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Gene ZNF225TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
77 supporting clones for gene ZNF225 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BP280187   .a 1 to 603 1 to 603   tiling clone,   603/603
(100 %)
1 diff
(99.9 %id)
AK313301 Spleen .a 58 to 2461 1 to 2404 exact tiling clone,   2404/2404
(100 %)
1 diff
(100.0 %id)
DC389736 Spleen .a 58 to 657 1 to 600       600/600
(100 %)
0 diff
(100 %id)
AA746283 germinal center B cell .a 626 to 1193 1 to 568   tiling clone,   568/572
(99 %)
3 diff
(99.5 %id)
BM924872 pooled colon, kidney, stomach .a 1963 to 3008 9 to 1063   tiling clone,   1055/1109
(95 %)
38 diff
(96.6 %id)
BQ373092 prostate_tumor .a 2476 to 2828 354 to 2   tiling clone,   353/354
(99 %)
0 diff
(100 %id)
BQ373099 prostate_tumor .a 2476 to 2828 354 to 2       353/354
(99 %)
0 diff
(100 %id)
AA455397 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2883 to 3305 1 to 415   tiling clone,   415/415
(100 %)
11 diff
(97.4 %id)
AA748400 germinal center B cell .a 3037 to 3407 375 to 5   tiling clone,   371/378
(98 %)
0 diff
(100 %id)
BF218047 brain, glioblastoma .a 3222 to 3844 1 to 624   tiling clone,   624/858
(72 %)
12 diff
(98.7 %id)
TI_159709719   .a 3454 to 4403 967 to 19       949/1068
(88 %)
0 diff
(100 %id)
BF516605   .a 3647 to 4254 1 to 608   tiling clone, Submitted on the opposite strand 608/608
(100 %)
10 diff
(98.4 %id)
BU633034 cell lines, Chondrosarcoma .a 3781 to 4541 777 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (24/24 A in genome downstream of last aligned base) 759/759
(100 %)
4 diff
(99.5 %id)
EL949676 eyeball .a 3898 to 4379 38 to 519       482/519
(92 %)
6 diff
(98.9 %id)
AA455064 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3900 to 4378 479 to 1       479/479
(100 %)
0 diff
(100 %id)
D62272   .a 3934 to 4289 1 to 354       354/354
(100 %)
2 diff
(99.5 %id)
TI_153960748   .a 3952 to 4541 79 to 669   AAA Possibly primed on the genome, locally A rich (24/24 A in genome downstream of last aligned base) 591/591
(100 %)
16 diff
(97.3 %id)
AA455989 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3957 to 4378 422 to 1       422/422
(100 %)
0 diff
(100 %id)
AW241760 pooled .a 4019 to 4403 389 to 5       385/389
(98 %)
0 diff
(100 %id)
AI311449 bronchioalveolar carcinoma, lung .a 4059 to 4395 5 to 341     Submitted on the opposite strand 337/385
(87 %)
6 diff
(98.5 %id)
AI377632 bronchioalveolar carcinoma, lung .a 4059 to 4399 34 to 373   AAA Submitted on the opposite strand 340/373
(91 %)
6 diff
(98.4 %id)
AA456037 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4092 to 4378 289 to 1       289/289
(100 %)
2 diff
(99.4 %id)
AA507442 breast .a 4097 to 4548 452 to 1   tiling clone,   452/452
(100 %)
0 diff
(100 %id)
BE695021 breast .a 4113 to 4391 279 to 1       279/279
(100 %)
0 diff
(100 %id)
BE695043 breast .a 4113 to 4391 1 to 279       279/279
(100 %)
1 diff
(99.7 %id)
BF953683 nervous_normal .a 4113 to 4228 1 to 117       117/120
(97 %)
3 diff
(97.5 %id)
N53708 multiple sclerosis lesions .a 4161 to 4366 1 to 206       206/206
(100 %)
0 diff
(100 %id)
AI954443 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 4190 to 4535 346 to 1       346/346
(100 %)
0 diff
(100 %id)
AI497743 lymph node, lymphoma, follicular mixed small and largecell .a 4349 to 4533 185 to 1       185/185
(100 %)
0 diff
(100 %id)
AK292437 testis .b 1 to 2495 1 to 2495 exact tiling clone,   2495/2495
(100 %)
0 diff
(100 %id)
DC400766 testis .b 1 to 556 1 to 556       556/556
(100 %)
0 diff
(100 %id)
EG328378 pooled .b 5 to 530 526 to 1     Submitted on the opposite strand 526/526
(100 %)
1 diff
(99.9 %id)
AF187991   .b 31 to 2497 1 to 2465 R144K Q145T K146E P147T L219Q     2465/2466
(99 %)
10 diff
(99.6 %id)
NM_013362.2   .b 38 to 2768 1 to 2731 exact RefSeq,   2731/2731
(100 %)
0 diff
(100 %id)
DA537943 Kidney .b 39 to 624 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
EG328377 pooled .b 40 to 543 1 to 504       504/504
(100 %)
0 diff
(100 %id)
DA337224 hippocampus .b 43 to 619 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
AL701679 human skeletal muscle .b 57 to 502 1 to 446       446/446
(100 %)
1 diff
(99.8 %id)
DA027156   .b 58 to 633 2 to 582   capped   581/581
(100 %)
6 diff
(99.0 %id)
DA324140 hippocampus .b 59 to 597 2 to 540   capped   539/539
(100 %)
2 diff
(99.7 %id)
DB110116 thymus .b 84 to 660 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA788668 brain .b 85 to 568 2 to 486   capped   485/485
(100 %)
1 diff
(99.8 %id)
AK223477 synovial membrane .b 86 to 2448 1 to 2363 exact     2363/2363
(100 %)
0 diff
(100 %id)
CN304670 embryonic stem cells, cell lines H1, H7, andH9 .b 86 to 639 13 to 568       556/568
(97 %)
8 diff
(98.6 %id)
DN992818 brain, whole brain .b 89 to 461 9 to 382       374/382
(97 %)
7 diff
(98.2 %id)
CN304669 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 110 to 728 1 to 619       619/619
(100 %)
0 diff
(100 %id)
DA219419 brain .b 122 to 579 2 to 459   capped   458/458
(100 %)
0 diff
(100 %id)
DA247927 brain .b 122 to 629 2 to 509   capped   508/508
(100 %)
0 diff
(100 %id)
BC108912 PCR rescued clones .b 208 to 2451 1 to 2244 exact     2244/2244
(100 %)
3 diff
(99.9 %id)
BP219331 caudate nucleus .c-u 1 to 582 1 to 583   tiling clone,   583/583
(100 %)
1 diff
(99.9 %id)
DA164828 amygdala .c-u 278 to 855 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
BX349323   .c-u 315 to 1225 1 to 918   tiling clone,   918/919
(99 %)
8 diff
(99.2 %id)
BX372430   .c-u 471 to 1328 864 to 11       854/864
(98 %)
0 diff
(100 %id)
AF027138 brain .c-u 499 to 659 1 to 161       161/162
(99 %)
5 diff
(97.0 %id)
DB151567 thymus .c-u 516 to 1084 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
CN304668 embryonic stem cells, DMSO-treated H9 cellline .c-u 559 to 1293 1 to 735       735/735
(100 %)
0 diff
(100 %id)
AW504521 lymph .c-u 671 to 991 8 to 328       321/328
(97 %)
6 diff
(98.2 %id)
TI_154160746   .c-u 671 to 1249 68 to 648       581/582
(99 %)
33 diff
(94.4 %id)
BP366699 thymus .c-u 920 to 1493 1 to 575       575/576
(99 %)
26 diff
(95.5 %id)
CA976054 sciatic nerve .c-u 995 to 1913 1 to 923   tiling clone,   923/924
(99 %)
7 diff
(99.3 %id)
BP289154 lung .c-u 1146 to 1727 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
BX401927   .c-u 1165 to 2119 948 to 1       948/952
(99 %)
9 diff
(99.1 %id)
BP420408 small intestine .c-u 1218 to 1787 1 to 570     Submitted on the opposite strand 570/570
(100 %)
2 diff
(99.7 %id)
BF876105 lung_tumor .c-u 1475 to 1878 407 to 3     Submitted on the opposite strand 405/407
(99 %)
0 diff
(100 %id)
BG058494 blood, lymphocyte .c-u 1687 to 2198 518 to 7   tiling clone,   512/518
(98 %)
0 diff
(100 %id)
AW844910 colon .c-u 1798 to 2062 7 to 271       265/271
(97 %)
6 diff
(97.8 %id)
FN060781 breast carcinoma .c-u 1818 to 1900 85 to 1     Submitted on the opposite strand 85/86
(98 %)
3 diff
(96.6 %id)
DC394720 testis .d 1 to 551 1 to 554 V16A L98F F99V S100Q H101S ... tiling clone,   554/558
(99 %)
6 diff
(99.0 %id)
DC397396 testis .d 1 to 552 1 to 552 exact tiling clone,   552/552
(100 %)
1 diff
(99.9 %id)
CR615158 B cells (Ramos cell line) Cot 25-normalized .e 1 to 2538 1 to 2538 exact tiling clone,   2538/2538
(100 %)
0 diff
(100 %id)
BX401928   .e 1 to 1045 1 to 1041       1041/1085
(95 %)
20 diff
(98.2 %id)
AK093750 thymus .f-u 1 to 2246 2 to 2247 exact tiling clone, available from FLJ,   2247/2247
(100 %)
39 diff
(98.3 %id)
AX748287   .f-u 1 to 2246 2 to 2247 exact     2247/2247
(100 %)
39 diff
(98.3 %id)
DB109156 thymus .f-u 1 to 572 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DB343191 thymus .f-u 1708 to 2246 539 to 1       539/539
(100 %)
38 diff
(93.0 %id)
DB158304 thymus .g-u 1 to 587 2 to 589 W14L S15V L16S V17C N18* tiling clone, capped   588/588
(100 %)
1 diff
(99.9 %id)
BX470675   .g-u 3 to 485 1 to 483       483/483
(100 %)
1 diff
(99.8 %id)
DC400259 testis .h 1 to 541 1 to 541 exact tiling clone,   541/541
(100 %)
0 diff
(100 %id)
AK302106 testis Gene ZNF225, variant not shown         Suspected internal deletion, this clone was ignored    
DC397626 testis Gene ZNF225, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d, .e, .f-u, .g-u, .h Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC