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Gene XYLBTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
97 supporting clones for gene XYLB back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_005108.3   .a 1 to 3683 1 to 3683 exact RefSeq,   3683/3683
(100 %)
1 diff
(100.0 %id)
DA047556   .a 21 to 577 2 to 558   tiling clone, capped   557/557
(100 %)
3 diff
(99.5 %id)
DA354376 substantia nigra .a 37 to 605 2 to 571   capped   570/570
(100 %)
3 diff
(99.5 %id)
DA382139 thalamus .a 37 to 588 2 to 554   capped   553/553
(100 %)
4 diff
(99.3 %id)
BX493923   .a 39 to 538 1 to 500       500/500
(100 %)
3 diff
(99.4 %id)
BC052984 Skin, melanotic melanoma. .a 43 to 3273 1 to 3230 D85E F456L D457M A458P P459R ... tiling clone, available from MGC, AAA   3230/3230
(100 %)
10 diff
(99.7 %id)
BU155907 melanotic melanoma, skin .a 44 to 861 1 to 827   available from MGC,   827/828
(99 %)
26 diff
(96.9 %id)
DA678407   .a 48 to 579 2 to 533   capped   532/532
(100 %)
2 diff
(99.7 %id)
AK025728   .a 49 to 2027 1 to 1979 T365A available from FLJ, AAA   1979/1979
(100 %)
4 diff
(99.8 %id)
AU099000   .a 49 to 348 1 to 300       300/300
(100 %)
5 diff
(98.4 %id)
BP240566 Liver .a 49 to 612 1 to 564       564/564
(100 %)
6 diff
(99.0 %id)
BP285470 lung .a 49 to 631 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
DB273259 uterus .a 50 to 465 2 to 417   capped   416/416
(100 %)
1 diff
(99.8 %id)
AK314386 Kidney .a 53 to 1720 1 to 1668 D85E     1668/1668
(100 %)
4 diff
(99.8 %id)
DA479242   .a 54 to 628 2 to 576   capped   575/575
(100 %)
3 diff
(99.5 %id)
DA621922 Kidney .a 54 to 596 2 to 544   capped   543/543
(100 %)
3 diff
(99.5 %id)
DA623840 Kidney .a 54 to 607 2 to 555   capped   554/554
(100 %)
3 diff
(99.5 %id)
DA664817   .a 54 to 607 2 to 556   capped   555/555
(100 %)
4 diff
(99.3 %id)
BC030231 Brain, anaplastic oligodendroglioma with1p/19q loss .a 55 to 668 24 to 637   available from MGC, AAA   614/639
(96 %)
15 diff
(97.7 %id)
BI554069 anaplastic oligodendroglioma with 1p/19qloss, brain .a 55 to 668 25 to 638   available from MGC,   614/701
(87 %)
12 diff
(98.3 %id)
TI_44385067   .a 55 to 668 77 to 690       614/864
(71 %)
12 diff
(98.7 %id)
DA643469   .a 57 to 605 2 to 550   capped   549/549
(100 %)
3 diff
(99.5 %id)
BC137076 Lung, PCR rescued clones .a 69 to 2389 1 to 2321 exact     2321/2321
(100 %)
4 diff
(99.9 %id)
BC137080 Testicle, PCR rescued clones .a 69 to 2392 1 to 2324 exact     2324/2324
(100 %)
4 diff
(99.9 %id)
DA105241 cerebellum .a 69 to 618 2 to 551   capped   550/550
(100 %)
2 diff
(99.7 %id)
DA448553 tongue, tumor tissue .a 96 to 451 2 to 361   capped   360/360
(100 %)
5 diff
(98.7 %id)
DB458052 testis .a 96 to 584 1 to 489       489/489
(100 %)
2 diff
(99.6 %id)
CR603420 HeLa cells Cot 25-normalized .a 101 to 1993 1 to 1893 exact tiling clone,   1893/1893
(100 %)
0 diff
(100 %id)
AL556887 placenta .a 101 to 994 1 to 890       890/890
(100 %)
7 diff
(99.3 %id)
TI_1948212544   .a 109 to 752 129 to 776       648/1404
(46 %)
38 diff
(97.3 %id)
TI_1948212545   .a 109 to 1109 141 to 1150       1010/1280
(78 %)
41 diff
(96.8 %id)
TI_1948213394   .a 109 to 955 135 to 976       842/1241
(67 %)
26 diff
(98.0 %id)
EL734743 mixed .a 110 to 669 1 to 560       560/560
(100 %)
6 diff
(99.0 %id)
BG760888 melanotic melanoma, high MDR (cell line), skin .a 112 to 850 1 to 744       744/746
(99 %)
10 diff
(98.7 %id)
BG761093 melanotic melanoma, high MDR (cell line), skin .a 112 to 840 1 to 732       732/732
(100 %)
19 diff
(97.5 %id)
AA360549   .a 115 to 453 1 to 343       343/343
(100 %)
6 diff
(98.3 %id)
BP270503 small intestine .a 126 to 708 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
BP270510 small intestine .a 126 to 706 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
BI090475 cervix .a 138 to 919 1 to 783       783/783
(100 %)
6 diff
(99.3 %id)
CX753306 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 220 to 902 1 to 683     Submitted on the opposite strand 683/683
(100 %)
3 diff
(99.6 %id)
BE535378 cervix .a 459 to 1230 1 to 775       775/1156
(67 %)
17 diff
(98.6 %id)
TI_2016724731   .a 538 to 1730 1 to 1186       1186/1301
(91 %)
17 diff
(98.7 %id)
TI_1948213395   .a 615 to 1502 1008 to 121       888/1324
(67 %)
15 diff
(98.9 %id)
TI_2016725129   .a 681 to 1788 1105 to 8       1098/1264
(86 %)
8 diff
(99.4 %id)
AK001205   .a 730 to 2028 1 to 1299   available from FLJ,   1299/1299
(100 %)
0 diff
(100 %id)
AU123748   .a 731 to 1577 2 to 848   capped   847/847
(100 %)
1 diff
(99.9 %id)
TI_1948212547   .a 755 to 1502 868 to 119       750/1395
(53 %)
24 diff
(98.3 %id)
BX390854   .a 845 to 1639 1 to 806       804/813
(98 %)
32 diff
(96.1 %id)
TI_2016728763   .a 992 to 2089 1096 to 9       1088/1279
(85 %)
11 diff
(99.2 %id)
EC460206 Prostate .a 995 to 1094 1 to 100       100/100
(100 %)
0 diff
(100 %id)
TI_2016728555   .a 997 to 2089 1096 to 9       1088/1251
(86 %)
7 diff
(99.5 %id)
AL579011 placenta .a 1033 to 1993 962 to 1       962/962
(100 %)
9 diff
(99.1 %id)
TI_2016725655   .a 1205 to 2379 5 to 1166       1162/1273
(91 %)
24 diff
(98.2 %id)
TI_2016725325   .a 1305 to 2396 15 to 1094       1080/1258
(85 %)
25 diff
(98.1 %id)
BU194672 melanotic melanoma, skin .a 1312 to 2026 1 to 716   AAA   716/716
(100 %)
2 diff
(99.8 %id)
BX282675 breast, mammary adenocarcinoma, cell line .a 1337 to 1807 8 to 478       471/478
(98 %)
8 diff
(98.4 %id)
TI_59391904   .a 1337 to 2062 90 to 815       726/734
(98 %)
1 diff
(99.9 %id)
BM013957 breast, mammary adenocarcinoma, cell line .a 1338 to 2062 1 to 725       725/733
(98 %)
1 diff
(99.9 %id)
CR746975 eye, retinoblastoma .a 1340 to 1811 11 to 482       472/482
(97 %)
9 diff
(98.2 %id)
BM823852 Ascites, stomach .a 1344 to 1925 1 to 582       582/582
(100 %)
0 diff
(100 %id)
AK022601   .a 1544 to 3683 1 to 2140   tiling clone, available from FLJ,   2140/2140
(100 %)
2 diff
(100.0 %id)
AU124699   .a 1545 to 2366 2 to 819   capped   818/818
(100 %)
15 diff
(98.2 %id)
BF593198 Kidney .a 1641 to 2026 392 to 7       386/392
(98 %)
0 diff
(100 %id)
BE890351 melanotic melanoma, skin .a 1693 to 2505 1 to 802       802/871
(92 %)
40 diff
(95.5 %id)
BG031172 breast, mammary adenocarcinoma, cell line .a 1797 to 2028 1 to 232   AAA   232/232
(100 %)
3 diff
(98.8 %id)
BE782125 eye, retinoblastoma .a 1935 to 2571 1 to 636       636/965
(65 %)
16 diff
(98.4 %id)
CN285955 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2192 to 2823 1 to 632       632/632
(100 %)
1 diff
(99.9 %id)
BG431616 Kidney .a 2493 to 3195 1 to 703       703/705
(99 %)
8 diff
(98.9 %id)
W01234 liver and spleen .a 2548 to 3094 1 to 536       536/539
(99 %)
14 diff
(97.5 %id)
BX485668   .a 2653 to 2903 1 to 251       251/251
(100 %)
0 diff
(100 %id)
AW754059 colon .a 2785 to 3394 17 to 625       609/625
(97 %)
20 diff
(96.8 %id)
BU932999 mixed (pool of 40 RNAs) .a 2917 to 3730 1 to 817       817/817
(100 %)
17 diff
(98.0 %id)
AW771907 Kidney .a 2949 to 3322 379 to 6       374/379
(98 %)
0 diff
(100 %id)
AU148505   .a 3147 to 3683 539 to 1       539/540
(99 %)
8 diff
(98.6 %id)
AA777793 liver and spleen .a 3260 to 3779 522 to 3   tiling clone,   520/522
(99 %)
0 diff
(100 %id)
AK293325 breast .b 1 to 1737 1 to 1737 exact tiling clone,   1737/1737
(100 %)
2 diff
(99.9 %id)
DC300462 breast .b 1 to 523 1 to 523       523/523
(100 %)
2 diff
(99.7 %id)
DB270890 uterus .c 1 to 545 2 to 546   tiling clone, capped   545/545
(100 %)
0 diff
(100 %id)
AI557328 Prostate .c 488 to 1123 1 to 640   tiling clone, Submitted on the opposite strand 640/854
(74 %)
24 diff
(97.2 %id)
BE772384 prostate_tumor .d 1 to 381 1 to 393 S118T A119H H120T T121H L122C ... tiling clone,   393/393
(100 %)
11 diff
(97.3 %id)
BU959995 mixed (pool of 40 RNAs) .e 1 to 311 1 to 311 exact tiling clone,   311/952
(32 %)
3 diff
(99.7 %id)
TI_57244827   .f 1 to 672 41 to 714 exact tiling clone,   674/714
(94 %)
11 diff
(98.5 %id)
BC039712 Brain, fetal, whole pooled .f 20 to 1684 1 to 1662 exact tiling clone, available from MGC, AAA   1662/1662
(100 %)
10 diff
(99.4 %id)
BI917458 brain .f 20 to 672 1 to 654 exact available from MGC,   654/654
(100 %)
5 diff
(99.3 %id)
BM709607 eye, optic nerve .f 916 to 1154 1 to 239   tiling clone, fully sequenced,   239/239
(100 %)
0 diff
(100 %id)
BU733607 eye, optic nerve .f 1124 to 1688 583 to 19   fully sequenced, AAA   565/565
(100 %)
0 diff
(100 %id)
DA148309 amygdala .g 1 to 568 2 to 569   tiling clone, to resequence, capped   568/568
(100 %)
0 diff
(100 %id)
DB523541 testis .g 138 to 861 1 to 723 *4S tiling clone, Submitted on the opposite strand 723/723
(100 %)
5 diff
(99.4 %id)
AA564124 germ cell tumor .g 347 to 864 516 to 1   tiling clone,   516/516
(100 %)
3 diff
(99.5 %id)
DB301580 amygdala .g 1208 to 1729 529 to 7   tiling clone, to resequence,   523/529
(98 %)
0 diff
(100 %id)
BF926132 nervous_tumor .h-u 1 to 388 1 to 389   tiling clone,   389/389
(100 %)
10 diff
(97.5 %id)
BX643517   .h-u 165 to 823 1 to 659 R67G tiling clone,   659/659
(100 %)
1 diff
(99.9 %id)
AA094335   Gene XYLB, variant not shown              
AB015046 Liver Gene XYLB, variant not shown         This clone was ignored    
T87775 liver and spleen Gene XYLB, variant not shown       fully sequenced,      
T87776 liver and spleen Gene XYLB, variant not shown       fully sequenced,      
AI239790 pooled Gene XYLB, variant not shown              
AI708177 colon Gene XYLB, variant not shown              
AW242970 Kidney Gene XYLB, variant not shown              
CD556879 brain, Pituitary Gene XYLB, variant not shown              
DA938157 Spleen Gene XYLB, variant not shown       capped      
DB332980 Spleen Gene XYLB, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC