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Gene SCAPERTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
249 supporting clones for gene SCAPER back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AU310363 neuroblastoma SCAPER.a 1 to 577 2 to 578   tiling clone,   578/578
(100 %)
4 diff
(99.4 %id)
CR590728 Neuroblastoma Cot 50-normalized SCAPER.a 127 to 1912 1 to 1786   tiling clone,   1786/1786
(100 %)
0 diff
(100 %id)
BX376676 Neuroblastoma Cot 50-normalized SCAPER.a 127 to 958 1 to 832       832/832
(100 %)
0 diff
(100 %id)
NM_020843.2   SCAPER.a 128 to 4834 1 to 4707 exact RefSeq, AAA   4707/4707
(100 %)
0 diff
(100 %id)
CN429168 embryonic stem cells, cell lines H1, H7, andH9 SCAPER.a 137 to 862 1 to 727       727/729
(99 %)
4 diff
(99.5 %id)
AF242528   SCAPER.a 153 to 4825 1 to 4674 exact tiling clone, AAA   4674/4674
(100 %)
2 diff
(100.0 %id)
AA199877   SCAPER.a 153 to 550 1 to 407     Submitted on the opposite strand 407/407
(100 %)
15 diff
(96.4 %id)
DW465948 Liver SCAPER.a 226 to 564 16 to 354       339/354
(95 %)
6 diff
(98.4 %id)
DA407524 thalamus SCAPER.a 319 to 882 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
BP293228 lung SCAPER.a 409 to 989 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DN997694 breast cancer, Mammary gland (cancer tissue) SCAPER.a 434 to 1060 1 to 627       627/630
(99 %)
7 diff
(98.9 %id)
W27967 eye, retina SCAPER.a 450 to 756 328 to 19       310/403
(76 %)
5 diff
(98.8 %id)
BM693840 eye, lens SCAPER.a 512 to 1136 1 to 625       625/625
(100 %)
0 diff
(100 %id)
DA476730   SCAPER.a 539 to 1107 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
BX391629 Neuroblastoma Cot 50-normalized SCAPER.a 578 to 1383 805 to 1       805/965
(83 %)
32 diff
(96.7 %id)
DB205841 trachea SCAPER.a 605 to 1170 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
BG108584 Bone, osteosarcoma, cell line SCAPER.a 786 to 1564 1 to 779       779/847
(91 %)
27 diff
(96.9 %id)
W27352 eye, retina SCAPER.a 837 to 1211 431 to 56       376/446
(84 %)
3 diff
(99.4 %id)
AF119814 heart SCAPER.a 921 to 4834 1 to 3914   tiling clone, AAA   3914/3914
(100 %)
4 diff
(99.9 %id)
AW860072 colon SCAPER.a 980 to 1571 610 to 17       594/610
(97 %)
7 diff
(98.9 %id)
AW811899 stomach SCAPER.a 1022 to 1681 664 to 7       658/666
(98 %)
13 diff
(98.1 %id)
BP318261 pericardium SCAPER.a 1029 to 1611 1 to 582       582/583
(99 %)
7 diff
(98.8 %id)
BX376675 Neuroblastoma Cot 50-normalized SCAPER.a 1045 to 1912 856 to 1       856/865
(98 %)
36 diff
(95.9 %id)
T95264 liver and spleen SCAPER.a 1070 to 1429 1 to 368       368/404
(91 %)
16 diff
(96.1 %id)
AW811875 stomach SCAPER.a 1082 to 1679 608 to 12       597/608
(98 %)
8 diff
(98.7 %id)
AW961891   SCAPER.a 1097 to 1658 11 to 572       562/572
(98 %)
12 diff
(98.0 %id)
T08706   SCAPER.a 1098 to 1495 1 to 401       401/401
(100 %)
5 diff
(98.8 %id)
BI480867 Native Retinal Pigment Epithelium sheets, retina SCAPER.a 1115 to 1637 11 to 536       526/543
(96 %)
10 diff
(98.2 %id)
BP368337 thymus SCAPER.a 1228 to 1809 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BG620049 placenta SCAPER.a 1474 to 2181 1 to 706       706/706
(100 %)
4 diff
(99.5 %id)
AL713227 human skeletal muscle SCAPER.a 1588 to 2019 1 to 432       432/432
(100 %)
0 diff
(100 %id)
BQ640386 eye, retina SCAPER.a 1601 to 2204 8 to 613       609/613
(99 %)
11 diff
(98.3 %id)
DA807471 brain SCAPER.a 1611 to 2162 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
FN119434 breast carcinoma SCAPER.a 1648 to 1745 1 to 102       102/112
(91 %)
6 diff
(94.7 %id)
FN145835 breast carcinoma SCAPER.a 1676 to 1769 1 to 94       94/94
(100 %)
6 diff
(93.7 %id)
DA295813 hippocampus SCAPER.a 1678 to 2249 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
BE783355 eye, retinoblastoma SCAPER.a 1858 to 2573 1 to 717       717/765
(93 %)
35 diff
(95.5 %id)
DA507196 brain SCAPER.a 1909 to 2466 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
W25844 eye, retina SCAPER.a 1945 to 2251 329 to 23       307/336
(91 %)
4 diff
(98.9 %id)
BU618226 Cell Line, Chondrosarcoma SCAPER.a 1978 to 2654 26 to 700     Submitted on the opposite strand 675/682
(98 %)
11 diff
(98.4 %id)
BU618699 Cell Line, Chondrosarcoma SCAPER.a 1978 to 2695 26 to 740     Submitted on the opposite strand 715/723
(98 %)
10 diff
(98.7 %id)
AI357867 Kidney, renal cell tumor SCAPER.a 2031 to 2473 443 to 1       443/443
(100 %)
0 diff
(100 %id)
BU631166 cell lines, Chondrosarcoma SCAPER.a 2112 to 2782 688 to 18   AAA   671/671
(100 %)
1 diff
(99.9 %id)
DA158252 amygdala SCAPER.a 2120 to 2683 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
AI821057   SCAPER.a 2132 to 2555 32 to 455       424/455
(93 %)
6 diff
(98.7 %id)
BM713592 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid SCAPER.a 2140 to 2382 1 to 243   fully sequenced,   243/243
(100 %)
0 diff
(100 %id)
AA641081   SCAPER.a 2148 to 2577 1 to 429       429/429
(100 %)
2 diff
(99.6 %id)
DB450681 testis SCAPER.a 2153 to 2640 1 to 485       485/485
(100 %)
21 diff
(95.7 %id)
BM670902 eye, lens SCAPER.a 2177 to 2782 624 to 19   AAA   606/606
(100 %)
0 diff
(100 %id)
BG576643 breast, mammary adenocarcinoma, cell line SCAPER.a 2203 to 2898 1 to 700       698/722
(96 %)
10 diff
(98.7 %id)
AU310364 neuroblastoma SCAPER.a 2233 to 2782 550 to 1       550/550
(100 %)
0 diff
(100 %id)
BX951655   SCAPER.a 2253 to 2908 1 to 656       656/656
(100 %)
0 diff
(100 %id)
BI093492 cervix SCAPER.a 2304 to 3029 1 to 728       728/738
(98 %)
10 diff
(98.7 %id)
DW433190 Liver SCAPER.a 2313 to 2558 17 to 263       247/263
(93 %)
12 diff
(95.5 %id)
BU739614 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid SCAPER.a 2321 to 2782 480 to 19   fully sequenced, AAA   462/462
(100 %)
0 diff
(100 %id)
AA160055   SCAPER.a 2333 to 2771 1 to 440   fully sequenced,   440/440
(100 %)
8 diff
(98.2 %id)
DA291920 hippocampus SCAPER.a 2335 to 2887 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
BQ027071 Chondrosarcoma, Left Pubic Bone SCAPER.a 2351 to 2802 42 to 495     Submitted on the opposite strand 453/483
(93 %)
14 diff
(97.2 %id)
DA782011 brain SCAPER.a 2443 to 2991 2 to 553   capped   552/552
(100 %)
3 diff
(99.5 %id)
DA305767 hippocampus SCAPER.a 2447 to 3017 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA305807 hippocampus SCAPER.a 2447 to 3011 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA208708 brain SCAPER.a 2448 to 3001 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
AA603890   SCAPER.a 2506 to 2802 297 to 1       297/297
(100 %)
4 diff
(98.7 %id)
DA340966 substantia nigra SCAPER.a 2521 to 3064 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
AA160056   SCAPER.a 2556 to 2782 227 to 1   fully sequenced,   227/227
(100 %)
0 diff
(100 %id)
CA335913 anterior rhombomeres 1-4 (4 pooled) SCAPER.a 2644 to 2814 1 to 171   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 171/194
(88 %)
10 diff
(94.9 %id)
DA159580 amygdala SCAPER.a 2695 to 3126 131 to 561   capped   431/560
(76 %)
6 diff
(99.0 %id)
W27324 eye, retina SCAPER.a 2698 to 3127 437 to 7       431/466
(92 %)
3 diff
(99.4 %id)
DA716442   SCAPER.a 2721 to 3291 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
R35260 whole brain SCAPER.a 2805 to 3265 1 to 475       475/512
(92 %)
16 diff
(96.9 %id)
DB175267 kidney, tumor tissue SCAPER.a 2848 to 3403 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
AW952908   SCAPER.a 2912 to 3412 1 to 501       501/501
(100 %)
2 diff
(99.7 %id)
BP210343 cerebellum SCAPER.a 2969 to 3500 1 to 534       534/583
(91 %)
4 diff
(99.4 %id)
AA383215 testis SCAPER.a 3048 to 3385 1 to 338       338/338
(100 %)
0 diff
(100 %id)
AW956746   SCAPER.a 3049 to 3651 1 to 603       603/638
(94 %)
9 diff
(98.6 %id)
R50019 breast SCAPER.a 3073 to 3458 1 to 397       397/399
(99 %)
16 diff
(96.0 %id)
BM803708 leiomyosarcoma, uterus SCAPER.a 3187 to 4040 1 to 855       855/1026
(83 %)
6 diff
(99.5 %id)
H12967 whole brain SCAPER.a 3255 to 3644 1 to 399       399/478
(83 %)
12 diff
(97.5 %id)
BC015212 Colon, adenocarcinoma SCAPER.a 3256 to 4408 1 to 1153   available from MGC, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 1153/1153
(100 %)
0 diff
(100 %id)
BE870947 adenocarcinoma, colon SCAPER.a 3277 to 4000 1 to 729   available from MGC,   729/729
(100 %)
13 diff
(98.3 %id)
CB958753 Pooled-Glandular SCAPER.a 3338 to 4043 1 to 721       721/757
(95 %)
35 diff
(95.4 %id)
BX280419 colon, moderately differentiated adenocarcinoma SCAPER.a 3378 to 3853 1 to 476       476/476
(100 %)
0 diff
(100 %id)
EC482525 Prostate SCAPER.a 3431 to 3537 1 to 107       107/107
(100 %)
4 diff
(96.3 %id)
BP276777 Kidney SCAPER.a 3437 to 4019 1 to 581       581/581
(100 %)
3 diff
(99.5 %id)
BG498135 adenocarcinoma, Prostate SCAPER.a 3468 to 4293 2 to 821       820/838
(97 %)
23 diff
(97.3 %id)
BU853682 testis SCAPER.a 3476 to 4209 3 to 741       739/741
(99 %)
14 diff
(98.2 %id)
BT006762   SCAPER.a 3511 to 4388 1 to 878       878/879
(99 %)
2 diff
(99.8 %id)
CV029709 mixed SCAPER.a 3511 to 4068 1 to 558       558/558
(100 %)
2 diff
(99.7 %id)
BU634260 cell lines, Chondrosarcoma SCAPER.a 3550 to 4389 831 to 1       829/834
(99 %)
17 diff
(98.0 %id)
AL137612 testis SCAPER.a 3588 to 4831 1 to 1244   available from DKFZ, AAA   1244/1244
(100 %)
0 diff
(100 %id)
BU618222 Cell Line, Chondrosarcoma SCAPER.a 3658 to 4389 730 to 1       730/745
(97 %)
8 diff
(99.0 %id)
BU568158 testis SCAPER.a 3692 to 4409 1 to 719       719/725
(99 %)
5 diff
(99.4 %id)
AW580814 leiomios SCAPER.a 3800 to 4407 1 to 609       609/613
(99 %)
16 diff
(97.4 %id)
BE169665 head_neck SCAPER.a 3802 to 4146 346 to 1     Submitted on the opposite strand 346/346
(100 %)
7 diff
(98.0 %id)
BM312540 Pancreas, Purified pancreatic islet SCAPER.a 3876 to 4340 1 to 465       465/465
(100 %)
2 diff
(99.6 %id)
CK822098 Pancreas, Purified pancreatic islet SCAPER.a 3911 to 4388 1 to 478     Submitted on the opposite strand 478/478
(100 %)
5 diff
(99.0 %id)
AI052642 liver and spleen SCAPER.a 3918 to 4367 454 to 5       450/454
(99 %)
7 diff
(98.5 %id)
CR625323 Neuroblastoma Cot 25-normalized SCAPER.a 3924 to 4826 1 to 903       903/903
(100 %)
0 diff
(100 %id)
BX332583 Neuroblastoma Cot 25-normalized SCAPER.a 3937 to 4826 12 to 912   fully sequenced,   897/908
(98 %)
25 diff
(97.3 %id)
AI201133   SCAPER.a 3955 to 4409 456 to 2       455/456
(99 %)
0 diff
(100 %id)
DB519681.
matches multiple genes
testis SCAPER.a 3956 to 4407 1 to 452     Submitted on the opposite strand, also hits gene WRBandSH3BGR 452/452
(100 %)
3 diff
(99.4 %id)
AA972398 pooled SCAPER.a 3976 to 4409 436 to 3       434/436
(99 %)
0 diff
(100 %id)
H00737 placenta SCAPER.a 4019 to 4385 1 to 377       377/449
(83 %)
15 diff
(96.7 %id)
AW136178   SCAPER.a 4039 to 4408 388 to 19   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 370/396
(93 %)
2 diff
(99.5 %id)
AI656716 pooled germ cell tumors SCAPER.a 4043 to 4409 374 to 8       367/374
(98 %)
0 diff
(100 %id)
AI970224 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) SCAPER.a 4043 to 4305 264 to 1       264/264
(100 %)
4 diff
(98.5 %id)
AW594287 pooled germ cell tumors SCAPER.a 4043 to 4409 374 to 8       367/374
(98 %)
0 diff
(100 %id)
BG251026 adenocarcinoma, cell line, Liver SCAPER.a 4096 to 4734 1 to 639       639/871
(73 %)
1 diff
(99.9 %id)
CB158356 Liver SCAPER.a 4102 to 4668 1 to 567       567/567
(100 %)
1 diff
(99.9 %id)
FN065381 breast carcinoma SCAPER.a 4149 to 4226 1 to 79       79/86
(91 %)
2 diff
(97.7 %id)
BX329589 Neuroblastoma Cot 25-normalized SCAPER.a 4185 to 4792 634 to 20   fully sequenced,   615/634
(97 %)
0 diff
(100 %id)
BG209720   SCAPER.a 4229 to 4703 1 to 476       476/761
(62 %)
14 diff
(98.2 %id)
CK822099 Pancreas, Purified pancreatic islet SCAPER.a 4237 to 4826 598 to 9     Submitted on the opposite strand 590/598
(98 %)
0 diff
(100 %id)
AI675243 Prostate SCAPER.a 4266 to 4730 465 to 1       465/465
(100 %)
1 diff
(99.8 %id)
BG181679   SCAPER.a 4280 to 4826 1 to 544   AAA   544/545
(99 %)
20 diff
(96.4 %id)
BG182709   SCAPER.a 4280 to 4731 1 to 449   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 449/449
(100 %)
6 diff
(98.7 %id)
BG211779   SCAPER.a 4280 to 4825 1 to 543   AAA   543/544
(99 %)
9 diff
(98.4 %id)
BG221118   SCAPER.a 4282 to 4727 42 to 490   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 449/490
(91 %)
6 diff
(98.8 %id)
AW167061 serous papillary carcinoma, high grade, 2pooled tumors, uterus SCAPER.a 4295 to 4826 535 to 4       532/535
(99 %)
0 diff
(100 %id)
DB516142 testis SCAPER.a 4299 to 4730 1 to 432     Submitted on the opposite strand 432/432
(100 %)
1 diff
(99.8 %id)
BG213917   SCAPER.a 4308 to 4825 29 to 545   AAA   517/545
(94 %)
7 diff
(98.8 %id)
AI619848 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus SCAPER.a 4339 to 4727 411 to 23   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 389/389
(100 %)
4 diff
(99.0 %id)
AA528738 alveolar rhabdomyosarcoma SCAPER.a 4354 to 4731 420 to 42   AAA   379/407
(93 %)
0 diff
(100 %id)
AW188528 colon, moderately differentiated adenocarcinoma SCAPER.a 4369 to 4826 460 to 3       458/460
(99 %)
0 diff
(100 %id)
BM353118 Pancreas, Purified pancreatic islet SCAPER.a 4370 to 4824 455 to 1       455/455
(100 %)
1 diff
(99.8 %id)
AI431403 adenocarcinoma, Pancreas SCAPER.a 4397 to 4826 430 to 1       430/430
(100 %)
0 diff
(100 %id)
BP387660 pancreatic islet SCAPER.a 4403 to 4795 1 to 393     Submitted on the opposite strand 393/393
(100 %)
3 diff
(99.3 %id)
AA383214 testis SCAPER.a 4481 to 4825 345 to 1       345/345
(100 %)
0 diff
(100 %id)
H05606 whole brain SCAPER.a 4497 to 4818 344 to 18   AAA   327/337
(97 %)
5 diff
(98.6 %id)
BF588513 colon, colon tumor, RER+ SCAPER.a 4511 to 4819 310 to 2       309/310
(99 %)
0 diff
(100 %id)
AI699565 pooled germ cell tumors SCAPER.a 4559 to 4825 267 to 1       267/267
(100 %)
1 diff
(99.7 %id)
R50931 whole brain SCAPER.a 4629 to 4825 223 to 27   AAA   197/197
(100 %)
1 diff
(99.5 %id)
AA342748 Spleen SCAPER.a 4655 to 4825 172 to 1       172/172
(100 %)
1 diff
(99.5 %id)
AK056515   SCAPER.b 1 to 2938 2 to 2939   tiling clone, available from FLJ,   2939/2939
(100 %)
2 diff
(100.0 %id)
DA743309   SCAPER.b 1 to 537 2 to 539   capped   538/539
(99 %)
3 diff
(99.5 %id)
AK025663   SCAPER.b 2406 to 4736 1 to 2331   tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 2331/2331
(100 %)
3 diff
(99.9 %id)
DB324837   SCAPER.b 2729 to 2938 210 to 1       210/210
(100 %)
0 diff
(100 %id)
BX647285 human retina SCAPER.c 1 to 4841 1 to 4841 exact tiling clone, available from DKFZ, AAA   4841/4841
(100 %)
4 diff
(100.0 %id)
NM_001145923.1   SCAPER.c 1 to 4850 1 to 4850 exact RefSeq, AAA   4850/4850
(100 %)
0 diff
(100 %id)
DA485894 brain SCAPER.d 1 to 576 2 to 578   tiling clone, capped   577/582
(99 %)
9 diff
(98.5 %id)
AB040887   SCAPER.d 23 to 5460 1 to 5438 P961T tiling clone, available from KIAA,   5438/5438
(100 %)
6 diff
(99.9 %id)
DB201846 trachea SCAPER.d 76 to 652 2 to 579   capped   578/578
(100 %)
5 diff
(99.2 %id)
DA752423   SCAPER.d 78 to 634 2 to 558   tiling clone, capped   557/557
(100 %)
1 diff
(99.9 %id)
DA572016 whole embryo, mainly body SCAPER.d 811 to 1579 2 to 769   capped   768/768
(100 %)
6 diff
(99.3 %id)
BP250840 hippocampus SCAPER.d 1103 to 1681 1 to 582       582/582
(100 %)
8 diff
(98.7 %id)
BX491341   SCAPER.d 1281 to 1797 1 to 518       518/518
(100 %)
4 diff
(99.3 %id)
DB358968 whole embryo, mainly body SCAPER.d 2128 to 2682 544 to 1       539/552
(97 %)
24 diff
(95.7 %id)
AW139369   SCAPER.d 4956 to 5486 548 to 18   tiling clone, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 531/531
(100 %)
2 diff
(99.7 %id)
AI659321 Prostate SCAPER.d 5217 to 5462 246 to 1       246/246
(100 %)
0 diff
(100 %id)
DA204452 brain SCAPER.e -10 to 564 2 to 576   capped   575/575
(100 %)
4 diff
(99.4 %id)
DB030432 testis SCAPER.e -10 to 542 2 to 555   capped   554/554
(100 %)
4 diff
(99.3 %id)
DA519707 brain SCAPER.e 1 to 546 7 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA779651 brain SCAPER.e 1 to 574 7 to 581   capped   580/580
(100 %)
5 diff
(99.2 %id)
DA451851 tongue, tumor tissue SCAPER.e 1 to 576 6 to 581   capped   580/580
(100 %)
3 diff
(99.5 %id)
DA788310 brain SCAPER.e 1 to 581 6 to 589   capped   588/588
(100 %)
7 diff
(98.9 %id)
AK056095   SCAPER.e 1 to 2506 2 to 2507 Q455R R712G tiling clone, available from FLJ,   2507/2507
(100 %)
2 diff
(100.0 %id)
DA698721   SCAPER.e 1 to 518 2 to 519   capped   518/518
(100 %)
1 diff
(99.9 %id)
DA193561 amygdala SCAPER.e 47 to 617 2 to 575   capped   571/574
(99 %)
2 diff
(99.7 %id)
DA792898 brain SCAPER.e 78 to 636 2 to 560   capped   559/559
(100 %)
3 diff
(99.5 %id)
DA493729 brain SCAPER.e 93 to 655 2 to 564   capped   563/563
(100 %)
3 diff
(99.5 %id)
DA778120 brain SCAPER.e 94 to 669 2 to 578   capped   575/577
(99 %)
5 diff
(99.2 %id)
BP379310 uterus SCAPER.e 94 to 646 1 to 553       553/553
(100 %)
2 diff
(99.7 %id)
DA511476 brain SCAPER.e 110 to 686 2 to 578   capped   577/577
(100 %)
2 diff
(99.7 %id)
DA440571 tongue, tumor tissue SCAPER.e 115 to 713 2 to 600   capped   599/599
(100 %)
0 diff
(100 %id)
BP351689   SCAPER.e 119 to 696 1 to 578       578/578
(100 %)
0 diff
(100 %id)
BF102512 adenocarcinoma, Prostate SCAPER.e 128 to 690 1 to 563       563/876
(64 %)
3 diff
(99.7 %id)
CB984697 Pooled-Glandular SCAPER.e 129 to 816 4 to 700   available from MGC,   697/759
(91 %)
29 diff
(96.2 %id)
BP228695 brain SCAPER.e 146 to 567 161 to 583       582/583
(99 %)
13 diff
(97.8 %id)
DA558882   SCAPER.e 146 to 544 162 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DB337894 testis SCAPER.e 1807 to 2341 535 to 1   tiling clone,   535/535
(100 %)
0 diff
(100 %id)
DB323557   SCAPER.e 1990 to 2506 518 to 1       518/523
(99 %)
3 diff
(99.5 %id)
DA508676 brain SCAPER.f 1 to 554 2 to 556   tiling clone, capped   555/555
(100 %)
4 diff
(99.3 %id)
DW425463 Liver SCAPER.f 72 to 339 18 to 285       268/285
(94 %)
7 diff
(97.6 %id)
CD687999 normal nasopharynx SCAPER.f 80 to 365 28 to 316       289/316
(91 %)
13 diff
(95.9 %id)
AL598279   SCAPER.f 84 to 481 1 to 398       398/398
(100 %)
2 diff
(99.5 %id)
BC107415 Prostate, adenocarcinoma. SCAPER.f 87 to 1799 1 to 1713   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1713/1755
(97 %)
7 diff
(99.7 %id)
CD630436   SCAPER.f 92 to 469 1 to 378       378/378
(100 %)
1 diff
(99.8 %id)
CD630437   SCAPER.f 92 to 468 378 to 1       378/378
(100 %)
2 diff
(99.5 %id)
CD630440   SCAPER.f 92 to 469 1 to 378       378/378
(100 %)
0 diff
(100 %id)
CD630441   SCAPER.f 92 to 468 373 to 1       373/373
(100 %)
4 diff
(99.0 %id)
CD630442   SCAPER.f 92 to 469 1 to 383       383/383
(100 %)
6 diff
(98.5 %id)
CD630443   SCAPER.f 92 to 468 375 to 1       375/375
(100 %)
4 diff
(99.0 %id)
CD630432   SCAPER.f 104 to 469 1 to 365       365/365
(100 %)
4 diff
(99.0 %id)
CD630434   SCAPER.f 104 to 469 1 to 366       366/366
(100 %)
2 diff
(99.5 %id)
CD630438   SCAPER.f 104 to 469 1 to 366       366/366
(100 %)
3 diff
(99.2 %id)
CD630444   SCAPER.f 104 to 469 1 to 366       366/366
(100 %)
3 diff
(99.2 %id)
BC070197 Glandular pool- thyroid, parathyroid,adrenal cortex, pineal gland, submandibular gland. SCAPER.f 111 to 1799 1 to 1689   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1689/1734
(97 %)
0 diff
(100 %id)
CD630433   SCAPER.f 127 to 468 340 to 1       340/363
(93 %)
5 diff
(98.7 %id)
CD630435   SCAPER.f 127 to 468 341 to 1       341/364
(93 %)
3 diff
(99.2 %id)
CD630445   SCAPER.f 127 to 468 340 to 1       340/363
(93 %)
5 diff
(98.7 %id)
AA199936   SCAPER.f 1712 to 2012 305 to 1   tiling clone, Submitted on the opposite strand 305/390
(78 %)
5 diff
(98.8 %id)
DA508868 brain SCAPER.g 1 to 559 2 to 560   tiling clone, capped   559/559
(100 %)
2 diff
(99.7 %id)
DB097389 testis SCAPER.g 48 to 640 2 to 594   tiling clone, capped   593/593
(100 %)
2 diff
(99.7 %id)
DA569742 whole embryo, mainly head SCAPER.g 592 to 1438 2 to 848   tiling clone, capped   847/857
(98 %)
2 diff
(99.8 %id)
DB356434 whole embryo, mainly head SCAPER.g 1576 to 2124 551 to 1   tiling clone,   551/552
(99 %)
11 diff
(98.1 %id)
BG718576 testis SCAPER.h -8 to 663 1 to 673   tiling clone,   673/678
(99 %)
8 diff
(98.9 %id)
BP213309 cerebrum SCAPER.h 535 to 1108 1 to 574   tiling clone,   574/574
(100 %)
0 diff
(100 %id)
DA521106 brain SCAPER.i 1 to 570 2 to 571 exact tiling clone, capped   570/570
(100 %)
0 diff
(100 %id)
BF511187   SCAPER.j 1 to 532 552 to 15 L30V tiling clone, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 535/553
(96 %)
2 diff
(99.7 %id)
BE856779 pooled SCAPER.j 46 to 537 492 to 1   tiling clone,   492/492
(100 %)
0 diff
(100 %id)
AW474474 serous papillary carcinoma, high grade, 2pooled tumors, uterus SCAPER.j 190 to 532 343 to 1       343/343
(100 %)
0 diff
(100 %id)
AA677027 liver and spleen SCAPER.k 1 to 395 396 to 1   tiling clone,   396/396
(100 %)
6 diff
(98.5 %id)
DA235063 brain SCAPER.k 81 to 671 2 to 591   tiling clone, capped   590/590
(100 %)
2 diff
(99.7 %id)
AA284439 germinal center B cell SCAPER.k 311 to 503 1 to 192   tiling clone,   192/192
(100 %)
3 diff
(98.5 %id)
BM544292 ovary (pool of 3) SCAPER.k 479 to 1396 19 to 951   tiling clone,   933/1099
(84 %)
26 diff
(97.7 %id)
EB387475 eye, optic nerve SCAPER.k 1057 to 1902 1 to 846   tiling clone,   846/846
(100 %)
6 diff
(99.3 %id)
AK128091 testis SCAPER.k 1355 to 5149 1 to 3796 Y72D tiling clone, available from FLJ,   3796/3796
(100 %)
3 diff
(100.0 %id)
DB069890 testis SCAPER.k 1356 to 1913 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
AW950761   SCAPER.k 1443 to 2058 1 to 620   tiling clone,   620/626
(99 %)
27 diff
(95.7 %id)
AA347106 heart SCAPER.k 1461 to 1758 1 to 298       298/298
(100 %)
0 diff
(100 %id)
BE644627 pooled SCAPER.k 2635 to 3050 418 to 1       418/418
(100 %)
1 diff
(99.8 %id)
BF358992 lung_tumor SCAPER.k 3278 to 3482 1 to 207       207/207
(100 %)
9 diff
(95.7 %id)
DB305660 brain SCAPER.k 4607 to 5149 543 to 1       543/544
(99 %)
0 diff
(100 %id)
AA292728 germinal center B cell SCAPER.k 4765 to 5054 290 to 1       290/290
(100 %)
0 diff
(100 %id)
DB033412 testis SCAPER.l 1 to 553 2 to 554 exact tiling clone, capped   553/553
(100 %)
2 diff
(99.7 %id)
BP369025 testis SCAPER.m 1 to 565 1 to 565   tiling clone,   565/566
(99 %)
1 diff
(99.9 %id)
DB069685 testis SCAPER.m 39 to 568 2 to 532 exact tiling clone, capped   531/531
(100 %)
3 diff
(99.5 %id)
CB158925 Liver SCAPER.n 1 to 552 1 to 552 N50H tiling clone,   552/552
(100 %)
1 diff
(99.9 %id)
CB161358 Liver SCAPER.o 1 to 619 6 to 624 exact tiling clone,   624/624
(100 %)
1 diff
(99.9 %id)
DA511640 brain SCAPER.p 1 to 552 2 to 552 S102A R103D P104Q T105H S106H ... tiling clone, capped   551/551
(100 %)
5 diff
(99.1 %id)
DA997719   SCAPER.p 30 to 504 2 to 480   tiling clone, capped   479/482
(99 %)
7 diff
(98.6 %id)
DA837888 placenta SCAPER.q 1 to 543 2 to 544 exact tiling clone, capped   543/543
(100 %)
4 diff
(99.3 %id)
DA950259 Spleen SCAPER.r 1 to 578 2 to 579   tiling clone, capped   578/578
(100 %)
0 diff
(100 %id)
BG181394   SCAPER.r 514 to 763 1 to 249   tiling clone,   249/252
(98 %)
10 diff
(96.1 %id)
BF873238 lung_tumor SCAPER.r 682 to 945 271 to 9   tiling clone, Submitted on the opposite strand 263/271
(97 %)
0 diff
(100 %id)
DA350822 substantia nigra SCAPER.s 1 to 567 2 to 569   tiling clone, capped   568/568
(100 %)
1 diff
(99.9 %id)
BQ639700 eye, retina SCAPER.s 489 to 1113 1 to 625   tiling clone,   625/625
(100 %)
0 diff
(100 %id)
DN990946 brain, whole brain SCAPER.t 69 to 779 83 to 793 exact tiling clone,   793/793
(100 %)
5 diff
(99.4 %id)
AI793036 Kidney SCAPER.u-u 1 to 512 1 to 512 exact tiling clone,   512/512
(100 %)
0 diff
(100 %id)
BX100838 Kidney SCAPER.u-u 2 to 726 1 to 725 exact tiling clone,   725/725
(100 %)
0 diff
(100 %id)
BX484434   SCAPER.va-u 1 to 696 1 to 695 exact tiling clone,   695/697
(99 %)
2 diff
(99.8 %id)
BP257877 heart SCAPER.vb 1 to 562 1 to 562   tiling clone,   562/562
(100 %)
0 diff
(100 %id)
DA560603 heart SCAPER.vb 45 to 633 2 to 590   tiling clone, capped   589/589
(100 %)
0 diff
(100 %id)
BP259726 heart SCAPER.vb 57 to 628 1 to 571       571/571
(100 %)
1 diff
(99.9 %id)
BX491456   SCAPER.vc-u 1 to 571 1 to 572 E26G A27G S28L A30S M31H ... tiling clone,   572/572
(100 %)
5 diff
(99.2 %id)
DB026413 testis SCAPER.vd 1 to 556 2 to 557 exact tiling clone, capped   556/556
(100 %)
1 diff
(99.9 %id)
DA413103 thalamus SCAPER.ve 1 to 543 2 to 544 exact tiling clone, capped   543/543
(100 %)
0 diff
(100 %id)
AW901827 nervous_normal SCAPER.vf-u 1 to 243 1 to 244 exact tiling clone,   244/247
(98 %)
8 diff
(96.8 %id)
BE701935 nervous_normal SCAPER.vf-u 1 to 243 8 to 252 K2M Q15R     245/255
(96 %)
12 diff
(95.3 %id)
BE701966 nervous_normal SCAPER.vf-u 1 to 243 246 to 5 Q12P     242/246
(98 %)
0 diff
(100 %id)
BE701981 nervous_normal SCAPER.vf-u 1 to 239 249 to 12 R9L I10N E11*     238/249
(95 %)
0 diff
(100 %id)
BE936161 nervous_normal SCAPER.vf-u 1 to 243 248 to 4 A41C L42T S43E E44*     245/248
(98 %)
0 diff
(100 %id)
BE936185 nervous_normal SCAPER.vf-u 1 to 243 247 to 4 S46Y S47K     244/247
(98 %)
0 diff
(100 %id)
BE936197 nervous_normal SCAPER.vf-u 1 to 243 245 to 4 exact tiling clone,   242/245
(98 %)
0 diff
(100 %id)
BE936205 nervous_normal SCAPER.vf-u 5 to 243 3 to 242 exact     240/244
(98 %)
6 diff
(97.6 %id)
BE936180 nervous_normal SCAPER.vf-u 9 to 243 8 to 243 exact     236/246
(95 %)
7 diff
(97.2 %id)
BE936186 nervous_normal SCAPER.vf-u 9 to 243 8 to 243 exact     236/246
(95 %)
7 diff
(97.2 %id)
AV706820 adrenal gland Gene SCAPER, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AK125919 testis Gene SCAPER, variant not shown       available from FLJ, This clone was ignored    
BF176070 blood Gene SCAPER, variant not shown         This clone was ignored    
DB298427 cerebellum Gene SCAPER, variant not shown         This clone was ignored    
DA092780 cerebellum Gene SCAPER, variant not shown       capped This clone was ignored    
DA220365 brain Gene SCAPER, variant not shown       capped      
DA244328 brain Gene SCAPER, variant not shown       capped      
CD630439   Gene SCAPER, variant not shown         This clone was ignored    
AI306396 carcinoid, lung Gene SCAPER, variant not shown              
AI261347 Kidney Gene SCAPER, variant not shown         This clone was ignored    
AI793213 Kidney Gene SCAPER, variant not shown         This clone was ignored    
BG054559 Kidney Gene SCAPER, variant not shown         This clone was ignored    
DB369815   Gene SCAPER, variant not shown              
DA737231   Gene SCAPER, variant not shown       capped      
DA782321 brain Gene SCAPER, variant not shown       capped      
DB376556 placenta Gene SCAPER, variant not shown         This clone was ignored    
DA831078 placenta Gene SCAPER, variant not shown       capped This clone was ignored    
DB070984 testis Gene SCAPER, variant not shown       capped This clone was ignored    
DB340172 testis Gene SCAPER, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u-u, .va-u, .vb, .vc-u, .vd, .ve, .vf-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI