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Gene ZNF235TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
108 supporting clones for gene ZNF235 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC419607 uterus .a 1 to 759 1 to 760   tiling clone,   760/760
(100 %)
4 diff
(99.5 %id)
DC426944 uterus .a 2753 to 3215 463 to 1   tiling clone,   463/464
(99 %)
16 diff
(96.6 %id)
AK300317 placenta .b 1 to 3186 1 to 3186 H296P tiling clone,   3186/3186
(100 %)
2 diff
(100.0 %id)
NM_004234.4   .b 1 to 3190 1 to 3190 exact RefSeq,   3190/3190
(100 %)
0 diff
(100 %id)
DC381662 placenta .b 1 to 587 1 to 587       587/587
(100 %)
0 diff
(100 %id)
DC386294   .b 1 to 565 1 to 567       567/567
(100 %)
2 diff
(99.7 %id)
AF027513   .b 9 to 1621 1 to 1613   tiling clone,   1613/1613
(100 %)
2 diff
(99.9 %id)
DR005270 Prostate .b 17 to 792 1 to 774       774/774
(100 %)
11 diff
(98.6 %id)
AK315242 thymus .b 26 to 2320 1 to 2294       2294/2294
(100 %)
4 diff
(99.9 %id)
DB150642 thymus .b 27 to 596 2 to 572   capped   571/572
(99 %)
2 diff
(99.7 %id)
TI_1320130925   .b 467 to 1662 1213 to 1       1213/1287
(94 %)
47 diff
(96.4 %id)
TI_2194577897   .b 482 to 1580 1 to 1097       1097/1193
(91 %)
6 diff
(99.5 %id)
TI_2194577692   .b 484 to 1699 1 to 1223       1223/1301
(94 %)
43 diff
(96.7 %id)
TI_2194577685   .b 485 to 1599 7 to 1120       1114/1276
(87 %)
7 diff
(99.5 %id)
TI_2194577904   .b 487 to 1608 9 to 1140       1132/1235
(91 %)
35 diff
(97.2 %id)
TI_1320129855   .b 495 to 1606 1 to 1108       1108/1183
(93 %)
24 diff
(98.0 %id)
DB124861 thymus .b 578 to 1133 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
TI_2194577686   .b 685 to 1854 1 to 1156       1156/1270
(91 %)
26 diff
(98.0 %id)
TI_2194577693   .b 687 to 1910 1 to 1212       1212/1266
(95 %)
64 diff
(95.0 %id)
TI_1320129805   .b 687 to 1856 1 to 1163       1163/1273
(91 %)
19 diff
(98.6 %id)
TI_2194577905   .b 699 to 1772 10 to 1082       1073/1215
(88 %)
9 diff
(99.3 %id)
TI_2194577898   .b 712 to 1602 14 to 898       885/1103
(80 %)
10 diff
(99.1 %id)
DB258410 uterus .b 870 to 1439 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
TI_1320129804   .b 991 to 1699 510 to 1217       708/782
(90 %)
26 diff
(96.7 %id)
TI_1320129856   .b 991 to 1789 300 to 1088       789/877
(89 %)
21 diff
(97.7 %id)
TI_2194577906   .b 1031 to 2192 1 to 1150       1150/1203
(95 %)
30 diff
(97.6 %id)
TI_2194577694   .b 1032 to 2225 1 to 1186       1186/1272
(93 %)
30 diff
(97.7 %id)
TI_1320129857   .b 1032 to 2091 1 to 1052       1052/1167
(90 %)
26 diff
(97.8 %id)
TI_2194577687   .b 1033 to 2168 2 to 1128       1127/1265
(89 %)
25 diff
(98.1 %id)
TI_2194577899   .b 1034 to 2028 1 to 994       994/1181
(84 %)
18 diff
(98.5 %id)
TI_1320129806   .b 1050 to 2316 21 to 1283       1263/1279
(98 %)
30 diff
(97.7 %id)
TI_2194579932   .b 1212 to 2392 1234 to 64       1171/1237
(94 %)
0 diff
(100 %id)
TI_2194577688   .b 1239 to 2386 1 to 1140       1140/1259
(90 %)
18 diff
(98.6 %id)
TI_1320129851   .b 1241 to 2389 1 to 1143       1143/1191
(95 %)
18 diff
(98.5 %id)
TI_2194579933   .b 1248 to 2389 1193 to 64       1130/1233
(91 %)
0 diff
(100 %id)
TI_2194577681   .b 1250 to 2392 11 to 1153       1143/1274
(89 %)
13 diff
(99.0 %id)
TI_2194577893   .b 1251 to 2341 10 to 1102       1093/1202
(90 %)
20 diff
(98.4 %id)
TI_2194577900   .b 1252 to 2361 10 to 1118       1109/1195
(92 %)
20 diff
(98.4 %id)
TI_2194579926   .b 1277 to 2392 1177 to 64       1114/1236
(90 %)
0 diff
(100 %id)
TI_2194579927   .b 1283 to 2389 1160 to 64       1097/1218
(90 %)
0 diff
(100 %id)
AV745182 Pituitary .b 1330 to 1866 1 to 538       538/684
(78 %)
54 diff
(92.2 %id)
TI_2194576385   .b 1443 to 2392 1014 to 67       948/1014
(93 %)
0 diff
(100 %id)
X78929   .b 1469 to 2095 1 to 627       627/627
(100 %)
1 diff
(99.9 %id)
TI_2194576389   .b 1487 to 2389 970 to 68       903/973
(92 %)
0 diff
(100 %id)
CB145762 Liver .b 1500 to 2023 1 to 524       524/524
(100 %)
0 diff
(100 %id)
C15713   .b 1637 to 1850 1 to 214       214/214
(100 %)
2 diff
(99.1 %id)
TI_2194577689   .b 1656 to 2389 1 to 731       731/1256
(58 %)
6 diff
(99.6 %id)
TI_2194577682   .b 1659 to 2392 1 to 735       735/1236
(59 %)
6 diff
(99.6 %id)
TI_2194577901   .b 1671 to 2389 13 to 728       716/1187
(60 %)
3 diff
(99.8 %id)
TI_2194577894   .b 1677 to 2392 16 to 731       716/1196
(59 %)
7 diff
(99.5 %id)
BG822263 adenocarcinoma cell line, colon .b 1928 to 2627 1 to 699       699/699
(100 %)
5 diff
(99.3 %id)
TI_2194577683   .b 2000 to 2392 1 to 391       391/1284
(30 %)
9 diff
(99.3 %id)
TI_2194577895   .b 2002 to 2392 1 to 391       391/1208
(32 %)
10 diff
(99.2 %id)
AF027514   .b 2010 to 3091 1 to 1081       1081/1090
(99 %)
11 diff
(99.0 %id)
TI_2194577902   .b 2018 to 2389 12 to 381       370/1194
(30 %)
6 diff
(99.5 %id)
TI_2194577690   .b 2019 to 2389 11 to 380       370/1253
(29 %)
3 diff
(99.8 %id)
AA007262 liver and spleen .b 2053 to 2586 1 to 535       535/535
(100 %)
1 diff
(99.9 %id)
AV751933 Pituitary .b 2087 to 2527 1 to 443       443/523
(84 %)
5 diff
(99.1 %id)
CR619160 Neuroblastoma Cot 25-normalized .b 2110 to 3160 1 to 1051       1051/1051
(100 %)
0 diff
(100 %id)
BX376305 Neuroblastoma Cot 25-normalized .b 2110 to 3160 1 to 1041       1041/1041
(100 %)
15 diff
(98.6 %id)
AA694208 liver and spleen .b 2134 to 2779 650 to 5       646/655
(98 %)
0 diff
(100 %id)
TI_149312205   .b 2362 to 3186 895 to 85   AAA   811/924
(87 %)
19 diff
(98.0 %id)
BX095737 uterus .b 2471 to 2719 1 to 249       249/249
(100 %)
0 diff
(100 %id)
AA004270 liver and spleen .b 2578 to 3186 608 to 1       608/611
(99 %)
15 diff
(97.6 %id)
AI281514 lymph node, mantle cell lymphoma .b 2723 to 3188 467 to 2       466/467
(99 %)
0 diff
(100 %id)
DB520659 testis .b 2734 to 3189 1 to 456   tiling clone, Submitted on the opposite strand 456/456
(100 %)
0 diff
(100 %id)
AI192112 uterus .b 2808 to 3172 379 to 15       365/379
(96 %)
0 diff
(100 %id)
BU689546 lung .b 2839 to 3186 366 to 19   AAA   348/348
(100 %)
0 diff
(100 %id)
BX956086   .c 1 to 686 1 to 686   tiling clone,   686/686
(100 %)
0 diff
(100 %id)
DB455250 testis .c 1 to 726 1 to 722       722/724
(99 %)
14 diff
(98.1 %id)
TI_2194576002   .c 11 to 1187 48 to 1212   tiling clone,   1165/1290
(90 %)
23 diff
(98.3 %id)
TI_2194579915   .c 11 to 1064 43 to 1081       1039/1157
(89 %)
24 diff
(98.0 %id)
TI_2194579920   .c 11 to 1153 43 to 1176       1134/1228
(92 %)
22 diff
(98.3 %id)
TI_1320130379   .c 11 to 458 451 to 2       450/1224
(36 %)
2 diff
(99.9 %id)
BC117215 Liver, PCR rescued clones .c 16 to 2375 1 to 2360 H292P tiling clone,   2360/2360
(100 %)
2 diff
(100.0 %id)
BC143482 Liver, PCR rescued clones .c 16 to 2375 1 to 2360 Q502R T618A N637D T702A     2360/2360
(100 %)
7 diff
(99.8 %id)
BC105807 Pooled, 40 cell lines .c 22 to 625 1 to 604   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 604/626
(96 %)
5 diff
(99.3 %id)
BU943641 mixed (pool of 40 RNAs) .c 23 to 620 1 to 598       598/602
(99 %)
2 diff
(99.7 %id)
DA951597 Spleen .c 27 to 577 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
TI_1320130377   .c 54 to 1075 1030 to 9       1022/1230
(83 %)
14 diff
(98.9 %id)
DC415675 trachea .d 1 to 554 1 to 555   tiling clone,   555/555
(100 %)
1 diff
(99.9 %id)
DB237158 trachea .d 21 to 597 2 to 581 A22T L145F E146G R147E E148G ... tiling clone, capped   580/580
(100 %)
4 diff
(99.4 %id)
TI_2194576006   .e 1 to 1150 46 to 1179 exact tiling clone,   1134/1269
(89 %)
25 diff
(98.1 %id)
TI_2194579921   .e 1 to 1112 42 to 1142 exact     1101/1208
(91 %)
19 diff
(98.5 %id)
BC143484 Liver, PCR rescued clones .e 4 to 2367 1 to 2362   tiling clone,   2362/2362
(100 %)
2 diff
(100.0 %id)
AW968806   .f-u 1 to 491 1 to 491   tiling clone,   491/492
(99 %)
1 diff
(99.8 %id)
BU101796   .f-u 292 to 957 1 to 672   tiling clone,   672/672
(100 %)
9 diff
(98.7 %id)
FN054963 breast carcinoma .f-u 299 to 415 1 to 118       118/118
(100 %)
1 diff
(99.2 %id)
FN061424 breast carcinoma .f-u 389 to 451 1 to 61       61/61
(100 %)
2 diff
(96.8 %id)
CU448015 epidermis .f-u 923 to 1328 8 to 412   tiling clone,   405/412
(98 %)
6 diff
(98.6 %id)
BQ338775 nervous_normal .f-u 976 to 1501 1 to 524   tiling clone,   524/524
(100 %)
11 diff
(98.0 %id)
AW868637 stomach_normal .f-u 1037 to 1213 1 to 178       178/179
(99 %)
9 diff
(95.0 %id)
DC315875 amygdala .g 1 to 543 1 to 543 exact tiling clone,   543/543
(100 %)
1 diff
(99.9 %id)
AK307103 amygdala .g 7 to 961 1 to 955   tiling clone,   955/955
(100 %)
0 diff
(100 %id)
DC317439 amygdala .g 7 to 559 1 to 553       553/553
(100 %)
0 diff
(100 %id)
AA285224   .g 31 to 189 1 to 161       161/164
(98 %)
20 diff
(87.9 %id)
CB215221 normal endometrium, late proliferativephase, cycle day 13, uterus .h 1 to 629 6 to 634 exact tiling clone,   634/634
(100 %)
0 diff
(100 %id)
BE388315 endometrium, adenocarcinoma cell line, uterus .i 1 to 616 1 to 615 exact tiling clone, available from MGC,   615/616
(99 %)
2 diff
(99.7 %id)
BE727441 melanotic melanoma, skin .i 1 to 714 1 to 715 exact tiling clone,   715/720
(99 %)
11 diff
(98.5 %id)
DB513102.
matches multiple genes
testis .j-u 1 to 701 709 to 12 N73K S74F D75R N76Y K86N ... tiling clone, also hits gene ZNF233 698/709
(98 %)
0 diff
(100 %id)
DB518116.
matches multiple genes
testis .j-u 1 to 432 432 to 1   tiling clone, also hits gene taveeby 432/432
(100 %)
0 diff
(100 %id)
BF978484 melanotic melanoma, high MDR, skin .k 1 to 525 1 to 546 E9R L11A W12L M13D K14E ... tiling clone,   546/916
(59 %)
21 diff
(97.8 %id)
BF692701 melanotic melanoma, high MDR, skin .k 1 to 672 1 to 662 W12G M13* tiling clone,   662/875
(75 %)
17 diff
(98.1 %id)
AI904333 breast .k 197 to 510 1 to 318   tiling clone,   318/322
(98 %)
10 diff
(96.9 %id)
BF929093 nervous_tumor Gene ZNF235, variant not shown              
AK226126 brain Gene ZNF235, variant not shown       AAA      
BC002663 Uterus, endometrium adenocarcinoma Gene ZNF235, variant not shown       available from MGC, AAA This clone was ignored    
BC002800 Placenta, choriocarcinoma Gene ZNF235, variant not shown       available from MGC, AAA This clone was ignored    
DB159878 thymus Gene ZNF235, variant not shown       capped      
DB346762 thymus Gene ZNF235, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g, .h, .i, .j-u, .k Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C