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Gene ZCCHC8TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
233 supporting clones for gene ZCCHC8 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB048019 testis .a 1 to 546 2 to 548   tiling clone, capped   547/550
(99 %)
2 diff
(99.7 %id)
DB043933 testis .a 17 to 593 2 to 581   capped   580/580
(100 %)
3 diff
(99.5 %id)
DB456426 testis .a 77 to 572 1 to 496       496/496
(100 %)
1 diff
(99.8 %id)
BI458874 testis .a 83 to 801 1 to 736       736/739
(99 %)
44 diff
(94.1 %id)
BP228612 brain .a 84 to 659 1 to 576       576/581
(99 %)
6 diff
(99.0 %id)
BP230880 brain .a 84 to 665 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP250428 hippocampus .a 84 to 670 1 to 587       587/587
(100 %)
0 diff
(100 %id)
DA292366 hippocampus .a 85 to 668 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA309393 hippocampus .a 85 to 547 2 to 464   capped   463/463
(100 %)
0 diff
(100 %id)
DA493415 brain .a 85 to 634 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA566931 heart .a 85 to 389 2 to 306   capped   305/305
(100 %)
0 diff
(100 %id)
DA644043   .a 85 to 668 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA650605   .a 85 to 632 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA741280   .a 85 to 650 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA748097   .a 85 to 648 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
DA752995   .a 85 to 662 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA773546 brain .a 85 to 649 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA821807 pericardium .a 85 to 643 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB078315 testis .a 85 to 655 2 to 572   capped   571/572
(99 %)
0 diff
(100 %id)
DB143881 thymus .a 85 to 637 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DB179812 kidney, tumor tissue .a 85 to 642 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DB180021 kidney, tumor tissue .a 85 to 632 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DB272519 uterus .a 85 to 630 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DA708301   .a 87 to 669 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
BP335782 coronary artery .a 88 to 668 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA462560 cord Blood .a 91 to 631 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
AK074638 whole embryo, mainly body .a 102 to 2954 1 to 2853 E582G tiling clone, available from FLJ,   2853/2853
(100 %)
1 diff
(100.0 %id)
NM_017612.2   .a 102 to 2963 1 to 2862 exact RefSeq, AAA   2862/2862
(100 %)
0 diff
(100 %id)
DA391473 thalamus .a 103 to 635 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA573018 whole embryo, mainly body .a 103 to 808 2 to 708   capped   707/714
(99 %)
2 diff
(99.8 %id)
DA733974   .a 103 to 673 2 to 570   capped   569/569
(100 %)
3 diff
(99.5 %id)
BG392572 embryonal carcinoma, cell line, testis .a 104 to 796 1 to 687       687/844
(81 %)
14 diff
(98.4 %id)
DA734499   .a 105 to 654 2 to 551   capped   550/557
(98 %)
5 diff
(99.2 %id)
BP238534 Liver .a 110 to 705 1 to 596       596/596
(100 %)
7 diff
(98.9 %id)
DA441294 tongue, tumor tissue .a 111 to 687 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DA483467 brain .a 111 to 839 2 to 734   capped   733/760
(96 %)
8 diff
(99.0 %id)
DR001375 fetal brain .a 111 to 858 1 to 748       748/748
(100 %)
6 diff
(99.2 %id)
AA326367 brain, cerebellum .a 125 to 357 1 to 233       233/233
(100 %)
1 diff
(99.6 %id)
AW962212   .a 126 to 579 1 to 454       454/459
(98 %)
1 diff
(99.8 %id)
BI918480 brain .a 129 to 840 25 to 730       706/733
(96 %)
8 diff
(99.0 %id)
TI_57238588   .a 129 to 840 25 to 730       706/733
(96 %)
8 diff
(99.0 %id)
AK027702   .a 131 to 2733 1 to 2603 E20G S461G available from FLJ,   2603/2603
(100 %)
2 diff
(100.0 %id)
DA737448   .a 132 to 965 2 to 844   capped   843/847
(99 %)
17 diff
(98.0 %id)
BP244196 Liver .a 140 to 689 1 to 550       550/550
(100 %)
4 diff
(99.3 %id)
DA602283   .a 142 to 612 2 to 479   capped   478/478
(100 %)
9 diff
(98.2 %id)
DA645451   .a 142 to 730 2 to 590   capped   589/590
(99 %)
1 diff
(99.9 %id)
BM920805 pooled brain, lung, testis .a 156 to 965 20 to 834       815/1124
(72 %)
20 diff
(98.3 %id)
CN365081 embryonic stem cells, cell lines H1, H7, andH9 .a 158 to 531 1 to 376       376/376
(100 %)
3 diff
(99.3 %id)
BC065918 Brain, Lung, Testis, adult, pooled whole .a 161 to 2957 1 to 2797 A326V tiling clone, available from MGC, AAA   2797/2797
(100 %)
3 diff
(99.9 %id)
CN365080 embryonic stem cells, cell lines H1, H7, andH9 .a 171 to 733 1 to 562       562/562
(100 %)
3 diff
(99.5 %id)
BG719231 testis .a 196 to 666 71 to 533       463/534
(86 %)
15 diff
(97.2 %id)
DA939426 Spleen .a 212 to 768 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
BM148899 leukopheresis .a 212 to 727 1 to 516       516/516
(100 %)
1 diff
(99.9 %id)
DA551287   .a 215 to 730 2 to 516   capped   515/515
(100 %)
1 diff
(99.9 %id)
DA888627   .a 216 to 784 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA509460 brain .a 217 to 775 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
DA582199 lung .a 217 to 773 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA633900 Kidney .a 217 to 803 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
DA653624   .a 217 to 750 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
BX279716 leiomyosarcoma, uterus .a 218 to 726 1 to 509       509/509
(100 %)
0 diff
(100 %id)
BQ230988 leiomyosarcoma, uterus .a 219 to 1109 1 to 899       897/993
(90 %)
17 diff
(98.3 %id)
DA384984 thalamus .a 221 to 795 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DB239999 trachea .a 223 to 801 2 to 583   capped   582/582
(100 %)
3 diff
(99.5 %id)
DA434751 tongue, tumor tissue .a 224 to 675 2 to 458   capped   457/457
(100 %)
6 diff
(98.7 %id)
DA677852   .a 224 to 815 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
DA715748   .a 224 to 761 2 to 544   capped   543/543
(100 %)
6 diff
(98.9 %id)
DA818668   .a 224 to 780 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
AA233574 brain, neuroepithelial cells .a 238 to 571 1 to 334       334/334
(100 %)
4 diff
(98.9 %id)
BX447513 B cells (Ramos cell line) .a 244 to 1163 1 to 915       915/915
(100 %)
10 diff
(99.0 %id)
CN365082 embryonic stem cells, cell lines H1, H7, andH9 .a 251 to 817 1 to 568       568/568
(100 %)
1 diff
(99.9 %id)
DA745756   .a 303 to 867 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA744977   .a 453 to 1018 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
BG221209   .a 471 to 1238 1 to 768       768/768
(100 %)
5 diff
(99.4 %id)
DC348425   .a 548 to 1376 1 to 828       828/858
(96 %)
14 diff
(98.4 %id)
DA829931 placenta .a 582 to 1298 2 to 718   capped   717/718
(99 %)
9 diff
(98.8 %id)
BG898547 cartilage .a 597 to 1188 79 to 670       592/608
(97 %)
6 diff
(99.1 %id)
AK291174   .a 665 to 2732 1 to 2068       2068/2068
(100 %)
1 diff
(100.0 %id)
DA748376   .a 666 to 1230 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA533689 brain .a 667 to 1129 2 to 464   capped   463/463
(100 %)
0 diff
(100 %id)
BX447512 B cells (Ramos cell line) .a 1966 to 2732 932 to 167       766/773
(99 %)
0 diff
(100 %id)
DB366580   .a 2140 to 2728 586 to 1       586/588
(99 %)
12 diff
(98.0 %id)
DB370051   .a 2156 to 2733 576 to 1       576/611
(94 %)
9 diff
(98.6 %id)
DB374894 placenta .a 2246 to 2728 484 to 1       484/486
(99 %)
13 diff
(97.4 %id)
DB360156 whole embryo, mainly body .a 2365 to 2954 590 to 1       590/592
(99 %)
12 diff
(98.0 %id)
DB365984   .a 2372 to 2954 584 to 1       584/587
(99 %)
13 diff
(97.8 %id)
BX405042 B cells (Ramos cell line) .b 1 to 913 1 to 911   tiling clone,   911/911
(100 %)
9 diff
(99.1 %id)
BX405041 B cells (Ramos cell line) .b 1394 to 2348 956 to 1   tiling clone,   956/956
(100 %)
4 diff
(99.6 %id)
DB041262 testis .c 1 to 546 2 to 548   tiling clone, capped   547/547
(100 %)
1 diff
(99.9 %id)
DB337860 testis .c 1803 to 2339 538 to 1   tiling clone,   538/538
(100 %)
1 diff
(99.9 %id)
DA333758 hippocampus .d 1 to 593 2 to 594   tiling clone, capped   593/593
(100 %)
3 diff
(99.5 %id)
CN365078 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 25 to 606 1 to 582   tiling clone,   582/582
(100 %)
2 diff
(99.7 %id)
DR000979 fetal brain .d 148 to 671 8 to 538       531/538
(98 %)
8 diff
(98.6 %id)
DB461355 testis .d 206 to 695 490 to 1   tiling clone, Submitted on the opposite strand 490/490
(100 %)
1 diff
(99.8 %id)
AL157433 testis .d 394 to 4757 1 to 4364 exact tiling clone, available from DKFZ, AAA   4364/4364
(100 %)
4 diff
(100.0 %id)
AA333105 Embryo, 8 weeks .d 469 to 821 1 to 358       358/359
(99 %)
7 diff
(98.1 %id)
DB443798 testis .d 511 to 958 1 to 448       448/448
(100 %)
0 diff
(100 %id)
BU899255 Spleen .d 664 to 1174 1 to 513       513/1035
(49 %)
12 diff
(98.9 %id)
DW458110 Liver .d 880 to 1021 16 to 157       142/157
(90 %)
6 diff
(96.2 %id)
AL157434 testis .e 1 to 2928 620 to 3550 M425V tiling clone, available from DKFZ, AAA   2938/3550
(82 %)
7 diff
(99.9 %id)
DA731127   .e 817 to 1657 2 to 840   capped   839/848
(98 %)
12 diff
(98.6 %id)
BC017704 Duodenum, adenocarcinoma .e 853 to 2923 13 to 2083 exact available from MGC, AAA   2071/2071
(100 %)
3 diff
(99.9 %id)
BP351934   .e 953 to 1534 1 to 582       582/582
(100 %)
0 diff
(100 %id)
FN163931 breast carcinoma .e 1002 to 1062 61 to 1     Submitted on the opposite strand 61/61
(100 %)
0 diff
(100 %id)
BE006073 breast_normal .e 1016 to 1424 432 to 24     Submitted on the opposite strand 409/432
(94 %)
5 diff
(98.9 %id)
BQ224742 embryonal carcinoma, cell line, testis .e 1121 to 1870 1 to 762       762/788
(96 %)
17 diff
(97.9 %id)
BP226810   .e 1126 to 1706 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BG999170 head_neck .e 1145 to 1480 27 to 363       337/371
(90 %)
12 diff
(96.8 %id)
BE159986 head_neck .e 1198 to 1618 424 to 4     Submitted on the opposite strand 421/424
(99 %)
1 diff
(99.8 %id)
BE160039 head_neck .e 1198 to 1618 424 to 4     Submitted on the opposite strand 421/424
(99 %)
1 diff
(99.8 %id)
H59370 liver and spleen .e 1228 to 1693 1 to 473       473/473
(100 %)
15 diff
(96.9 %id)
C15601   .e 1229 to 1444 1 to 216       216/216
(100 %)
0 diff
(100 %id)
D53547   .e 1229 to 1496 1 to 266       266/266
(100 %)
4 diff
(98.5 %id)
D81577 brain .e 1229 to 1497 1 to 270       270/270
(100 %)
1 diff
(99.7 %id)
BE866129 bladder, carcinoma, cell line .e 1239 to 1878 1 to 641       641/642
(99 %)
13 diff
(98.0 %id)
AA704462 liver and spleen .e 1244 to 1657 455 to 43       413/455
(90 %)
3 diff
(99.4 %id)
BE181354 head_neck .e 1269 to 1606 1 to 339       339/377
(89 %)
12 diff
(96.9 %id)
CN481601 eye .e 1280 to 1900 1 to 621       621/621
(100 %)
0 diff
(100 %id)
AI248229 liver and spleen .e 1323 to 1658 378 to 43       336/378
(88 %)
0 diff
(100 %id)
T34317 blood, white blood cells .e 1334 to 1698 1 to 363     Submitted on the opposite strand 363/363
(100 %)
6 diff
(98.4 %id)
CN365079 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .e 1336 to 1992 1 to 655       657/655
(100 %)
10 diff
(98.5 %id)
W01568 liver and spleen .e 1336 to 1676 1 to 342       342/342
(100 %)
1 diff
(99.8 %id)
EB386695 eye, optic nerve .e 1338 to 2206 2 to 870       869/870
(99 %)
3 diff
(99.7 %id)
BM455394 lymph, lymphoma, cell line .e 1354 to 2111 11 to 771       761/1080
(70 %)
21 diff
(98.1 %id)
BI830236 brain, medulla .e 1388 to 2112 1 to 725       725/725
(100 %)
0 diff
(100 %id)
BI832367 brain, medulla .e 1388 to 2141 27 to 779       753/779
(96 %)
6 diff
(99.3 %id)
TI_57170982   .e 1388 to 2112 30 to 754       725/754
(96 %)
6 diff
(99.3 %id)
TI_57170985   .e 1388 to 2141 27 to 779       753/779
(96 %)
6 diff
(99.3 %id)
AW371123 breast .e 1394 to 1850 474 to 20       455/474
(95 %)
1 diff
(99.8 %id)
T25373   .e 1422 to 1635 1 to 214       214/220
(97 %)
1 diff
(99.6 %id)
BF131984 hypernephroma, Kidney .e 1422 to 2016 1 to 594       594/808
(73 %)
5 diff
(99.4 %id)
CA397837 eye, RPE/choroid .e 1445 to 2001 1 to 557       557/557
(100 %)
1 diff
(99.9 %id)
AA249314   .e 1453 to 1609 1 to 158       158/158
(100 %)
2 diff
(98.8 %id)
H71760 liver and spleen .e 1472 to 1854 1 to 391       391/393
(99 %)
15 diff
(96.2 %id)
H78175 liver and spleen .e 1472 to 1863 1 to 399       399/451
(88 %)
17 diff
(96.3 %id)
AW327924 Burkitt lymphoma, lymph .e 1491 to 2165 1 to 680       680/680
(100 %)
6 diff
(99.2 %id)
BE175157 head_neck .e 1533 to 1837 313 to 10     Submitted on the opposite strand 304/330
(92 %)
0 diff
(100 %id)
BX437561.
matches multiple genes
thymus .e 1538 to 2388 1 to 850     also hits gene TLE4 850/850
(100 %)
2 diff
(99.8 %id)
AW604441 colon .e 1547 to 2093 14 to 557       544/557
(97 %)
6 diff
(99.0 %id)
BG925776 cartilage .e 1553 to 1869 69 to 385       317/334
(94 %)
6 diff
(98.3 %id)
BG164904 hypernephroma, cell line, Kidney .e 1558 to 2306 1 to 742       742/936
(79 %)
12 diff
(98.8 %id)
BP425986 small intestine .e 1576 to 1770 10 to 205     Submitted on the opposite strand 196/205
(95 %)
6 diff
(97.1 %id)
CR735840 ovarian tumor, ovary .e 1580 to 2191 1 to 611       611/615
(99 %)
2 diff
(99.7 %id)
CA312333 Human Lung Epithelial cells, lung .e 1649 to 2308 665 to 6   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 660/667
(98 %)
0 diff
(100 %id)
BM728999 eye, fetal eye .e 1675 to 2026 44 to 394   fully sequenced, Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 351/394
(89 %)
5 diff
(98.8 %id)
BF089162 head_neck .e 1678 to 2105 16 to 443       428/446
(95 %)
13 diff
(97.1 %id)
N40588 placenta .e 1688 to 1910 1 to 223       223/226
(98 %)
3 diff
(98.7 %id)
FN161885 breast carcinoma .e 1695 to 1785 1 to 91       91/91
(100 %)
0 diff
(100 %id)
BF850229 lung_normal .e 1715 to 2075 1 to 360       360/360
(100 %)
6 diff
(98.4 %id)
BF850406 lung_normal .e 1721 to 2162 1 to 441       441/441
(100 %)
4 diff
(99.1 %id)
BX387796 Placenta Cot 25-normalized .e 1797 to 2660 864 to 1       864/867
(99 %)
11 diff
(98.8 %id)
BQ430669 large cell carcinoma, lung .e 1798 to 2653 1 to 860       860/871
(98 %)
10 diff
(98.9 %id)
BX090586 lung .e 1801 to 2541 1 to 744       744/744
(100 %)
3 diff
(99.6 %id)
AL553405 placenta, Placenta Cot 25-normalized .e 1829 to 2704 1 to 875       875/875
(100 %)
2 diff
(99.8 %id)
W19652 lung .e 1845 to 2180 1 to 334       334/337
(99 %)
2 diff
(99.5 %id)
FN092162 breast carcinoma .e 1896 to 1999 1 to 104       104/104
(100 %)
0 diff
(100 %id)
AW795404 uterus .e 1909 to 2603 1 to 693       693/693
(100 %)
16 diff
(97.7 %id)
BP334687 salivary gland .e 1971 to 2546 1 to 577       577/582
(99 %)
2 diff
(99.7 %id)
BM681945 eye, fetal eye .e 1996 to 2698 715 to 14   tiling clone, fully sequenced, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 702/702
(100 %)
2 diff
(99.8 %id)
DB509611 testis .e 2008 to 2332 1 to 323     Submitted on the opposite strand 323/323
(100 %)
15 diff
(95.4 %id)
AA005120 liver and spleen .e 2025 to 2656 1 to 634       634/635
(99 %)
12 diff
(98.2 %id)
TI_149309911   .e 2067 to 2919 941 to 91   AAA   851/970
(87 %)
9 diff
(99.1 %id)
CV411828 colon_normal .e 2099 to 2564 476 to 1     Submitted on the opposite strand 476/476
(100 %)
23 diff
(95.2 %id)
AW601690 breast .e 2102 to 2448 354 to 4       351/354
(99 %)
0 diff
(100 %id)
BX360572 Placenta Cot 25-normalized .e 2103 to 2670 580 to 1       580/899
(64 %)
28 diff
(96.9 %id)
DB363201   .e 2117 to 2693 578 to 1       578/578
(100 %)
6 diff
(99.0 %id)
AV757820 bone marrow .e 2172 to 2801 69 to 699       631/862
(73 %)
7 diff
(99.2 %id)
BM987562 mixed .e 2175 to 2693 537 to 19   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 519/519
(100 %)
0 diff
(100 %id)
BU688269 lung .e 2181 to 2919 755 to 17   AAA   739/739
(100 %)
2 diff
(99.8 %id)
CA309003 Alveolar Macrophage, lung .e 2196 to 2923 745 to 19   AAA   727/727
(100 %)
2 diff
(99.8 %id)
AI378627 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 2200 to 2693 494 to 1       494/494
(100 %)
0 diff
(100 %id)
N22271 cochlea, ear .e 2264 to 2699 439 to 1       439/439
(100 %)
3 diff
(99.4 %id)
AW026460 brain, glioblastoma (pooled) .e 2267 to 2716 452 to 1       452/452
(100 %)
4 diff
(99.2 %id)
DB508771 testis .e 2279 to 2698 1 to 420     Submitted on the opposite strand 420/420
(100 %)
0 diff
(100 %id)
BG178137 adenocarcinoma, cell line, Prostate .e 2281 to 2913 1 to 634       634/1053
(60 %)
4 diff
(99.7 %id)
BF382395 brain, primitive neuroectoderm .e 2287 to 2899 1 to 608       608/842
(72 %)
7 diff
(99.2 %id)
BI015645 lung_tumor .e 2289 to 2543 12 to 265       254/265
(95 %)
6 diff
(97.8 %id)
AI222832 adenocarcinoma, colon .e 2295 to 2698 417 to 14   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 404/404
(100 %)
1 diff
(99.8 %id)
AA946686 germinal center B cell .e 2311 to 2478 168 to 1       168/168
(100 %)
0 diff
(100 %id)
CA418826 Chondrosarcoma Grade II, Left Pelvis .e 2361 to 2919 577 to 19   AAA   559/559
(100 %)
0 diff
(100 %id)
BF357951 leiomios .e 2363 to 2804 445 to 5       441/445
(99 %)
0 diff
(100 %id)
FN069494 breast carcinoma .e 2366 to 2471 1 to 106       106/107
(99 %)
2 diff
(98.2 %id)
DV461095 cochlea, ear .e 2371 to 2584 1 to 214       214/214
(100 %)
2 diff
(99.1 %id)
BF062671 colon, colon tumor, RER+ .e 2378 to 2925 552 to 5       548/552
(99 %)
0 diff
(100 %id)
BU753005 placenta .e 2400 to 2919 537 to 18   AAA   520/526
(98 %)
1 diff
(99.9 %id)
AI092893 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 2412 to 2923 512 to 1       512/512
(100 %)
0 diff
(100 %id)
DB521838 testis .e 2429 to 2919 1 to 491     Submitted on the opposite strand 491/491
(100 %)
0 diff
(100 %id)
BG567820 Liver .e 2441 to 2916 1 to 475   AAA   475/475
(100 %)
2 diff
(99.6 %id)
AA493394 colon .e 2446 to 2919 474 to 1       474/474
(100 %)
0 diff
(100 %id)
N67459 cochlea, ear .e 2461 to 2925 468 to 2       467/468
(99 %)
0 diff
(100 %id)
N25882 placenta .e 2469 to 2920 457 to 1       457/459
(99 %)
15 diff
(96.8 %id)
AA427588 ovarian tumor, ovary .e 2472 to 2919 447 to 1       447/447
(100 %)
1 diff
(99.8 %id)
AA584320 colon, colon tumor RER+ .e 2473 to 2923 461 to 11   AAA   451/451
(100 %)
2 diff
(99.6 %id)
AI337815 lung .e 2473 to 2924 452 to 1       452/452
(100 %)
0 diff
(100 %id)
AA627365 breast .e 2485 to 2920 439 to 4       436/439
(99 %)
0 diff
(100 %id)
AI090552 heart .e 2491 to 2923 433 to 1       433/433
(100 %)
0 diff
(100 %id)
AI275182 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .e 2492 to 2693 202 to 1       202/202
(100 %)
0 diff
(100 %id)
AW057681 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .e 2492 to 2920 430 to 2       429/430
(99 %)
0 diff
(100 %id)
BM153255 leukopheresis .e 2503 to 2919 433 to 17   AAA   417/417
(100 %)
5 diff
(98.9 %id)
AW008380 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .e 2504 to 2698 195 to 1       195/195
(100 %)
0 diff
(100 %id)
AA033823 heart .e 2510 to 2885 379 to 1       379/379
(100 %)
5 diff
(98.7 %id)
AI261251 adenocarcinoma, colon .e 2518 to 2919 402 to 1       402/402
(100 %)
0 diff
(100 %id)
AI491792 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .e 2520 to 2923 404 to 1       404/406
(99 %)
0 diff
(100 %id)
AI610798 serous papillary carcinoma, high grade, 2pooled tumors, uterus .e 2520 to 2925 407 to 1       407/407
(100 %)
1 diff
(99.8 %id)
AI701924 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .e 2527 to 2924 398 to 1       398/398
(100 %)
0 diff
(100 %id)
AI264489 adenocarcinoma, colon .e 2529 to 2919 390 to 1       390/390
(100 %)
2 diff
(99.5 %id)
AW470708 2 pooled tumors (clear cell type), Kidney .e 2531 to 2925 398 to 4       395/398
(99 %)
0 diff
(100 %id)
AA626301 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 2569 to 2923 355 to 1       355/355
(100 %)
0 diff
(100 %id)
CA944694 Human Lung Epithelial cells, lung .e 2569 to 2903 4 to 339     Submitted on the opposite strand 336/348
(96 %)
7 diff
(98.0 %id)
AW327883 Burkitt lymphoma, lymph .e 2581 to 2919 368 to 30   AAA   339/339
(100 %)
0 diff
(100 %id)
AA356965   .e 2583 to 2910 327 to 1     Submitted on the opposite strand 327/336
(97 %)
6 diff
(98.3 %id)
AA593678 breast .e 2584 to 2898 1 to 316     Submitted on the opposite strand 316/316
(100 %)
1 diff
(99.7 %id)
H60028 liver and spleen .e 2596 to 2917 339 to 1       339/354
(95 %)
20 diff
(94.4 %id)
H78176 liver and spleen .e 2623 to 2899 280 to 1       280/284
(98 %)
3 diff
(99.0 %id)
AA732694 germinal center B cell .e 2636 to 2714 89 to 11   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 79/80
(98 %)
0 diff
(100 %id)
H72323 liver and spleen .e 2681 to 2920 246 to 7       240/246
(97 %)
0 diff
(100 %id)
N71260 liver and spleen .e 2707 to 2919 213 to 1       213/213
(100 %)
0 diff
(100 %id)
N79036 lung .e 2749 to 2923 175 to 1       175/175
(100 %)
0 diff
(100 %id)
EC486226 Prostate .e 2812 to 2926 118 to 2       117/118
(99 %)
0 diff
(100 %id)
EC486713 Prostate .e 2816 to 2922 109 to 3       107/109
(98 %)
0 diff
(100 %id)
AK026831 Human lung .f 1 to 1823 1 to 1824 Q68R S69A S70V E71K S72V ... tiling clone, available from FLJ, AAA   1824/1824
(100 %)
7 diff
(99.7 %id)
BP293132 lung .f 1 to 582 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
BP293461 lung .f 1 to 581 1 to 581   tiling clone,   581/581
(100 %)
1 diff
(99.9 %id)
BP293682 lung .f 1 to 582 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
BP221999   .g 1 to 583 1 to 582   tiling clone,   582/582
(100 %)
2 diff
(99.7 %id)
CX751245 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .g 38 to 805 1 to 757   tiling clone, Submitted on the opposite strand 757/833
(90 %)
8 diff
(99.1 %id)
CX763228 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .g 123 to 833 1 to 711     Submitted on the opposite strand 711/711
(100 %)
0 diff
(100 %id)
BG221208   .g 332 to 1112 1 to 779 G139R R145G N163H N178T K179R ... tiling clone,   779/783
(99 %)
9 diff
(98.9 %id)
DB131554 thymus .h 1 to 559 2 to 560 exact tiling clone, capped   559/559
(100 %)
0 diff
(100 %id)
DA860342 placenta .i 1 to 566 2 to 567 exact tiling clone, capped   566/566
(100 %)
0 diff
(100 %id)
BY995750   .j 1 to 704 7 to 710   tiling clone,   704/710
(99 %)
0 diff
(100 %id)
CX871359 embryonic stem .j 100 to 904 1 to 805 K103X tiling clone,   805/805
(100 %)
0 diff
(100 %id)
DC398439 testis .j 169 to 739 1 to 574       574/574
(100 %)
5 diff
(99.2 %id)
DC395670 testis .j 184 to 712 1 to 530       530/530
(100 %)
4 diff
(99.3 %id)
AK307318 testis .j 186 to 1095 1 to 910 exact tiling clone,   910/910
(100 %)
2 diff
(99.8 %id)
DC396675 testis .j 186 to 744 1 to 559       559/559
(100 %)
0 diff
(100 %id)
DC398417 testis .j 186 to 743 1 to 558       558/558
(100 %)
0 diff
(100 %id)
DC399437 testis .j 186 to 696 1 to 512       512/513
(99 %)
2 diff
(99.7 %id)
DC399580 testis .j 186 to 732 1 to 547       547/547
(100 %)
0 diff
(100 %id)
DC399824 testis .j 186 to 732 1 to 547       547/547
(100 %)
0 diff
(100 %id)
BG435044 placenta .k 1 to 521 1 to 523   tiling clone,   523/523
(100 %)
4 diff
(99.3 %id)
DB147154.
matches multiple genes
thymus .k 45 to 620 2 to 577   tiling clone, capped also hits gene PAK2 576/576
(100 %)
0 diff
(100 %id)
DN920816   .k 473 to 913 1 to 442       442/442
(100 %)
4 diff
(99.1 %id)
DA527579 brain .k 528 to 1101 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA495969 brain .k 560 to 1115 2 to 557   tiling clone, capped   556/556
(100 %)
0 diff
(100 %id)
DN920815   .k 749 to 1199 451 to 1       451/451
(100 %)
6 diff
(98.7 %id)
DB111557 thymus .k 1046 to 1614 2 to 570 exact tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
BE465140 carcinoid, lung .l 1 to 464 464 to 1   tiling clone,   464/464
(100 %)
4 diff
(99.2 %id)
DA093790 cerebellum .l 175 to 755 2 to 582 exact tiling clone, capped   581/581
(100 %)
0 diff
(100 %id)
BF909465 uterus_tumor .m-u 1 to 290 1 to 290 V3X tiling clone,   290/302
(96 %)
2 diff
(99.4 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI