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Gene ZBED3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
123 supporting clones for gene ZBED3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CD674177 eye, lens .a 1 to 496 1 to 496   tiling clone,   496/496
(100 %)
0 diff
(100 %id)
BE543093 cervical carcinoma cell line, cervix .a 633 to 944 458 to 764   tiling clone,   718/819
(87 %)
42 diff
(94.9 %id)
BF800957 colon_ins .a 794 to 1056 273 to 7     Submitted on the opposite strand 267/293
(91 %)
0 diff
(100 %id)
BF800958 colon_ins .a 794 to 1095 312 to 7   tiling clone, Submitted on the opposite strand 306/332
(92 %)
0 diff
(100 %id)
BF508552   .a 812 to 1363 566 to 18   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 549/559
(98 %)
6 diff
(99.0 %id)
AI679968 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 861 to 1334 474 to 1       474/474
(100 %)
1 diff
(99.8 %id)
AI401553 anaplastic oligodendroglioma, brain .a 890 to 1334 445 to 1       445/450
(98 %)
1 diff
(99.8 %id)
AW301709 Kidney .a 893 to 1335 443 to 1   tiling clone,   443/443
(100 %)
0 diff
(100 %id)
AI399944 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 894 to 1333 440 to 1       440/440
(100 %)
0 diff
(100 %id)
AI679528 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 895 to 1334 440 to 1       440/440
(100 %)
1 diff
(99.8 %id)
BI711322.
matches multiple genes
insulinoma, Pancreas .a 954 to 1348 396 to 1   tiling clone, also hits gene flysnee 396/396
(100 %)
4 diff
(99.0 %id)
AI241332 Kidney .a 986 to 1335 350 to 1       350/350
(100 %)
2 diff
(99.5 %id)
AA868501   .a 991 to 1334 344 to 1       344/344
(100 %)
2 diff
(99.5 %id)
AI522237 Kidney .a 1022 to 1334 313 to 1       313/313
(100 %)
0 diff
(100 %id)
AW243282 Kidney .a 1034 to 1306 274 to 2       273/274
(99 %)
0 diff
(100 %id)
AW780034 Kidney .a 1042 to 1328 293 to 7       287/293
(97 %)
0 diff
(100 %id)
AW087392 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .a 1074 to 1335 262 to 1       262/262
(100 %)
1 diff
(99.7 %id)
AI810713 Prostate .a 1085 to 1334 250 to 1       250/250
(100 %)
0 diff
(100 %id)
AI810967 Prostate .a 1087 to 1336 250 to 1       250/250
(100 %)
0 diff
(100 %id)
AW966684   .a 1088 to 1334 1 to 247   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 247/247
(100 %)
0 diff
(100 %id)
BE246617 leukopheresis .a 1090 to 1400 1 to 310       310/310
(100 %)
10 diff
(96.8 %id)
AA311214   .a 1101 to 1334 1 to 234       234/234
(100 %)
0 diff
(100 %id)
BG108739 retina, Retinal Pigment Epithelium sheets .a 1131 to 1334 1 to 211       211/218
(96 %)
6 diff
(97.3 %id)
BG150718 nasopharynx, normal epithelium .a 1134 to 1351 219 to 6       214/226
(94 %)
0 diff
(100 %id)
AA358598 lung .a 1158 to 1334 1 to 177       177/177
(100 %)
3 diff
(98.4 %id)
BF904710 marrow .a 1196 to 1544 1 to 348       348/355
(98 %)
11 diff
(97.0 %id)
BF911645 uterus_tumor .a 1331 to 1647 314 to 4     Submitted on the opposite strand 311/329
(94 %)
0 diff
(100 %id)
BF907463 uterus_tumor .a 1342 to 1650 308 to 1   tiling clone, Submitted on the opposite strand 308/386
(79 %)
5 diff
(98.8 %id)
AA325520 brain, cerebellum .a 1357 to 1714 1 to 360       360/360
(100 %)
3 diff
(99.2 %id)
AW964908   .a 1358 to 1801 1 to 450       450/528
(85 %)
12 diff
(97.8 %id)
DA800185 brain .a 1358 to 1919 2 to 563   tiling clone, capped   562/562
(100 %)
0 diff
(100 %id)
BF928243 nervous_tumor .a 1425 to 1712 287 to 2     Submitted on the opposite strand 286/287
(99 %)
0 diff
(100 %id)
BF923879 nervous_tumor .a 1521 to 1682 23 to 183       161/183
(87 %)
6 diff
(96.8 %id)
BY798736 eye .b 1 to 542 1 to 542 exact tiling clone,   542/542
(100 %)
0 diff
(100 %id)
BQ422638 embryonal carcinoma, cell line, testis .c 1 to 432 1 to 433 exact tiling clone,   433/1046
(41 %)
14 diff
(98.7 %id)
BG329998 eye, retinoblastoma .c 7 to 738 1 to 734       734/1107
(66 %)
29 diff
(97.4 %id)
DN998543 bone marrow .c 77 to 764 9 to 696       688/696
(98 %)
8 diff
(98.9 %id)
AK223624 Spleen .c 105 to 1135 1 to 1031       1031/1031
(100 %)
2 diff
(99.9 %id)
BC007239 Skin, melanotic melanoma. .c 119 to 1537 1 to 1419   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 1419/1420
(99 %)
1 diff
(100.0 %id)
NM_032367.2   .c 119 to 1538 1 to 1420   RefSeq, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 1420/1420
(100 %)
1 diff
(100.0 %id)
ES313628 beard hair, skin .c 121 to 570 1 to 451       451/505
(89 %)
8 diff
(98.5 %id)
BG469298 adenocarcinoma cell line, colon .c 125 to 994 1 to 864       864/864
(100 %)
17 diff
(98.1 %id)
DR762593 embryonic stem .c 150 to 854 1 to 702       702/702
(100 %)
4 diff
(99.5 %id)
BE302693 melanotic melanoma, skin .c 151 to 589 1 to 439       439/439
(100 %)
0 diff
(100 %id)
BG392866 embryonal carcinoma, cell line, testis .c 158 to 911 1 to 737       737/920
(80 %)
18 diff
(98.1 %id)
AA113749   .c 1507 to 1905 15 to 415   tiling clone,   401/415
(96 %)
6 diff
(98.6 %id)
AK123915 pericardium .c 1700 to 4604 1 to 2915   tiling clone, available from FLJ,   2915/2915
(100 %)
9 diff
(99.7 %id)
DA822498 pericardium .c 1701 to 2274 2 to 575   tiling clone, capped   574/577
(99 %)
1 diff
(99.9 %id)
DB122896 thymus .c 2313 to 2871 2 to 561   tiling clone, capped   560/560
(100 %)
3 diff
(99.5 %id)
DA382716 thalamus .c 2316 to 2872 2 to 558   tiling clone, capped   557/557
(100 %)
0 diff
(100 %id)
BI964860 Islets of Langerhans, Pancreas .c 2349 to 2864 1 to 516       516/516
(100 %)
1 diff
(99.9 %id)
DA345196 substantia nigra .c 2394 to 2940 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
AI222358 pooled .c 2411 to 2812 402 to 1       402/402
(100 %)
1 diff
(99.8 %id)
N73390   .c 2423 to 2749 1 to 327       327/327
(100 %)
3 diff
(99.1 %id)
DA629672 Kidney .c 2473 to 3050 2 to 580   capped   579/579
(100 %)
4 diff
(99.4 %id)
DA520047 brain .c 2481 to 3039 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
D61648   .c 2577 to 2958 1 to 380       380/380
(100 %)
5 diff
(98.7 %id)
CD556738 brain, Pituitary .c 2616 to 3439 1 to 827       827/870
(95 %)
8 diff
(99.1 %id)
CD514212 White Matter .c 2616 to 3285 1 to 675       675/910
(74 %)
8 diff
(99.2 %id)
BM727024 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 2626 to 3154 529 to 1   AAA Submitted on the opposite strand 529/547
(96 %)
4 diff
(99.3 %id)
BU741276 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 2626 to 3156 13 to 543     Submitted on the opposite strand 531/549
(96 %)
5 diff
(99.1 %id)
BU741287 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 2626 to 3151 13 to 538     Submitted on the opposite strand 526/538
(97 %)
6 diff
(98.9 %id)
TI_151780032   .c 2626 to 3154 612 to 79   AAA Submitted on the opposite strand 534/969
(55 %)
10 diff
(99.0 %id)
BF336494 colon .c 2684 to 2914 235 to 9       227/239
(94 %)
0 diff
(100 %id)
BF336506 colon .c 2693 to 2908 228 to 16       213/228
(93 %)
0 diff
(100 %id)
BF336540 colon .c 2693 to 2898 215 to 12       204/215
(94 %)
0 diff
(100 %id)
BF336541 colon .c 2693 to 2905 213 to 4       210/213
(98 %)
0 diff
(100 %id)
CV412364 colon .c 2693 to 2903 212 to 4     Submitted on the opposite strand 209/212
(98 %)
0 diff
(100 %id)
CV412367 colon .c 2693 to 2878 191 to 10     Submitted on the opposite strand 182/191
(95 %)
0 diff
(100 %id)
CV412361 colon .c 2694 to 2902 1 to 207       207/207
(100 %)
5 diff
(97.6 %id)
BF336547 colon .c 2705 to 2902 1 to 197       197/197
(100 %)
3 diff
(98.5 %id)
BF841855 head_neck .c 2716 to 3051 1 to 336       336/336
(100 %)
5 diff
(98.6 %id)
CV412377 colon .c 2716 to 2902 10 to 196       187/196
(95 %)
6 diff
(97.0 %id)
CV412368 colon .c 2726 to 2902 1 to 180       180/180
(100 %)
8 diff
(95.6 %id)
BG614392 embryonal carcinoma, testis .c 2769 to 3492 1 to 731       731/948
(77 %)
21 diff
(97.8 %id)
AK097900 thymus .c 2775 to 4604 1 to 1830   tiling clone, available from FLJ,   1830/1830
(100 %)
3 diff
(99.9 %id)
DB106423 thymus .c 2776 to 3338 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
CB115706 Liver .c 2777 to 3244 1 to 468       468/468
(100 %)
2 diff
(99.6 %id)
CB122505 Liver .c 2777 to 3369 1 to 593   tiling clone,   593/593
(100 %)
1 diff
(99.9 %id)
CB119841 Liver .c 2778 to 3323 1 to 546       546/546
(100 %)
0 diff
(100 %id)
DA548788   .c 2822 to 3397 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
AA243520.
matches multiple genes
germinal center B cell .c 2866 to 3247 1 to 382     also hits gene MEGF9 382/382
(100 %)
4 diff
(99.0 %id)
BG753017 eye, normal pigmented retinal epithelium .c 2880 to 3630 1 to 750       750/750
(100 %)
5 diff
(99.4 %id)
DA588595 lung .c 2964 to 3548 2 to 585   capped   584/584
(100 %)
3 diff
(99.5 %id)
DA368909 subthalamic nucleus .c 2973 to 3529 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
AA190953   .c 2999 to 3394 1 to 398       398/398
(100 %)
2 diff
(99.5 %id)
DA103557 cerebellum .c 3058 to 3625 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
BU521064 leiomyosarcoma, uterus .c 3131 to 3955 1 to 827   tiling clone,   827/828
(99 %)
3 diff
(99.7 %id)
CN285559 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 3248 to 3894 1 to 645       645/645
(100 %)
3 diff
(99.6 %id)
BM848535 myeloma .c 3317 to 3799 1 to 485       485/485
(100 %)
2 diff
(99.6 %id)
BF811252 colon_ins .c 3389 to 3538 1 to 147       147/147
(100 %)
8 diff
(94.6 %id)
BM718530 eye, fetal eye .c 3400 to 4042 1 to 642   fully sequenced, Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 642/642
(100 %)
2 diff
(99.7 %id)
BF898626 marrow .c 3470 to 3894 9 to 433       425/433
(98 %)
10 diff
(97.7 %id)
BI009467 kidney_tumor .c 3640 to 4064 17 to 441       425/441
(96 %)
6 diff
(98.7 %id)
BG033137 breast, mammary adenocarcinoma, cell line .c 3726 to 4517 1 to 794       794/1084
(73 %)
30 diff
(97.3 %id)
TI_153988844   .c 3752 to 4128 722 to 354       369/724
(50 %)
0 diff
(100 %id)
BI858492 breast, mammary adenocarcinoma, cell line .c 3897 to 4546 8 to 674       667/688
(96 %)
13 diff
(98.2 %id)
TI_57193643   .c 3897 to 4546 58 to 724       667/743
(89 %)
13 diff
(98.3 %id)
BM741545 stomach .c 3897 to 4473 1 to 577       577/577
(100 %)
0 diff
(100 %id)
BM750164 stomach .c 3897 to 4418 1 to 522       522/522
(100 %)
0 diff
(100 %id)
CA449845 Chondrosarcoma, Left Pelvis .c 3922 to 4564 659 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 641/641
(100 %)
2 diff
(99.7 %id)
BU608491 Human Lung Epithelial cells, lung .c 3926 to 4564 652 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 634/634
(100 %)
5 diff
(99.3 %id)
BG529822 embryonal carcinoma, testis .c 3968 to 4611 1 to 648       648/679
(95 %)
6 diff
(99.2 %id)
BM683576 eye, fetal eye .c 4012 to 4604 610 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 592/592
(100 %)
2 diff
(99.7 %id)
BQ232489 embryonal carcinoma, cell line, testis .c 4030 to 4796 1 to 773       773/849
(91 %)
14 diff
(98.4 %id)
BQ188274 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 4058 to 4565 1 to 508   fully sequenced, Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 508/508
(100 %)
4 diff
(99.3 %id)
BP398102 pancreatic islet .c 4069 to 4564 1 to 499     Submitted on the opposite strand 499/499
(100 %)
3 diff
(99.4 %id)
BP396553 pancreatic islet .c 4076 to 4566 1 to 494     Submitted on the opposite strand 494/500
(98 %)
4 diff
(99.2 %id)
DB327858 pericardium .c 4077 to 4604 530 to 1       530/531
(99 %)
2 diff
(99.7 %id)
BQ185714 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 4095 to 4564 488 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 470/470
(100 %)
0 diff
(100 %id)
BQ448352 Knee, Osteoarthritic Cartilage .c 4106 to 4604 514 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 496/496
(100 %)
1 diff
(99.8 %id)
BG993785 head_neck .c 4117 to 4342 55 to 279       225/279
(80 %)
10 diff
(96.5 %id)
BF939141 Prostate .c 4126 to 4564 452 to 11   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 442/442
(100 %)
5 diff
(98.9 %id)
AA190858   .c 4127 to 4549 429 to 1       429/429
(100 %)
7 diff
(98.4 %id)
AI355755 lung .c 4136 to 4564 429 to 1       429/429
(100 %)
0 diff
(100 %id)
AI421730 brain, glioblastoma (pooled) .c 4149 to 4608 460 to 1       460/460
(100 %)
0 diff
(100 %id)
AA243461 germinal center B cell .c 4185 to 4566 387 to 6       382/387
(98 %)
0 diff
(100 %id)
AL532280 brain, fetal liver, Liver, neuroblastoma cells .c 4209 to 4552 1 to 344       344/349
(98 %)
6 diff
(98.3 %id)
BX464308 fetal liver, Liver .c 4209 to 4552 1 to 344       344/349
(98 %)
6 diff
(98.3 %id)
AA568943 colon, colon tumor RER+ .c 4213 to 4547 335 to 1       335/335
(100 %)
0 diff
(100 %id)
AL532279 brain, fetal liver, Liver, neuroblastoma cells .c 4218 to 4535 318 to 1       318/318
(100 %)
9 diff
(97.2 %id)
AI887983 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 4255 to 4780 551 to 26       526/551
(95 %)
0 diff
(100 %id)
AI424120 brain, glioblastoma (pooled) .c 4314 to 4605 288 to 1       288/288
(100 %)
6 diff
(98.0 %id)
R91996 liver and spleen .c 4334 to 4707 386 to 1       386/388
(99 %)
25 diff
(93.6 %id)
AA113241   .c 4388 to 4800 417 to 5   tiling clone,   413/417
(99 %)
0 diff
(100 %id)
AI886180 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 4469 to 4783 316 to 1   tiling clone,   316/316
(100 %)
1 diff
(99.7 %id)
AI573007 lymph node, lymphoma, follicular mixed small and largecell .c 4505 to 4779 275 to 1       275/275
(100 %)
0 diff
(100 %id)
AV760767 bone marrow .d 1 to 432 1 to 432 G6F tiling clone,   432/612
(70 %)
7 diff
(98.9 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C