cDNA accession Links to the sequence |
Tissue most 5' clones in red |
Match mRNA |
From bp to bp in mRNA |
From bp to bp in accs. |
Clone encodes complete protein (with AA variation) |
Features | Anomalies detected by AceView |
Accession match over (% length) |
Base differences relative to genome (% identity) |
AK091685 | brain | .a | 4819 to 7267 | 1 to 2449 | tiling clone, available from FLJ, | 2449/2449 (100 %) | 1 diff (100.0 %id) | ||
BC140767 | Brain, cerebellum, PCR rescued clones | .a | 13 to 4185 | 1 to 4173 | exact | tiling clone, | 4173/4173 (100 %) | 0 diff (100 %id) | |
BC171781 | Brain, cerebellum, PCR rescued clones | .a | 13 to 4185 | 1 to 4173 | exact | 4173/4173 (100 %) | 0 diff (100 %id) | ||
TI_1968230759 | .a | 2438 to 3601 | 14 to 1165 | 1152/1274 (90 %) | 9 diff (99.3 %id) | ||||
TI_1968230761 | .a | 1754 to 2894 | 9 to 1143 | 1135/1286 (88 %) | 14 diff (99.0 %id) | ||||
TI_1968230763 | .a | 2927 to 4055 | 9 to 1125 | 1117/1242 (89 %) | 6 diff (99.6 %id) | ||||
TI_1968234935 | .a | 662 to 1797 | 9 to 1129 | 1121/1260 (88 %) | 16 diff (98.8 %id) | ||||
TI_2194694838 | .a | 1 to 1125 | 78 to 1195 | tiling clone, | 1120/1301 (86 %) | 25 diff (98.1 %id) | |||
TI_2194694855 | .a | 3088 to 4185 | 1203 to 118 | 1086/1258 (86 %) | 0 diff (100 %id) | ||||
TI_2194695395 | .a | 3854 to 4185 | 1 to 332 | 332/1305 (25 %) | 4 diff (99.7 %id) | ||||
TI_2194695396 | .a | 2424 to 3674 | 1 to 1233 | 1233/1282 (96 %) | 28 diff (97.9 %id) | ||||
TI_2194695397 | .a | 1224 to 2399 | 10 to 1174 | 1165/1295 (89 %) | 15 diff (98.9 %id) | ||||
TI_2194695398 | .a | 1754 to 2897 | 8 to 1140 | 1133/1273 (89 %) | 11 diff (99.2 %id) | ||||
TI_2194695399 | .a | 3206 to 4185 | 11 to 989 | 979/1288 (76 %) | 2 diff (99.9 %id) | ||||
TI_2194695400 | .a | 2938 to 4107 | 16 to 1170 | 1155/1244 (92 %) | 17 diff (98.7 %id) | ||||
TI_2194695401 | .a | 776 to 1903 | 10 to 1131 | 1122/1253 (89 %) | 28 diff (97.8 %id) | ||||
TI_2194697611 | .a | 2153 to 3077 | 929 to 7 | 923/1183 (78 %) | 0 diff (100 %id) | ||||
TI_2194697649 | .a | 2908 to 3913 | 1005 to 9 | 997/1252 (79 %) | 0 diff (100 %id) | ||||
TI_2194698428 | .a | 652 to 1717 | 1 to 1058 | 1058/1293 (81 %) | 14 diff (99.0 %id) | ||||
TI_2194699405 | .a | 1 to 1086 | 72 to 1151 | 1080/1272 (84 %) | 15 diff (98.9 %id) | ||||
TI_2194699786 | .a | 3080 to 4185 | 1204 to 113 | 1092/1270 (85 %) | 0 diff (100 %id) | ||||
DA224781 | brain | .a | 3750 to 4414 | 2 to 667 | tiling clone, capped | 666/666 (100 %) | 2 diff (99.7 %id) | ||
DA226396 | brain | .a | 3580 to 4118 | 2 to 540 | capped | 539/539 (100 %) | 0 diff (100 %id) | ||
DA242072 | brain | .a | 3569 to 4148 | 2 to 581 | capped | 580/580 (100 %) | 0 diff (100 %id) | ||
DA300068 | hippocampus | .b-u | 1 to 573 | 2 to 574 | tiling clone, capped | 573/573 (100 %) | 1 diff (99.9 %id) | ||
DA328612 | hippocampus | .a | 3197 to 3757 | 2 to 562 | capped | 561/561 (100 %) | 1 diff (99.9 %id) | ||
DB309510 | hippocampus | .a | 6717 to 7267 | 551 to 1 | 551/551 (100 %) | 1 diff (99.9 %id) | |||
DA401831 | thalamus | .a | 3717 to 4271 | 2 to 556 | capped | 555/555 (100 %) | 0 diff (100 %id) | ||
BX104120 | whole brain | .b-u | 1561 to 2090 | 544 to 15 | AAA | 530/530 (100 %) | 0 diff (100 %id) | ||
Z40081 | brain, total brain | .b-u | 1817 to 2090 | 274 to 1 | 274/274 (100 %) | 0 diff (100 %id) | |||
Z44033 | brain, total brain | .b-u | 70 to 430 | 1 to 361 | 361/361 (100 %) | 2 diff (99.5 %id) | |||
F10287 | brain, total brain | .b-u | 1864 to 2090 | 226 to 1 | 226/226 (100 %) | 1 diff (99.6 %id) | |||
F12676 | brain, total brain | .b-u | 70 to 393 | 1 to 324 | 324/324 (100 %) | 1 diff (99.7 %id) | |||
F01575 | brain, total brain | .b-u | 1828 to 2090 | 263 to 1 | 263/263 (100 %) | 0 diff (100 %id) | |||
F05315 | brain, total brain | .b-u | 71 to 373 | 1 to 303 | 303/303 (100 %) | 1 diff (99.7 %id) | |||
CN280963 | embryonic stem cells, cell lines H1, H7, andH9 | .a | 3599 to 4182 | 1 to 584 | 584/584 (100 %) | 2 diff (99.7 %id) | |||
CR595814 | thymus | .b-u | 424 to 2028 | 1 to 1605 | exact | tiling clone, | 1605/1605 (100 %) | 0 diff (100 %id) | |
BX415642 | thymus | .b-u | 1222 to 2028 | 805 to 1 | fully sequenced, | 805/805 (100 %) | 2 diff (99.8 %id) | ||
BX415643 | thymus | .b-u | 424 to 1252 | 1 to 828 | exact | fully sequenced, | 828/828 (100 %) | 1 diff (99.9 %id) | |
AL538134 | brain, fetal brain | .a | 5071 to 6144 | 1 to 1054 | AAA | 1054/1076 (97 %) | 26 diff (97.6 %id) | ||
AL567158 | brain, fetal brain | .b-u | 1145 to 1998 | 869 to 24 | 846/910 (92 %) | 0 diff (100 %id) | |||
BX445085 | brain, fetal brain | .b-u | 1005 to 2041 | 1029 to 4 | 1026/1102 (93 %) | 0 diff (100 %id) | |||
BX445086 | brain, fetal brain | .a | 5071 to 6078 | 1 to 998 | 998/998 (100 %) | 18 diff (98.2 %id) | |||
BX452193 | brain, fetal brain | .b-u | 667 to 1587 | 1 to 909 | exact | 909/930 (97 %) | 24 diff (97.5 %id) | ||
BX478773 | .a | 3595 to 4056 | 9 to 470 | 462/470 (98 %) | 6 diff (98.8 %id) | ||||
DN831509 | pooled | .a | 700 to 1407 | 1 to 706 | 706/706 (100 %) | 3 diff (99.6 %id) | |||
DN831510 | pooled | .a | 663 to 1374 | 714 to 2 | Submitted on the opposite strand | 713/714 (99 %) | 0 diff (100 %id) | ||
DY654469 | pooled | .a | 476 to 893 | 1 to 418 | 418/418 (100 %) | 3 diff (99.3 %id) | |||
DY654470 | pooled | .a | 440 to 863 | 424 to 1 | 424/424 (100 %) | 3 diff (99.3 %id) | |||
DY655009 | pooled | .a | 458 to 904 | 1 to 447 | 447/447 (100 %) | 0 diff (100 %id) | |||
DY655010 | pooled | .a | 432 to 864 | 433 to 1 | 433/433 (100 %) | 0 diff (100 %id) | |||
DA525159 | brain | .a | 4820 to 5375 | 2 to 557 | capped | 556/556 (100 %) | 0 diff (100 %id) | ||
DB317415 | brain | .a | 6754 to 7267 | 514 to 1 | 514/514 (100 %) | 0 diff (100 %id) | |||
R13088 | whole brain | .b-u | 127 to 518 | 1 to 394 | 394/417 (94 %) | 10 diff (97.7 %id) | |||
R40518 | whole brain | .b-u | 1712 to 2090 | 392 to 12 | AAA | 381/396 (96 %) | 12 diff (97.0 %id) | ||
H14594 | whole brain | .b-u | 1723 to 2090 | 381 to 11 | AAA | 371/372 (99 %) | 6 diff (98.4 %id) | ||
H14700 | whole brain | .b-u | 71 to 549 | 1 to 480 | tiling clone, | 480/483 (99 %) | 9 diff (98.2 %id) | ||
R48160 | breast | .b-u | 1122 to 1523 | 1 to 411 | 411/445 (92 %) | 19 diff (95.8 %id) | |||
R48161 | breast | .b-u | 1720 to 2089 | 373 to 1 | 373/377 (98 %) | 14 diff (96.3 %id) | |||
N93352 | lung | .b-u | 1871 to 2089 | 224 to 6 | 219/224 (97 %) | 0 diff (100 %id) | |||
W25351 | lung | .b-u | 1302 to 1565 | 1 to 263 | 263/264 (99 %) | 2 diff (99.3 %id) | |||
AA393649 | .b-u | 1545 to 2016 | 1 to 472 | 472/472 (100 %) | 0 diff (100 %id) | ||||
AI022457 | liver and spleen | .b-u | 1627 to 2086 | 460 to 1 | 460/460 (100 %) | 1 diff (99.8 %id) | |||
AI139147 | heart | .b-u | 1636 to 2091 | 459 to 4 | tiling clone, | 456/459 (99 %) | 0 diff (100 %id) | ||
AW007160 | colon | .b-u | 1517 to 2090 | 574 to 1 | 574/574 (100 %) | 4 diff (99.4 %id) | |||
BF218384 | brain, glioblastoma | .b-u | 1360 to 1887 | 1 to 524 | 524/524 (100 %) | 4 diff (99.3 %id) | |||
NM_001010888.3 | .a | 13 to 7267 | 1 to 7255 | exact | RefSeq, AAA | 7255/7255 (100 %) | 0 diff (100 %id) | ||
DR003622 | hippocampus | .a | 1036 to 1649 | 8 to 621 | 614/621 (98 %) | 6 diff (99.1 %id) | |||
DB132656 | thymus | .a | 3722 to 4264 | 2 to 544 | capped | 543/543 (100 %) | 1 diff (99.9 %id) | ||
DB345254 | thymus | .b-u | 1234 to 1764 | 1 to 534 | Submitted on the opposite strand | 534/540 (98 %) | 4 diff (99.3 %id) | ||
TI_149310090 | .b-u | 1224 to 2090 | 945 to 90 | AAA | 856/985 (86 %) | 46 diff (95.4 %id) | |||
TI_149310138 | .b-u | 1223 to 2090 | 948 to 89 | AAA | 860/982 (87 %) | 33 diff (96.7 %id) | |||
BU688430 | lung | .b-u | 1440 to 2090 | 668 to 18 | AAA | 651/651 (100 %) | 6 diff (99.1 %id) | ||
BU688472 | lung | .b-u | 1425 to 2090 | 683 to 19 | AAA | 665/665 (100 %) | 3 diff (99.6 %id) | ||
TI_872700356 | .a | 75 to 821 | 6 to 753 | 748/764 (97 %) | 15 diff (98.1 %id) | ||||
TI_1210517254 | .a | 435 to 886 | 452 to 1 | 452/723 (62 %) | 4 diff (99.5 %id) | ||||
TI_1210517874 | .a | 414 to 884 | 470 to 2 | 469/752 (62 %) | 7 diff (99.1 %id) | ||||
BX647241 | amygdala | .b-u | 1360 to 1887 | 1 to 524 | available from DKFZ, AAA | Suspected internal deletion, suspected internal deletion, this clone was ignored | 524/524 (100 %) | 4 diff (99.3 %id) | |
NM_001010888.3 | .a | 13 to 7267 | 1 to 7255 | exact | RefSeq, AAA | 7255/7255 (100 %) | 0 diff (100 %id) | ||
DR003622 | hippocampus | .a | 1036 to 1649 | 8 to 621 | 614/621 (98 %) | 6 diff (99.1 %id) | |||
DB132656 | thymus | .a | 3722 to 4264 | 2 to 544 | capped | 543/543 (100 %) | 1 diff (99.9 %id) | ||
DB345254 | thymus | .b-u | 1234 to 1764 | 1 to 534 | Submitted on the opposite strand | 534/540 (98 %) | 4 diff (99.3 %id) | ||
TI_149310090 | .b-u | 1224 to 2090 | 945 to 90 | AAA | 856/985 (86 %) | 46 diff (95.4 %id) | |||
TI_149310138 | .b-u | 1223 to 2090 | 948 to 89 | AAA | 860/982 (87 %) | 33 diff (96.7 %id) | |||
BU688430 | lung | .b-u | 1440 to 2090 | 668 to 18 | AAA | 651/651 (100 %) | 6 diff (99.1 %id) | ||
BU688472 | lung | .b-u | 1425 to 2090 | 683 to 19 | AAA | 665/665 (100 %) | 3 diff (99.6 %id) | ||
TI_872700356 | .a | 75 to 821 | 6 to 753 | 748/764 (97 %) | 15 diff (98.1 %id) | ||||
TI_1210517254 | .a | 435 to 886 | 452 to 1 | 452/723 (62 %) | 4 diff (99.5 %id) | ||||
TI_1210517874 | .a | 414 to 884 | 470 to 2 | 469/752 (62 %) | 7 diff (99.1 %id) |
? | Gene Summary | Gene on genome | mRNA:.a, .b-u | Alternative mRNAs features, proteins, introns, exons, sequences | Expression Tissue | Function, regulation, related genes C |