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Gene ZNF236TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
124 supporting clones for gene ZNF236 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BX648028 human testis .a 1 to 7121 1 to 7121 H177R N283D I615V N738S R1263C tiling clone, available from DKFZ, AAA   7121/7121
(100 %)
12 diff
(99.9 %id)
AL710279 human skeletal muscle .a 56 to 520 13 to 477       465/477
(97 %)
6 diff
(98.8 %id)
BP354765   .a 78 to 660 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DB087966 testis .a 93 to 640 2 to 551   capped   550/550
(100 %)
2 diff
(99.7 %id)
TI_1968234729   .a 133 to 1248 1108 to 1       1108/1266
(87 %)
17 diff
(98.7 %id)
TI_1968234895   .a 149 to 1255 1103 to 10   tiling clone,   1094/1279
(85 %)
14 diff
(99.0 %id)
AA846414   .a 650 to 1375 724 to 1       724/724
(100 %)
11 diff
(98.5 %id)
BP230638 brain .a 667 to 1242 7 to 582       576/582
(98 %)
7 diff
(98.8 %id)
TI_1968234893   .a 681 to 1768 1080 to 2       1079/1268
(85 %)
11 diff
(99.2 %id)
AW979307   .a 858 to 1388 644 to 113   AAA Submitted on the opposite strand 532/646
(82 %)
6 diff
(99.1 %id)
BE466654 pooled germ cell tumors .a 902 to 1379 478 to 1       478/478
(100 %)
0 diff
(100 %id)
BF766615 colon_est .a 934 to 1198 193 to 458       266/458
(58 %)
6 diff
(98.7 %id)
AW241529 pooled germ cell tumors .a 942 to 1379 437 to 1       439/437
(100 %)
2 diff
(99.6 %id)
TI_1968234901   .a 1104 to 2234 1133 to 15       1119/1287
(86 %)
14 diff
(99.0 %id)
AA847694 ovary .a 1106 to 1379 278 to 6   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 273/278
(98 %)
0 diff
(100 %id)
BF930990 nervous_tumor .a 1247 to 1667 434 to 15     Submitted on the opposite strand 420/434
(96 %)
3 diff
(99.4 %id)
CD251873 testis .a 1357 to 2096 23 to 775       753/924
(81 %)
18 diff
(98.1 %id)
TI_1968234829   .a 1418 to 2550 6 to 1131       1126/1288
(87 %)
23 diff
(98.3 %id)
BX476905   .a 1418 to 1993 20 to 595       576/595
(96 %)
7 diff
(98.9 %id)
TI_1968235487   .a 1488 to 2550 14 to 1072       1059/1287
(82 %)
16 diff
(98.8 %id)
TI_1968234699   .a 1558 to 2730 1171 to 14       1160/1281
(90 %)
25 diff
(98.1 %id)
CD642400 Embryonic Stem cells .a 1725 to 2481 12 to 766       755/767
(98 %)
13 diff
(98.4 %id)
BP229826 brain .a 1758 to 2339 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
AF083213   .a 1870 to 2246 1 to 377   AAA   377/377
(100 %)
0 diff
(100 %id)
BP312262 brain .a 1966 to 2544 1 to 580       580/582
(99 %)
3 diff
(99.5 %id)
DB119759 thymus .a 1998 to 2549 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
TI_1968234669   .a 2036 to 3126 1099 to 13       1087/1273
(85 %)
3 diff
(99.8 %id)
TI_1968234859   .a 2128 to 3281 1 to 1150   tiling clone,   1150/1273
(90 %)
18 diff
(98.6 %id)
AW516710 ovary, papillary serous ovarian metastasis .a 2151 to 2533 403 to 21       383/403
(95 %)
1 diff
(99.8 %id)
DA182768 amygdala .a 2524 to 3090 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
TI_1968234887   .a 2637 to 3746 25 to 1120       1096/1259
(87 %)
25 diff
(98.1 %id)
DB231913 trachea .a 2767 to 3355 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
AA665574   .a 2827 to 3063 325 to 90   AAA   238/296
(80 %)
0 diff
(100 %id)
BE042789 colon, moderately-differentiated adenocarcinoma .a 2888 to 3221 515 to 182       334/515
(64 %)
1 diff
(99.9 %id)
TI_1968234875   .a 3102 to 4328 1224 to 17   tiling clone,   1208/1290
(93 %)
25 diff
(98.1 %id)
TI_1968234807   .a 3146 to 4325 19 to 1191       1173/1323
(88 %)
24 diff
(98.2 %id)
CN432232 embryonic stem cells, cell lines H1, H7, andH9 .a 3257 to 3962 1 to 706       706/706
(100 %)
0 diff
(100 %id)
DB218884 trachea .a 3404 to 3938 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
TI_1968234831   .a 3557 to 4416 23 to 881       859/1253
(68 %)
16 diff
(98.8 %id)
DA339294 hippocampus .a 3616 to 4174 2 to 560   capped   559/568
(98 %)
0 diff
(100 %id)
DA230532 brain .a 3826 to 4324 2 to 500   capped   499/499
(100 %)
0 diff
(100 %id)
DA111501 cerebellum .a 3828 to 4384 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
AW499950 lymph .a 3839 to 4426 8 to 595       588/595
(98 %)
9 diff
(98.5 %id)
TI_154154006   .a 3839 to 4469 80 to 710       631/634
(99 %)
5 diff
(99.3 %id)
TI_1968234853   .a 3975 to 5161 20 to 1198       1179/1272
(92 %)
27 diff
(97.9 %id)
DB082244 testis .a 4225 to 4791 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
TI_154149314   .a 4286 to 4914 56 to 687       632/887
(71 %)
10 diff
(98.9 %id)
AL600370   .a 4323 to 4896 21 to 594       574/594
(96 %)
6 diff
(99.0 %id)
BM460178 leiomyosarcoma, uterus .a 4392 to 5364 41 to 1017       977/1087
(89 %)
35 diff
(96.8 %id)
TI_1968234805   .a 4408 to 5659 1277 to 21       1255/1328
(94 %)
45 diff
(96.7 %id)
TI_1968236041   .a 4467 to 5565 1091 to 2   tiling clone,   1090/1285
(84 %)
13 diff
(99.0 %id)
BF688675 eye, normal pigmented retinal epithelium .a 4653 to 5035 1 to 385   fully sequenced,   385/385
(100 %)
6 diff
(98.5 %id)
BF688900 eye, normal pigmented retinal epithelium .a 5004 to 5643 670 to 27   fully sequenced,   644/670
(96 %)
9 diff
(98.7 %id)
TI_1968234655   .a 5052 to 6209 10 to 1153   tiling clone,   1144/1265
(90 %)
24 diff
(98.2 %id)
BF512953   .a 5114 to 5484 21 to 393     Submitted on the opposite strand 373/393
(94 %)
19 diff
(95.2 %id)
BF511907   .a 5249 to 5639 1 to 391     Submitted on the opposite strand 391/391
(100 %)
9 diff
(97.7 %id)
AF085244 Kidney .b 1 to 8121 1 to 8119 I613V M1544T tiling clone, AAA   8119/8119
(100 %)
11 diff
(99.9 %id)
NM_007345.3   .b 1 to 8121 1 to 8121 exact RefSeq, AAA   8121/8121
(100 %)
2 diff
(100.0 %id)
TI_1968231245   .b 165 to 1198 80 to 1109       1033/1261
(81 %)
14 diff
(98.9 %id)
TI_1968236233   .b 165 to 1229 81 to 1140       1062/1238
(85 %)
17 diff
(98.7 %id)
BC140859 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .b 170 to 6430 1 to 6261 I613V tiling clone,   6261/6261
(100 %)
6 diff
(100.0 %id)
AB208834 brain .b 1580 to 7801 8 to 6227       6220/6220
(100 %)
11 diff
(99.9 %id)
AA004967 liver and spleen .b 5753 to 5998 1 to 249       249/262
(95 %)
10 diff
(96.2 %id)
F11565 brain, total brain .b 5767 to 6076 1 to 310       310/310
(100 %)
2 diff
(99.4 %id)
F12806 brain, total brain .b 5767 to 6098 1 to 332       332/332
(100 %)
4 diff
(98.8 %id)
AA007231 whole brain .b 5767 to 6013 1 to 248       248/248
(100 %)
10 diff
(96.0 %id)
R15019 whole brain .b 5768 to 6083 1 to 325       325/325
(100 %)
15 diff
(95.4 %id)
R18716 whole brain .b 5768 to 6167 1 to 404       404/469
(86 %)
11 diff
(97.7 %id)
R25834 whole brain .b 5768 to 6091 1 to 336       336/346
(97 %)
22 diff
(93.7 %id)
T75167 whole brain .b 5793 to 6275 1 to 499       499/501
(99 %)
27 diff
(94.7 %id)
BE884230 leiomyosarcoma, uterus .b 5806 to 6383 1 to 587       587/796
(73 %)
19 diff
(97.7 %id)
BU852283 testis .b 5880 to 6654 1 to 784   tiling clone,   784/793
(98 %)
21 diff
(97.4 %id)
AW385056 head_neck .b 5930 to 6403 487 to 16       472/487
(96 %)
0 diff
(100 %id)
DA383084 thalamus .b 5994 to 6468 2 to 476   capped   475/475
(100 %)
2 diff
(99.6 %id)
AA128500 uterus .b 6066 to 6514 1 to 450       450/450
(100 %)
6 diff
(98.7 %id)
BP231371 muscle .b 6093 to 6655 1 to 565   tiling clone,   565/582
(97 %)
23 diff
(96.1 %id)
BF218543 brain, glioblastoma .b 6163 to 6741 1 to 588       588/829
(70 %)
23 diff
(97.3 %id)
DB447522 testis .b 6192 to 6565 1 to 374       374/374
(100 %)
6 diff
(98.4 %id)
DB449304 testis .b 6192 to 6616 1 to 425   tiling clone,   425/425
(100 %)
1 diff
(99.8 %id)
BY994897   .b 6290 to 7006 10 to 724       715/724
(98 %)
6 diff
(99.2 %id)
BE548450 cervical carcinoma cell line, cervix .b 6377 to 7089 1 to 703       703/920
(76 %)
23 diff
(97.5 %id)
H93451 liver and spleen .b 6524 to 6948 1 to 436       436/471
(92 %)
15 diff
(96.9 %id)
BX104556 whole brain .b 6749 to 7315 576 to 12       565/576
(98 %)
0 diff
(100 %id)
AA004757 liver and spleen .b 6867 to 7313 447 to 1       447/447
(100 %)
8 diff
(98.3 %id)
EH338057   .b 6876 to 6949 1 to 74       74/74
(100 %)
0 diff
(100 %id)
AI989339   .b 6896 to 7312 1 to 415   AAA   415/415
(100 %)
2 diff
(99.6 %id)
T23550   .b 6938 to 7315 378 to 1       378/378
(100 %)
0 diff
(100 %id)
T39626 fetal spleen, Spleen .b 6940 to 7177 1 to 238       238/238
(100 %)
1 diff
(99.6 %id)
T39619 fetal spleen, Spleen .b 6940 to 7150 1 to 211       211/211
(100 %)
1 diff
(99.6 %id)
AA007230 whole brain .b 7003 to 7312 356 to 47   AAA   310/310
(100 %)
2 diff
(99.4 %id)
R46832 whole brain .b 7025 to 7312 309 to 18   AAA   292/294
(99 %)
14 diff
(95.3 %id)
F09223 brain, total brain .b 7057 to 7312 256 to 1       256/256
(100 %)
1 diff
(99.7 %id)
F10412 brain, total brain .b 7065 to 7312 248 to 1       248/248
(100 %)
0 diff
(100 %id)
CN315418 embryonic stem cells, cell lines H1, H7, andH9 .b 7066 to 7313 258 to 11   AAA Submitted on the opposite strand 248/248
(100 %)
6 diff
(97.6 %id)
FN123179 breast carcinoma .b 7098 to 7181 1 to 84       84/84
(100 %)
0 diff
(100 %id)
R38620 whole brain .b 7108 to 7312 225 to 19   AAA   207/207
(100 %)
4 diff
(98.1 %id)
AI557193 Prostate .b 7132 to 7604 200 to 685     Submitted on the opposite strand 486/989
(49 %)
40 diff
(96.0 %id)
AW629086 pooled .b 7144 to 7662 519 to 1       519/519
(100 %)
2 diff
(99.7 %id)
FN111367 breast carcinoma .b 7217 to 7296 82 to 1     Submitted on the opposite strand 82/82
(100 %)
1 diff
(98.8 %id)
TI_151809305   .b 7249 to 7932 73 to 752   tiling clone,   680/990
(68 %)
3 diff
(99.7 %id)
BQ022213 placenta .b 7283 to 7801 536 to 18   AAA   519/519
(100 %)
1 diff
(99.9 %id)
H93452 liver and spleen .b 7366 to 7777 420 to 1       420/427
(98 %)
11 diff
(97.5 %id)
T40701 fetal spleen, Spleen .b 7897 to 8123 227 to 1       227/227
(100 %)
6 diff
(97.4 %id)
AF085243 Kidney .c 1 to 8203 1 to 8201 I613V tiling clone, AAA   8201/8201
(100 %)
11 diff
(99.9 %id)
AI681124 carcinoid, lung .c 7429 to 7941 1 to 514     Submitted on the opposite strand 514/514
(100 %)
3 diff
(99.5 %id)
CD518356 White Matter .c 7458 to 8222 1 to 770       770/881
(87 %)
6 diff
(99.4 %id)
AI653572 ovary, tumor, 5 pooled (see description) .c 7462 to 7883 446 to 24   AAA   423/423
(100 %)
4 diff
(99.1 %id)
BG287737 bladder, transitional cell papilloma, cell line .c 7544 to 8285 1 to 738       738/870
(84 %)
28 diff
(96.8 %id)
DB514327 testis .c 7585 to 8009 1 to 425     Submitted on the opposite strand 425/425
(100 %)
0 diff
(100 %id)
AI783463 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 7585 to 7743 177 to 19   AAA   159/159
(100 %)
0 diff
(100 %id)
CR599803 thymus .c 7591 to 8206 616 to 1   tiling clone, Submitted on the opposite strand 616/616
(100 %)
0 diff
(100 %id)
AI628104 Kidney .c 7591 to 8201 612 to 2       611/612
(99 %)
0 diff
(100 %id)
BX415632 thymus .c 7615 to 8206 593 to 1     Submitted on the opposite strand 593/619
(95 %)
6 diff
(99.1 %id)
BX415631 thymus .c 7623 to 8206 7 to 588     Submitted on the opposite strand 582/588
(98 %)
6 diff
(99.0 %id)
EC452236 Prostate .c 7671 to 7794 1 to 118       118/118
(100 %)
7 diff
(94.1 %id)
DB512530 testis .c 7709 to 8009 1 to 299     Submitted on the opposite strand 299/299
(100 %)
3 diff
(99.0 %id)
AW190658 adenocarcinoma, Pancreas .c 7750 to 7964 215 to 1       215/215
(100 %)
0 diff
(100 %id)
BP381354 adipose tissue .d 1 to 616 1 to 616       616/616
(100 %)
9 diff
(98.6 %id)
AK000847 adipose tissue .d 1 to 1643 1 to 1643   tiling clone, available from FLJ, AAA   1643/1643
(100 %)
1 diff
(100.0 %id)
BE176691 head_neck .d 1411 to 2054 1 to 644   tiling clone,   644/644
(100 %)
15 diff
(97.7 %id)
AW192251 adenocarcinoma, Pancreas .e 1 to 436 436 to 1 exact tiling clone,   436/436
(100 %)
0 diff
(100 %id)
BF747807 breast .f 1 to 401 22 to 424 R3I D4V H5S E6R R7A ... tiling clone,   403/424
(95 %)
11 diff
(97.5 %id)
DA332845 hippocampus .g 1 to 559 2 to 560   tiling clone, capped   559/559
(100 %)
1 diff
(99.9 %id)
AI290527 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h-u 1 to 467 468 to 1 I11K L12F I13P T14I D15M ... tiling clone,   468/470
(99 %)
8 diff
(98.3 %id)
AI468588 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h-u 156 to 467 312 to 1       312/320
(97 %)
0 diff
(100 %id)
AL698157 human skeletal muscle .i-u 1 to 407 1 to 408 exact tiling clone,   408/408
(100 %)
2 diff
(99.6 %id)
R91493 liver and spleen .j-u 1 to 394 1 to 400 exact tiling clone,   400/402
(99 %)
7 diff
(98.3 %id)
BF329908 breast_normal .k-u 1 to 371 48 to 418 L3Q S8P G11E tiling clone,   371/442
(83 %)
7 diff
(98.5 %id)
GD147264   .l 1 to 186 1 to 185 exact tiling clone,   185/192
(96 %)
5 diff
(97.4 %id)
AA090665   Gene ZNF236, variant not shown         Suspected internal deletion, this clone was ignored    
BF328969 breast_normal Gene ZNF236, variant not shown         This clone was ignored    
BF852253 lung_normal Gene ZNF236, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
DB312241 thalamus Gene ZNF236, variant not shown         This clone was ignored    
DA402818 thalamus Gene ZNF236, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i-u, .j-u, .k-u, .l Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC