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Gene ZCCHC3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
289 supporting clones for gene ZCCHC3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC020460 Kidney, hypernephroma .a-u 1 to 669 10 to 678   tiling clone, available from MGC,   669/669
(100 %)
4 diff
(99.5 %id)
BG165433 hypernephroma, cell line, Kidney .a-u 2 to 590 22 to 610   available from MGC,   589/682
(86 %)
28 diff
(95.9 %id)
AA928891 carcinoid, lung .a-u 126 to 413 1 to 285     Submitted on the opposite strand 285/285
(100 %)
9 diff
(96.9 %id)
BU536724 mixed (pool of 40 RNAs) .a-u 126 to 316 193 to 3     Submitted on the opposite strand 191/220
(86 %)
0 diff
(100 %id)
BI024231 marrow .a-u 130 to 379 255 to 9   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 247/269
(91 %)
0 diff
(100 %id)
BI024233 marrow .a-u 130 to 381 248 to 1       248/262
(94 %)
5 diff
(98.1 %id)
AI521452 ovary, tumor, 5 pooled (see description) .a-u 163 to 661 500 to 1       500/553
(90 %)
11 diff
(98.1 %id)
AI337349 colon, colon tumor, RER+ .a-u 170 to 649 479 to 1       479/479
(100 %)
1 diff
(99.8 %id)
AI689759 carcinoid, lung .a-u 184 to 649 466 to 1   tiling clone,   466/466
(100 %)
1 diff
(99.8 %id)
AI694812 carcinoid, lung .a-u 264 to 649 386 to 1       386/386
(100 %)
0 diff
(100 %id)
AI793055 Kidney .a-u 313 to 516 1 to 204       204/204
(100 %)
0 diff
(100 %id)
AI263213 Kidney .a-u 321 to 649 331 to 1       331/434
(76 %)
6 diff
(98.7 %id)
AI263204 Kidney .a-u 322 to 649 328 to 1       328/421
(77 %)
4 diff
(99.1 %id)
AI793231 Kidney .a-u 346 to 649 304 to 1       304/304
(100 %)
0 diff
(100 %id)
AI793229 Kidney .a-u 346 to 649 303 to 1       303/303
(100 %)
4 diff
(98.7 %id)
BF224250 carcinoid, lung .a-u 359 to 642 284 to 1       284/284
(100 %)
1 diff
(99.7 %id)
AI216144 carcinoid, lung .a-u 422 to 649 228 to 1       228/228
(100 %)
0 diff
(100 %id)
BC069238 Liver, hepatocellular carcinoma .a-u 597 to 3354 1 to 2755 A159G G160P P161G G162K K163G ... tiling clone, available from MGC, AAA   2755/2755
(100 %)
2 diff
(100.0 %id)
NM_033089.6   .a-u 597 to 3354 1 to 2755 A159G G160P P161G G162K K163G ... RefSeq, AAA   2755/2755
(100 %)
1 diff
(100.0 %id)
BQ948538 epidermoid carcinoma, cell line, lung .a-u 600 to 1167 1 to 571       571/1049
(54 %)
6 diff
(99.5 %id)
BP241022 Liver .a-u 601 to 1182 1 to 579       579/579
(100 %)
4 diff
(99.4 %id)
DB456997 testis .a-u 604 to 1093 1 to 490   tiling clone,   490/494
(99 %)
3 diff
(99.4 %id)
BI549411 brain, hippocampus .a-u 604 to 1314 1 to 710   available from MGC,   710/715
(99 %)
14 diff
(98.1 %id)
CB992898 placenta, pre-eclamptic placenta .a-u 604 to 1141 28 to 568       541/898
(60 %)
31 diff
(96.6 %id)
CB997967 placenta, pre-eclamptic placenta .a-u 604 to 1251 28 to 681       654/860
(76 %)
15 diff
(98.3 %id)
BM150122 leukopheresis .a-u 606 to 797 1 to 193       193/226
(85 %)
6 diff
(97.4 %id)
DB485067 hypothalamus .a-u 607 to 918 1 to 309       309/309
(100 %)
13 diff
(95.8 %id)
DB504809 hypothalamus .a-u 607 to 1084 1 to 477       477/477
(100 %)
8 diff
(98.4 %id)
TI_44167542   .a-u 607 to 1314 85 to 791       707/796
(88 %)
12 diff
(98.5 %id)
DB483467 hippocampus .a-u 609 to 1063 1 to 455       455/455
(100 %)
1 diff
(99.8 %id)
DN993718 brain, whole brain .a-u 610 to 1233 8 to 628       621/628
(98 %)
6 diff
(99.1 %id)
BC036469 Brain, hippocampus .a-u 612 to 3354 4 to 2743 A159G G160P P161G G162K K163G ... available from MGC, AAA   2740/2740
(100 %)
5 diff
(99.9 %id)
CN352624 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a-u 614 to 862 1 to 249       249/249
(100 %)
1 diff
(99.6 %id)
DB494749 hypothalamus .a-u 965 to 1463 1 to 495       495/495
(100 %)
5 diff
(99.0 %id)
TI_158434462   .a-u 1008 to 1558 78 to 628     Submitted on the opposite strand 551/665
(82 %)
24 diff
(96.4 %id)
AW137767   .a-u 1009 to 1414 1 to 403     Submitted on the opposite strand 403/403
(100 %)
4 diff
(99.1 %id)
AW137768   .a-u 1009 to 1414 1 to 403     Submitted on the opposite strand 403/403
(100 %)
4 diff
(99.1 %id)
CB054473 brain, glioblastoma (pooled) .a-u 1016 to 1608 1 to 590     Submitted on the opposite strand 590/590
(100 %)
2 diff
(99.7 %id)
AI628493 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a-u 1024 to 1505 1 to 479     Submitted on the opposite strand 479/479
(100 %)
1 diff
(99.8 %id)
AW628821 pooled .a-u 1026 to 1451 1 to 427     Submitted on the opposite strand 427/427
(100 %)
7 diff
(98.4 %id)
AI805903 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a-u 1039 to 1404 1 to 363     Submitted on the opposite strand 363/363
(100 %)
2 diff
(99.5 %id)
AI678180 Prostate .a-u 1039 to 1386 1 to 345     Submitted on the opposite strand 345/345
(100 %)
6 diff
(98.3 %id)
AI333209 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a-u 1041 to 1543 1 to 500     Submitted on the opposite strand 500/500
(100 %)
3 diff
(99.4 %id)
AI333653 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a-u 1041 to 1546 1 to 503     Submitted on the opposite strand 503/503
(100 %)
1 diff
(99.9 %id)
BQ786800 Pancreas, Purified pancreatic islet .a-u 1042 to 1519 1 to 474     Submitted on the opposite strand 474/474
(100 %)
2 diff
(99.6 %id)
AI475703 B-cell, chronic lymphotic leukemia .a-u 1043 to 1506 1 to 464   tiling clone, Submitted on the opposite strand 464/464
(100 %)
1 diff
(99.8 %id)
AI401443 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a-u 1043 to 1400 1 to 355     Submitted on the opposite strand 355/355
(100 %)
5 diff
(98.6 %id)
AW237630 Kidney .a-u 1045 to 1461 1 to 414     Submitted on the opposite strand 414/414
(100 %)
2 diff
(99.6 %id)
AW592805 pooled .a-u 1049 to 1327 1 to 276     Submitted on the opposite strand 276/276
(100 %)
1 diff
(99.7 %id)
AI352007 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a-u 1054 to 1398 1 to 344     Submitted on the opposite strand 344/344
(100 %)
9 diff
(97.4 %id)
AW611648 Kidney .a-u 1055 to 1223 1 to 167     Submitted on the opposite strand 167/167
(100 %)
2 diff
(98.9 %id)
BE855572 brain, glioblastoma (pooled) .a-u 1063 to 1573 1 to 508     Submitted on the opposite strand 508/508
(100 %)
2 diff
(99.7 %id)
DA615294   .a-u 1069 to 1650 2 to 582   capped   581/581
(100 %)
3 diff
(99.5 %id)
AI913211 Kidney .a-u 1084 to 1504 42 to 459     Submitted on the opposite strand 418/459
(91 %)
6 diff
(98.7 %id)
AA833781 germinal center B cell .a-u 1085 to 1409 1 to 323       323/323
(100 %)
12 diff
(96.3 %id)
CN352622 embryonic stem cells, cell lines H1, H7, andH9 .a-u 1120 to 1809 1 to 689       689/689
(100 %)
4 diff
(99.5 %id)
BI055639 placenta_normal .a-u 1153 to 1539 410 to 30       381/410
(92 %)
0 diff
(100 %id)
AI025618 parathyroid gland, parathyroid tumor .a-u 1168 to 1451 1 to 282     Submitted on the opposite strand 282/282
(100 %)
6 diff
(97.9 %id)
AA334853   .a-u 1211 to 1518 1 to 307       307/307
(100 %)
2 diff
(99.4 %id)
BF306944 muscle, rhabdomyosarcoma .a-u 1329 to 2082 1 to 747       747/974
(76 %)
27 diff
(97.3 %id)
BF204957 muscle, rhabdomyosarcoma .a-u 1330 to 2087 1 to 748       748/762
(98 %)
24 diff
(96.9 %id)
CV812238 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a-u 1335 to 2112 1 to 790       790/892
(88 %)
25 diff
(97.2 %id)
BE299078 muscle, rhabdomyosarcoma .a-u 1350 to 2021 1 to 670       670/710
(94 %)
14 diff
(98.1 %id)
BG469284 adenocarcinoma cell line, colon .a-u 1355 to 2069 1 to 715       715/715
(100 %)
8 diff
(98.9 %id)
AK025768   .b 1 to 2040 1 to 2040 exact tiling clone, available from FLJ, AAA   2040/2040
(100 %)
3 diff
(99.9 %id)
BP243035 Liver .b 1 to 581 1 to 581 V51L     581/581
(100 %)
3 diff
(99.5 %id)
DB187049 liver, tumor tissue .b 85 to 652 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
BG026276 Bone, osteosarcoma, cell line .b 88 to 773 1 to 689       689/1034
(66 %)
5 diff
(99.6 %id)
BQ072364 pooled lung and spleen .b 104 to 939 18 to 858       841/1100
(76 %)
23 diff
(98.0 %id)
BX644840   .b 107 to 814 9 to 715       707/715
(98 %)
6 diff
(99.2 %id)
CN352620 embryonic stem cells, DMSO-treated H9 cellline .b 137 to 348 1 to 212       212/212
(100 %)
0 diff
(100 %id)
BG115109 duodenal adenocarcinoma, cell line, small intestine .b 143 to 819 1 to 660   AAA   660/855
(77 %)
18 diff
(97.9 %id)
BP374666 umbilical cord .b 161 to 742 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BX478106   .b 218 to 745 1 to 528       528/528
(100 %)
2 diff
(99.7 %id)
CK902335 Pancreas, Purified pancreatic islet .b 226 to 806 581 to 1   tiling clone,   581/581
(100 %)
0 diff
(100 %id)
BM924034 pooled colon, kidney, stomach .b 243 to 1211 1 to 983       983/1007
(97 %)
33 diff
(96.8 %id)
BQ787068 Pancreas, Purified pancreatic islet .b 272 to 846 577 to 3     Submitted on the opposite strand 575/577
(99 %)
0 diff
(100 %id)
BM693876 eye, lens .b 277 to 723 1 to 447       447/447
(100 %)
0 diff
(100 %id)
BM905572 embryonal carcinoma, cell line, testis .b 278 to 773 25 to 521       497/1118
(44 %)
21 diff
(98.2 %id)
AA377564 synovial membrane .b 281 to 629 1 to 349       349/350
(99 %)
10 diff
(97.2 %id)
AA143344 colon, tumor .b 291 to 833 1 to 535       535/536
(99 %)
21 diff
(96.1 %id)
TI_57146271   .b 303 to 834 59 to 590       532/970
(54 %)
10 diff
(99.0 %id)
BI759293 pooled colon, kidney, stomach .b 311 to 834 1 to 524       524/904
(57 %)
6 diff
(99.4 %id)
CB215537 normal endometrium, late proliferativephase, cycle day 13, uterus .b 328 to 951 1 to 624       624/624
(100 %)
1 diff
(99.9 %id)
CR999652 T-Lymphocytes .b 330 to 883 1 to 549       549/551
(99 %)
14 diff
(97.5 %id)
BF793393 adrenal cortex carcinoma, cell line, adrenal gland .b 343 to 847 1 to 506       506/833
(60 %)
8 diff
(99.1 %id)
BU176328 eye, retinoblastoma .b 359 to 1223 13 to 886   AAA   874/901
(97 %)
6 diff
(99.4 %id)
CR596693 Placenta Cot 25-normalized .b 397 to 2011 1 to 1615   tiling clone,   1615/1615
(100 %)
0 diff
(100 %id)
AL547450 placenta, Placenta Cot 25-normalized .b 397 to 1359 1 to 955   fully sequenced,   955/955
(100 %)
9 diff
(99.1 %id)
AA347068 heart .b 407 to 601 1 to 199       199/204
(97 %)
5 diff
(97.6 %id)
AW953068   .b 407 to 960 1 to 556       556/559
(99 %)
16 diff
(97.2 %id)
H28185 brain .b 413 to 768 8 to 368     Submitted on the opposite strand 361/370
(97 %)
11 diff
(97.1 %id)
BQ648376 hepatocellular carcinoma, cell line, Liver .b 426 to 1296 26 to 912       887/977
(90 %)
37 diff
(96.3 %id)
CX757138 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 430 to 1128 1 to 699     Submitted on the opposite strand 699/699
(100 %)
1 diff
(99.9 %id)
AV656942 corresponding non cancerous liver tissue .b 435 to 761 1 to 327     Submitted on the opposite strand 327/340
(96 %)
2 diff
(99.5 %id)
AV656954 corresponding non cancerous liver tissue .b 435 to 760 1 to 326     Submitted on the opposite strand 326/340
(95 %)
22 diff
(93.6 %id)
CN389007 embryonic stem cells, DMSO-treated H9 cellline .b 560 to 910 1 to 353       353/356
(99 %)
4 diff
(98.9 %id)
CR743016 heart .b 565 to 1324 1 to 759       759/759
(100 %)
3 diff
(99.7 %id)
CN389006 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 566 to 1017 1 to 451       451/451
(100 %)
6 diff
(98.7 %id)
BQ069468 brain, neuroblastoma, cell line .b 585 to 1430 1 to 859       859/1082
(79 %)
26 diff
(97.6 %id)
BG286850 bladder, transitional cell papilloma, cell line .b 595 to 1249 1 to 656       656/1058
(62 %)
20 diff
(98.2 %id)
W76141 heart .b 602 to 1047 1 to 448       448/448
(100 %)
6 diff
(98.7 %id)
BG015158 placenta_normal .b 608 to 741 139 to 1       139/159
(87 %)
8 diff
(95.0 %id)
BQ707463 Spleen .b 637 to 1338 18 to 731       714/992
(71 %)
25 diff
(97.5 %id)
W21263 lung .b 688 to 903 1 to 218       218/218
(100 %)
5 diff
(97.8 %id)
CN389005 embryonic stem cells, DMSO-treated H9 cellline .b 701 to 1056 1 to 356       356/356
(100 %)
2 diff
(99.5 %id)
BG257523 embryonal carcinoma, cell line, testis .b 730 to 1368 1 to 637       637/637
(100 %)
14 diff
(97.9 %id)
BU618556 Cell Line, Chondrosarcoma .b 764 to 1493 1 to 730     Submitted on the opposite strand 730/730
(100 %)
4 diff
(99.5 %id)
AA405137.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 782 to 1099 1 to 316     also hits gene LOC100128822 316/316
(100 %)
8 diff
(97.5 %id)
AI677906 pooled .b 782 to 1253 1 to 472     Submitted on the opposite strand 472/472
(100 %)
1 diff
(99.8 %id)
R68199 placenta .b 787 to 1154 1 to 378       378/464
(81 %)
12 diff
(97.5 %id)
AW662782 pooled .b 787 to 1236 1 to 450     Submitted on the opposite strand 450/450
(100 %)
1 diff
(99.8 %id)
BX090293 liver and spleen .b 789 to 1597 1 to 811       811/811
(100 %)
2 diff
(99.8 %id)
R99740 liver and spleen .b 815 to 1053 1 to 242       242/242
(100 %)
3 diff
(98.8 %id)
BE837960 prostate_normal .b 843 to 1067 230 to 6       225/236
(95 %)
0 diff
(100 %id)
BG388774 embryonal carcinoma, cell line, testis .b 855 to 1642 1 to 779       779/915
(85 %)
20 diff
(97.9 %id)
AA461298   .b 878 to 1163 1 to 287     Submitted on the opposite strand 287/287
(100 %)
1 diff
(99.7 %id)
BE930872 placenta_normal .b 879 to 1297 428 to 12       417/439
(94 %)
0 diff
(100 %id)
W79801 heart .b 889 to 1274 1 to 387       387/387
(100 %)
6 diff
(98.5 %id)
W67630 heart .b 890 to 1338 1 to 448       448/449
(99 %)
5 diff
(98.9 %id)
BG770163 melanotic melanoma, high MDR (cell line), skin .b 891 to 1538 1 to 647       647/648
(99 %)
3 diff
(99.6 %id)
BU178334 melanotic melanoma, skin .b 897 to 1773 1 to 893       893/908
(98 %)
28 diff
(97.0 %id)
AW028725 fibrotheoma, ovary .b 906 to 1364 1 to 459     Submitted on the opposite strand 459/459
(100 %)
0 diff
(100 %id)
W46495 senescent fibroblast .b 913 to 1153 1 to 240       240/240
(100 %)
3 diff
(98.8 %id)
BX089974 liver and spleen .b 926 to 1674 1 to 749       749/751
(99 %)
2 diff
(99.8 %id)
BG742180 skin .b 933 to 1599 1 to 666       666/666
(100 %)
3 diff
(99.6 %id)
BQ233198 epithelioid carcinoma, Pancreas .b 941 to 1726 1 to 792       792/907
(87 %)
8 diff
(99.2 %id)
N55953   .b 941 to 1335 1 to 389       389/389
(100 %)
15 diff
(96.2 %id)
AA284030 germinal center B cell .b 961 to 1246 1 to 285       285/290
(98 %)
3 diff
(99.0 %id)
W85923 liver and spleen .b 1012 to 1372 1 to 368       368/369
(99 %)
14 diff
(96.3 %id)
W86333 liver and spleen .b 1036 to 1472 1 to 439       439/445
(98 %)
8 diff
(98.3 %id)
BG675672 skin, squamous cell carcinoma .b 1036 to 1816 1 to 774       774/777
(99 %)
11 diff
(98.6 %id)
BM795074 stomach .b 1042 to 1625 1 to 584       584/584
(100 %)
0 diff
(100 %id)
H84522 eye, retina .b 1071 to 1460 1 to 397       397/425
(93 %)
13 diff
(97.0 %id)
H66806 liver and spleen .b 1073 to 1448 10 to 386       377/390
(96 %)
8 diff
(98.0 %id)
W89015 liver and spleen .b 1074 to 1584 1 to 519   fully sequenced,   519/519
(100 %)
14 diff
(97.4 %id)
R67415 placenta .b 1080 to 1338 12 to 276       265/300
(88 %)
12 diff
(96.0 %id)
CB143652 Liver .b 1089 to 1624 1 to 537       537/537
(100 %)
3 diff
(99.5 %id)
AA047745 heart .b 1096 to 1403 1 to 308       308/308
(100 %)
4 diff
(98.8 %id)
BG752166 eye, normal pigmented retinal epithelium .b 1163 to 1956 1 to 791       791/791
(100 %)
10 diff
(98.8 %id)
TI_154033044   .b 1193 to 2040 920 to 77   AAA   844/957
(88 %)
18 diff
(98.2 %id)
BM691581 eye, RPE and Choroid .b 1193 to 1550 24 to 381   fully sequenced,   358/381
(93 %)
5 diff
(98.7 %id)
CN352623 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 1196 to 1870 22 to 696       675/696
(96 %)
6 diff
(99.2 %id)
AA464508 ovarian tumor, ovary .b 1205 to 1554 1 to 350       350/350
(100 %)
0 diff
(100 %id)
CN352619 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 1214 to 1559 1 to 346       346/346
(100 %)
5 diff
(98.6 %id)
BM797621 Ascites, stomach .b 1214 to 1695 1 to 482       482/482
(100 %)
0 diff
(100 %id)
CV810895 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 1227 to 2044 863 to 35     Submitted on the opposite strand 829/896
(92 %)
0 diff
(100 %id)
AA476752.
matches multiple genes
  .b 1237 to 1735 1 to 498     also hits gene DNM1 498/498
(100 %)
1 diff
(99.8 %id)
BM711400 eye, fetal eyes .b 1239 to 1594 11 to 366       356/366
(97 %)
6 diff
(98.4 %id)
DR762287 embryonic stem .b 1268 to 2044 794 to 18     Submitted on the opposite strand 777/794
(97 %)
0 diff
(100 %id)
W24160 senescent fibroblast .b 1277 to 1721 1 to 447       447/447
(100 %)
5 diff
(98.9 %id)
CA443158 lung, Metastatic Chondrosarcoma .b 1277 to 2040 783 to 19   AAA   765/765
(100 %)
2 diff
(99.8 %id)
BG259402 embryonal carcinoma, cell line, testis .b 1286 to 2044 759 to 10     Submitted on the opposite strand 750/819
(91 %)
0 diff
(100 %id)
BQ001894 lung, Metastatic Chondrosarcoma .b 1286 to 2040 772 to 19   AAA   754/754
(100 %)
2 diff
(99.8 %id)
BQ018739 lung, Metastatic Chondrosarcoma .b 1286 to 2040 773 to 19   AAA   755/755
(100 %)
1 diff
(99.9 %id)
BU623058 cell lines, Chondrosarcoma .b 1286 to 2040 772 to 19   AAA   754/754
(100 %)
2 diff
(99.8 %id)
CA443293 lung, Metastatic Chondrosarcoma .b 1303 to 2040 755 to 19   AAA   737/737
(100 %)
1 diff
(99.9 %id)
BP430778   .b 1317 to 1704 1 to 388       388/388
(100 %)
3 diff
(99.3 %id)
CX753628 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 1328 to 2044 720 to 5       716/720
(99 %)
0 diff
(100 %id)
AL572375 placenta, Placenta Cot 25-normalized .b 1329 to 2011 672 to 1   fully sequenced,   672/672
(100 %)
3 diff
(99.6 %id)
BU619366 cell lines, Chondrosarcoma .b 1331 to 2040 728 to 19   AAA   710/710
(100 %)
1 diff
(99.9 %id)
CV800503 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 1338 to 2044 707 to 4     Submitted on the opposite strand 704/833
(84 %)
0 diff
(100 %id)
R21811 placenta .b 1341 to 1722 1 to 399       399/401
(99 %)
24 diff
(94.1 %id)
R67243 placenta .b 1341 to 1753 1 to 421       421/469
(89 %)
19 diff
(96.0 %id)
BQ183264 Knee, Osteoarthritic Cartilage .b 1354 to 2040 705 to 19   AAA   687/687
(100 %)
0 diff
(100 %id)
N77099 liver and spleen .b 1361 to 1464 1 to 104       104/104
(100 %)
1 diff
(99.1 %id)
BM685839 eye, Retina Foveal and Macular .b 1361 to 1722 2 to 362   fully sequenced,   361/362
(99 %)
6 diff
(98.4 %id)
H60135 liver and spleen .b 1363 to 1735 1 to 382   fully sequenced,   382/382
(100 %)
14 diff
(96.4 %id)
H79220 liver and spleen .b 1363 to 1744 1 to 392   fully sequenced,   392/392
(100 %)
8 diff
(98.0 %id)
BE541384 cervix .b 1365 to 2044 710 to 21     Submitted on the opposite strand 690/781
(88 %)
0 diff
(100 %id)
BG011082 placenta_normal .b 1372 to 1788 10 to 426       417/426
(97 %)
6 diff
(98.6 %id)
BM670938 eye, lens .b 1400 to 2040 659 to 19   AAA   641/641
(100 %)
0 diff
(100 %id)
H44227 breast .b 1403 to 1741 1 to 339   fully sequenced,   339/339
(100 %)
4 diff
(98.9 %id)
BU738169 eye, fetal eyes .b 1409 to 2040 650 to 19   AAA   632/632
(100 %)
1 diff
(99.9 %id)
BQ017247 lung, Metastatic Chondrosarcoma .b 1414 to 2040 645 to 19   AAA   627/627
(100 %)
2 diff
(99.7 %id)
AA301479 thymus .b 1423 to 1641 1 to 219       219/219
(100 %)
0 diff
(100 %id)
AA378996 synovial membrane .b 1434 to 1883 1 to 459       459/459
(100 %)
12 diff
(97.4 %id)
AA284435 germinal center B cell .b 1440 to 1866 7 to 432       426/432
(98 %)
6 diff
(98.7 %id)
T48853 placenta .b 1441 to 1797 1 to 355   fully sequenced,   355/355
(100 %)
1 diff
(99.8 %id)
BG034712 breast, mammary adenocarcinoma, cell line .b 1444 to 2041 1 to 596   AAA   596/596
(100 %)
3 diff
(99.5 %id)
AA127867 uterus .b 1446 to 2032 1 to 585   fully sequenced,   585/585
(100 %)
9 diff
(98.5 %id)
CA432472 cell lines, Chondrosarcoma .b 1448 to 2040 611 to 19   AAA   593/593
(100 %)
2 diff
(99.7 %id)
H01405 placenta .b 1456 to 1759 1 to 307   fully sequenced,   307/307
(100 %)
0 diff
(100 %id)
AA143345 colon, tumor .b 1456 to 2039 579 to 1       579/581
(99 %)
10 diff
(98.3 %id)
AA031613 uterus .b 1458 to 1695 1 to 240   fully sequenced,   240/240
(100 %)
0 diff
(100 %id)
D11834 Liver .b 1462 to 1910 1 to 452     Submitted on the opposite strand 452/590
(76 %)
5 diff
(99.2 %id)
AA570389 Schwannoma tumor .b 1463 to 2039 576 to 1       576/576
(100 %)
1 diff
(99.9 %id)
AA033672 uterus .b 1473 to 1634 1 to 165   fully sequenced,   165/165
(100 %)
0 diff
(100 %id)
AA127770 uterus .b 1473 to 1702 1 to 229   fully sequenced,   229/229
(100 %)
0 diff
(100 %id)
AA127778 uterus .b 1473 to 1668 1 to 189   fully sequenced,   189/189
(100 %)
0 diff
(100 %id)
CB068971 Pancreas, Purified pancreatic islet .b 1486 to 1744 1 to 260   fully sequenced,   260/260
(100 %)
3 diff
(98.9 %id)
CN352625 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 1494 to 2044 551 to 2     Submitted on the opposite strand 550/551
(99 %)
8 diff
(98.6 %id)
AA628408   .b 1500 to 2044 546 to 1       546/546
(100 %)
4 diff
(99.3 %id)
AA089911   .b 1506 to 1731 1 to 229       229/229
(100 %)
10 diff
(95.7 %id)
AI885041 anaplastic oligodendroglioma, brain .b 1511 to 2040 540 to 11   AAA   530/530
(100 %)
0 diff
(100 %id)
TI_149282563   .b 1511 to 2040 609 to 79   AAA   531/723
(73 %)
4 diff
(99.5 %id)
TI_149304494   .b 1511 to 2040 614 to 84   AAA   531/950
(55 %)
3 diff
(99.7 %id)
BU679869 lung, Primary Lung Epithelial Cells .b 1511 to 2040 549 to 19   AAA   531/535
(99 %)
4 diff
(99.3 %id)
BU685397 lung, Primary Lung Epithelial Cells .b 1511 to 2040 549 to 19   AAA   531/535
(99 %)
3 diff
(99.5 %id)
AA775796 whole brain .b 1512 to 2044 534 to 3       532/534
(99 %)
0 diff
(100 %id)
BM694242 eye, RPE and Choroid .b 1517 to 2040 1 to 524   fully sequenced, AAA   524/524
(100 %)
0 diff
(100 %id)
BM662225 eye, RPE and Choroid .b 1520 to 2040 538 to 18   fully sequenced, AAA   521/521
(100 %)
2 diff
(99.7 %id)
AA776727   .b 1532 to 2043 510 to 1       510/510
(100 %)
2 diff
(99.7 %id)
AA917093 pooled .b 1533 to 2044 510 to 1       510/510
(100 %)
2 diff
(99.7 %id)
BP396594 pancreatic islet .b 1536 to 2039 1 to 504     Submitted on the opposite strand 504/504
(100 %)
2 diff
(99.7 %id)
AW268482 pooled .b 1536 to 2044 510 to 2       509/510
(99 %)
0 diff
(100 %id)
BP398007 pancreatic islet .b 1548 to 2040 1 to 493     Submitted on the opposite strand 493/493
(100 %)
0 diff
(100 %id)
AW083266 colon, moderately differentiated adenocarcinoma .b 1549 to 2040 492 to 1       492/492
(100 %)
0 diff
(100 %id)
BP396392 pancreatic islet .b 1551 to 2044 1 to 494     Submitted on the opposite strand 494/494
(100 %)
0 diff
(100 %id)
W89016 liver and spleen .b 1554 to 2040 492 to 1   fully sequenced,   492/492
(100 %)
8 diff
(98.4 %id)
CB267866 adipose .b 1559 to 2010 1 to 451       451/451
(100 %)
1 diff
(99.8 %id)
W86289 liver and spleen .b 1563 to 2040 482 to 1       482/482
(100 %)
7 diff
(98.6 %id)
D53212   .b 1564 to 1920 1 to 357       357/357
(100 %)
0 diff
(100 %id)
D53307   .b 1564 to 1938 1 to 379       379/379
(100 %)
7 diff
(98.2 %id)
AA824233   .b 1566 to 2044 476 to 1       476/477
(99 %)
5 diff
(99.0 %id)
BP396945 pancreatic islet .b 1569 to 2044 1 to 477     Submitted on the opposite strand 477/480
(99 %)
5 diff
(99.0 %id)
FN078109 breast carcinoma .b 1570 to 1653 1 to 88       88/88
(100 %)
4 diff
(95.5 %id)
DB522435 testis .b 1572 to 2039 1 to 468     Submitted on the opposite strand 468/469
(99 %)
4 diff
(99.2 %id)
AI091872 heart .b 1572 to 2041 470 to 1       470/470
(100 %)
0 diff
(100 %id)
AW269441 pooled .b 1572 to 2040 482 to 14   AAA   469/469
(100 %)
5 diff
(99.0 %id)
BE677469 dorsal root ganglia .b 1572 to 2041 470 to 1       470/470
(100 %)
0 diff
(100 %id)
AI130939 heart .b 1573 to 2044 473 to 2       472/473
(99 %)
0 diff
(100 %id)
DB565797 hypothalamus .b 1577 to 2039 1 to 463     Submitted on the opposite strand 463/464
(99 %)
2 diff
(99.6 %id)
N59422 liver and spleen .b 1577 to 2042 465 to 1       465/465
(100 %)
1 diff
(99.8 %id)
AI082240 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1577 to 2044 468 to 1       468/468
(100 %)
0 diff
(100 %id)
AW005095 anaplastic oligodendroglioma, brain .b 1578 to 2041 464 to 1       464/469
(98 %)
1 diff
(99.8 %id)
AA476754   .b 1579 to 2044 466 to 2       465/466
(99 %)
0 diff
(100 %id)
W74250 heart .b 1580 to 2040 461 to 1       461/461
(100 %)
2 diff
(99.6 %id)
W85839 liver and spleen .b 1581 to 2008 431 to 1       431/432
(99 %)
3 diff
(99.4 %id)
DB552384 hippocampus .b 1584 to 2039 1 to 456     Submitted on the opposite strand 456/457
(99 %)
1 diff
(99.8 %id)
AA733122 heart .b 1591 to 2041 448 to 1       448/448
(100 %)
4 diff
(99.2 %id)
N34810 multiple sclerosis lesions .b 1592 to 2040 452 to 1       452/452
(100 %)
5 diff
(98.9 %id)
DB562271 hypothalamus .b 1595 to 2037 1 to 443     Submitted on the opposite strand 443/447
(99 %)
16 diff
(96.5 %id)
AI858939 anaplastic oligodendroglioma, brain .b 1598 to 2044 447 to 1       447/447
(100 %)
0 diff
(100 %id)
AA703322 liver and spleen .b 1599 to 2040 439 to 1       439/446
(98 %)
2 diff
(99.6 %id)
AL544886 placenta, Placenta Cot 25-normalized .b 1601 to 2044 1 to 444       444/444
(100 %)
2 diff
(99.6 %id)
AA885202 pooled .b 1602 to 2041 440 to 1       440/440
(100 %)
1 diff
(99.8 %id)
CN352621 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 1603 to 2044 442 to 1     Submitted on the opposite strand 442/442
(100 %)
0 diff
(100 %id)
AI168327 liver and spleen .b 1603 to 2040 438 to 1       438/438
(100 %)
0 diff
(100 %id)
AA032244 uterus .b 1604 to 2041 438 to 1   fully sequenced,   438/438
(100 %)
0 diff
(100 %id)
AI248997 liver and spleen .b 1605 to 2044 440 to 1       440/440
(100 %)
0 diff
(100 %id)
AI421683 brain, glioblastoma (pooled) .b 1605 to 2040 437 to 1       437/437
(100 %)
4 diff
(99.1 %id)
W46496 senescent fibroblast .b 1610 to 2044 444 to 4       441/444
(99 %)
0 diff
(100 %id)
AI859188 anaplastic oligodendroglioma, brain .b 1612 to 2044 433 to 1       433/433
(100 %)
0 diff
(100 %id)
AI880820 aorta .b 1613 to 2040 428 to 1       428/428
(100 %)
3 diff
(99.3 %id)
AA694066 liver and spleen .b 1614 to 2040 426 to 1       426/426
(100 %)
1 diff
(99.8 %id)
R99919 liver and spleen .b 1615 to 2041 437 to 4       434/438
(99 %)
0 diff
(100 %id)
CB054474 brain, glioblastoma (pooled) .b 1620 to 2044 472 to 48     Submitted on the opposite strand 425/472
(90 %)
0 diff
(100 %id)
AI749093 colon .b 1621 to 2040 436 to 17   AAA   420/420
(100 %)
9 diff
(97.9 %id)
W72915 heart .b 1628 to 2041 428 to 1       428/444
(96 %)
16 diff
(96.4 %id)
AI140255 lung .b 1628 to 2039 412 to 1       412/412
(100 %)
3 diff
(99.3 %id)
R68200 placenta .b 1632 to 2032 432 to 9       424/442
(95 %)
0 diff
(100 %id)
AA846347 parathyroid gland, parathyroid tumor .b 1635 to 2040 418 to 13   AAA   406/410
(99 %)
1 diff
(99.8 %id)
AA127723 uterus .b 1638 to 2041 402 to 1   fully sequenced,   402/402
(100 %)
4 diff
(99.1 %id)
AA927223 pooled .b 1640 to 2043 404 to 1       404/404
(100 %)
2 diff
(99.6 %id)
AA723187 heart .b 1641 to 2042 403 to 2       402/403
(99 %)
0 diff
(100 %id)
AA972658 carcinoid, lung .b 1641 to 2043 403 to 1       403/403
(100 %)
0 diff
(100 %id)
AI184484 lung .b 1641 to 2042 402 to 1       402/402
(100 %)
0 diff
(100 %id)
W67370 heart .b 1642 to 2040 400 to 1       400/404
(99 %)
1 diff
(99.8 %id)
BM807035 duodenal adenocarcinoma, cell line, small intestine .b 1642 to 2040 27 to 425   AAA   399/425
(93 %)
5 diff
(98.9 %id)
AI243503 pooled .b 1644 to 2040 410 to 14   AAA   397/397
(100 %)
3 diff
(99.3 %id)
AA635592 normal prostate, Prostate .b 1648 to 2040 393 to 1       393/393
(100 %)
5 diff
(98.8 %id)
AW016191   .b 1651 to 2040 406 to 18   AAA   389/398
(97 %)
1 diff
(99.8 %id)
AW057998 thymus, pooled .b 1656 to 2040 385 to 1       385/385
(100 %)
1 diff
(99.8 %id)
AA342789 Spleen .b 1661 to 2040 382 to 1       382/382
(100 %)
2 diff
(99.5 %id)
H30793 brain .b 1665 to 2044 380 to 1     Submitted on the opposite strand 380/380
(100 %)
0 diff
(100 %id)
AA031471 uterus .b 1665 to 2040 378 to 1   fully sequenced,   378/378
(100 %)
1 diff
(99.8 %id)
AI678600 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 1665 to 2042 379 to 1       379/379
(100 %)
3 diff
(99.3 %id)
AI239862 pooled .b 1666 to 2043 378 to 1       378/378
(100 %)
0 diff
(100 %id)
H84207 eye, retina .b 1668 to 2013 360 to 1       360/368
(97 %)
17 diff
(95.4 %id)
AI281016 adenocarcinoma, colon .b 1669 to 2040 393 to 22   AAA   372/372
(100 %)
2 diff
(99.5 %id)
AA047695 heart .b 1670 to 2040 374 to 1       374/424
(88 %)
3 diff
(99.3 %id)
AA127715 uterus .b 1672 to 2041 370 to 1   fully sequenced,   370/370
(100 %)
0 diff
(100 %id)
AI910574 pooled .b 1674 to 2040 380 to 14   AAA   367/367
(100 %)
4 diff
(99.0 %id)
AA459714   .b 1679 to 2042 366 to 3     Submitted on the opposite strand 364/366
(99 %)
0 diff
(100 %id)
AA411477 ovarian tumor, ovary .b 1680 to 2040 360 to 1       360/369
(97 %)
0 diff
(100 %id)
AI200290 lung .b 1682 to 2044 369 to 6       364/369
(98 %)
0 diff
(100 %id)
AA285177 germinal center B cell .b 1686 to 2040 384 to 30   AAA   355/355
(100 %)
1 diff
(99.8 %id)
BU726207 eye, Retina Foveal and Macular .b 1692 to 2040 366 to 18   fully sequenced, AAA   349/349
(100 %)
0 diff
(100 %id)
AA024547 heart .b 1697 to 1844 1 to 148   fully sequenced,   148/148
(100 %)
0 diff
(100 %id)
T48824 placenta .b 1698 to 2030 1 to 336   fully sequenced,   336/336
(100 %)
3 diff
(99.2 %id)
H60136 liver and spleen .b 1705 to 2013 321 to 1   fully sequenced,   321/321
(100 %)
18 diff
(94.4 %id)
DB535839 hippocampus .b 1708 to 2040 1 to 340   AAA Submitted on the opposite strand 340/340
(100 %)
21 diff
(93.9 %id)
H44573 breast .b 1711 to 2040 348 to 5   fully sequenced,   344/348
(98 %)
15 diff
(95.7 %id)
AA699813 liver and spleen .b 1713 to 2040 328 to 1       328/328
(100 %)
0 diff
(100 %id)
AA745767 Kidney .b 1713 to 2040 328 to 1       328/328
(100 %)
0 diff
(100 %id)
AI073812 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1713 to 2041 329 to 1       329/329
(100 %)
0 diff
(100 %id)
H79129 liver and spleen .b 1714 to 2013 311 to 1   fully sequenced,   311/311
(100 %)
12 diff
(96.2 %id)
AA766651 germinal center B cell .b 1725 to 2040 324 to 12   AAA   313/313
(100 %)
27 diff
(91.4 %id)
H01406 placenta .b 1729 to 2040 322 to 1   fully sequenced,   322/322
(100 %)
3 diff
(99.1 %id)
CB068801 Pancreas, Purified pancreatic islet .b 1732 to 2041 310 to 1   fully sequenced,   310/310
(100 %)
0 diff
(100 %id)
DV460663 cochlea, ear .b 1740 to 1850 111 to 1     Submitted on the opposite strand 111/111
(100 %)
0 diff
(100 %id)
AA405021 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1745 to 2044 302 to 3       300/302
(99 %)
0 diff
(100 %id)
AI004051   .b 1745 to 2043 300 to 1       300/300
(100 %)
2 diff
(99.4 %id)
AI217049 heart .b 1750 to 2042 293 to 1       293/293
(100 %)
0 diff
(100 %id)
AA919032 pooled .b 1766 to 2041 276 to 1       276/276
(100 %)
0 diff
(100 %id)
AW236452 pooled germ cell tumors .b 1766 to 2040 275 to 1       275/275
(100 %)
0 diff
(100 %id)
T48854 placenta .b 1767 to 2029 272 to 1   fully sequenced,   272/272
(100 %)
5 diff
(98.2 %id)
BQ721708 sympathetic trunk .b 1779 to 2040 1 to 262   AAA   262/262
(100 %)
0 diff
(100 %id)
AA303130 uterus .b 1782 to 2040 259 to 1       259/259
(100 %)
0 diff
(100 %id)
AI183885 lung .b 1790 to 2043 254 to 1       254/254
(100 %)
0 diff
(100 %id)
BU733110 eye, RPE and Choroid .b 1812 to 2040 247 to 19   fully sequenced, AAA   229/229
(100 %)
0 diff
(100 %id)
AA025253 heart .b 1814 to 2041 228 to 1   fully sequenced,   228/228
(100 %)
0 diff
(100 %id)
T25390   .b 1820 to 2040 225 to 1       225/232
(96 %)
6 diff
(97.5 %id)
R21760 placenta .b 1821 to 2039 219 to 1       219/219
(100 %)
0 diff
(100 %id)
DB538180 hippocampus .b 1830 to 2039 1 to 210     Submitted on the opposite strand 210/211
(99 %)
7 diff
(96.7 %id)
AA947473 pooled .b 1832 to 2044 217 to 5       213/217
(98 %)
0 diff
(100 %id)
AI383791 B-cell, chronic lymphotic leukemia .b 1847 to 2043 197 to 1       197/197
(100 %)
1 diff
(99.5 %id)
N99153 senescent fibroblast .b 1865 to 2040 189 to 14   AAA   176/179
(98 %)
3 diff
(98.4 %id)
AA989093 carcinoid, lung .b 1879 to 2041 163 to 1       163/163
(100 %)
0 diff
(100 %id)
AA127819 uterus .b 1880 to 2040 161 to 1   fully sequenced,   161/161
(100 %)
0 diff
(100 %id)
T48825 placenta .b 1883 to 2039 165 to 1   fully sequenced,   165/165
(100 %)
0 diff
(100 %id)
AA909393 pooled .b 1886 to 2040 155 to 1       155/155
(100 %)
0 diff
(100 %id)
H63359.
matches multiple genes
liver and spleen .b 1902 to 2035 134 to 1     also hits gene ATG10 134/134
(100 %)
0 diff
(100 %id)
AA730201 Ewing's sarcoma .b 1912 to 2044 133 to 1       133/140
(95 %)
0 diff
(100 %id)
AI061202   .b 1919 to 2040 158 to 37   AAA   122/122
(100 %)
0 diff
(100 %id)
AI191367 lung .b 1919 to 2042 124 to 1       124/124
(100 %)
0 diff
(100 %id)
AA887471 Kidney .b 1933 to 2044 115 to 4       112/115
(97 %)
0 diff
(100 %id)
AA319597 adrenal gland Gene ZCCHC3, variant not shown         Suspected internal deletion, this clone was ignored    
AW954950   Gene ZCCHC3, variant not shown         Suspected internal deletion, this clone was ignored    
BC107584 Pooled, 40 cell lines Gene ZCCHC3, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AV657344 corresponding non cancerous liver tissue Gene ZCCHC3, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
BU598846 mixed (pool of 40 RNAs) Gene ZCCHC3, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a-u, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C