1110 to 1413 13 to 316       304/316
(96 %)
8 diff
(97.5 %id)
BE622345 melanotic melanoma, skin .d 1163 to 1924 1 to 763       763/766
(99 %)
24 diff
(96.9 %id)
CF122416 CNCAP(3)T-225 cell line, Prostate .d 1330 to 1834 19 to 528       510/528
(96 %)
6 diff
(98.9 %id)
TI_154181996   .d 1330 to 2128 88 to 890       803/814
(98 %)
6 diff
(99.3 %id)
BI850499 breast, mammary adenocarcinoma, cell line .d 1443 to 2117 1 to 677       677/677
(100 %)
3 diff
(99.6 %id)
BG032759 breast, mammary adenocarcinoma, cell line .d 1444 to 2179 1 to 727       727/986
(73 %)
17 diff
(98.3 %id)
Z38591 brain, total brain .d 2388 to 2662 275 to 1       275/275
(100 %)
0 diff
(100 %id)
F04622 brain, total brain .d 2501 to 2657 157 to 1       157/164
(95 %)
1 diff
(99.4 %id)
H08830 whole brain .d 2517 to 2658 152 to 11   AAA   142/142
(100 %)
4 diff
(97.2 %id)
DA112966 cerebellum .e-u 1 to 559 2 to 560 exact tiling clone, capped   559/559
(100 %)
0 diff
(100 %id)
BF932589 nervous_tumor .e-u 28 to 389 1 to 362       362/362
(100 %)
9 diff
(97.6 %id)
X52359 lymphoid .e-u 95 to 244 1 to 150       150/150
(100 %)
0 diff
(100 %id)
DB513637 testis .e-u 141 to 843 1 to 703     Submitted on the opposite strand 703/704
(99 %)
6 diff
(99.2 %id)
BG497198 lung, mucoepidermoid carcinoma .e-u 150 to 872 1 to 734   tiling clone,   734/793
(92 %)
60 diff
(92.5 %id)
AI581752 aorta .e-u 269 to 844 576 to 1       576/576
(100 %)
8 diff
(98.7 %id)
BM153546 leukopheresis .e-u 308 to 844 553 to 17   AAA   537/538
(99 %)
1 diff
(99.9 %id)
AI700188 pooled .e-u 341 to 844 533 to 30   AAA   504/504
(100 %)
22 diff
(95.7 %id)
H09790 whole brain .e-u 427 to 832 415 to 1       415/415
(100 %)
12 diff
(97.2 %id)
AA867994 pooled .e-u 446 to 847 402 to 1   tiling clone,   402/402
(100 %)
0 diff
(100 %id)
BM151471 leukopheresis .e-u 559 to 847 302 to 14       289/317
(91 %)
0 diff
(100 %id)
BU565872 mixed (pool of 40 RNAs) .e-u 692 to 845 1 to 154   AAA   154/154
(100 %)
3 diff
(98.1 %id)
DA775830 brain .f 1 to 557 9 to 566 exact tiling clone, capped   558/558
(100 %)
4 diff
(99.3 %id)
DN999132 bone marrow .f 328 to 961 7 to 640   tiling clone,   634/640
(99 %)
13 diff
(98.0 %id)
BF748555 breast_normal .g 1 to 317 48 to 363 L30W tiling clone,   316/363
(87 %)
9 diff
(97.6 %id)
AI318624 early stage papillary serous carcinoma, ovary .h-u 1 to 283 307 to 21 exact tiling clone,   287/332
(86 %)
0 diff
(100 %id)
DA504398 brain Gene ZNF30, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f, .g, .h-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C