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Gene XRCC2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
57 supporting clones for gene XRCC2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF035587   .a 1 to 3067 1 to 3067 exact tiling clone, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 3067/3067
(100 %)
0 diff
(100 %id)
NM_005431.1   .a 1 to 3067 1 to 3067 exact RefSeq, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 3067/3067
(100 %)
0 diff
(100 %id)
Y08837   .a 5 to 1585 1 to 1581 exact AAA   1581/1581
(100 %)
3 diff
(99.9 %id)
DN998301 breast cancer, Mammary gland (cancer tissue) .a 12 to 485 32 to 505       474/505
(93 %)
6 diff
(98.9 %id)
DA690667   .a 17 to 582 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
FN130062 breast carcinoma .a 21 to 108 88 to 1     Submitted on the opposite strand 88/88
(100 %)
6 diff
(93.2 %id)
AK313607 testis .a 25 to 929 1 to 905 exact     905/905
(100 %)
0 diff
(100 %id)
BX283699 brain, neuroblastoma, cell line .a 25 to 544 1 to 520       520/520
(100 %)
1 diff
(99.9 %id)
DB448215 testis .a 25 to 453 1 to 428       428/428
(100 %)
3 diff
(99.3 %id)
BC042137 Brain, neuroblastoma .a 26 to 1579 1 to 1552 exact available from MGC, AAA   1552/1552
(100 %)
1 diff
(100.0 %id)
DA504110 brain .a 26 to 602 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
BQ068576 brain, neuroblastoma, cell line .a 26 to 1003 27 to 1015 W231C C259W L260F S262K N263*     989/1020
(96 %)
32 diff
(96.9 %id)
DB035558 testis .a 26 to 580 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DB082593 testis .a 26 to 571 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
CN290945 embryonic stem cells, cell lines H1, H7, andH9 .a 29 to 761 13 to 745       733/745
(98 %)
6 diff
(99.2 %id)
CN290947 embryonic stem cells, DMSO-treated H9 cellline .a 62 to 674 1 to 613       613/613
(100 %)
1 diff
(99.9 %id)
DB088166 testis .a 64 to 617 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
EL736034 mixed .a 87 to 719 1 to 633       633/633
(100 %)
0 diff
(100 %id)
TI_1948224704   .a 87 to 896 133 to 945       813/1347
(60 %)
29 diff
(97.9 %id)
TI_1948224705   .a 87 to 902 127 to 958       832/1212
(68 %)
32 diff
(97.4 %id)
TI_1948225014   .a 87 to 870 129 to 915       787/1502
(52 %)
15 diff
(99.1 %id)
TI_1948225015   .a 87 to 825 125 to 869       745/1200
(62 %)
29 diff
(97.6 %id)
TI_1948225341   .a 87 to 928 126 to 967       842/1389
(60 %)
25 diff
(98.3 %id)
TI_1948225342   .a 87 to 856 129 to 908       780/1211
(64 %)
31 diff
(97.5 %id)
TI_1948225668   .a 87 to 924 128 to 973       846/1436
(58 %)
26 diff
(98.2 %id)
TI_1948225669   .a 87 to 757 131 to 805       675/1211
(55 %)
65 diff
(94.7 %id)
CN290949 embryonic stem cells, cell lines H1, H7, andH9 .a 411 to 1137 1 to 728       728/728
(100 %)
4 diff
(99.5 %id)
TI_1948225671   .a 664 to 934 385 to 116       270/291
(92 %)
0 diff
(100 %id)
DA031298   .a 833 to 1332 2 to 500   capped   499/503
(99 %)
6 diff
(98.9 %id)
DB513363 testis .a 1148 to 1585 1 to 437   AAA Submitted on the opposite strand 437/437
(100 %)
4 diff
(99.1 %id)
BF744461 breast .a 1396 to 1837 7 to 448       442/448
(98 %)
6 diff
(98.7 %id)
BU182381 leiomyosarcoma, uterus .a 1587 to 2416 1 to 841       841/927
(90 %)
22 diff
(97.7 %id)
DA503298 brain .a 1646 to 2185 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
BE780820 eye, retinoblastoma .a 2136 to 2936 1 to 794       794/794
(100 %)
33 diff
(95.9 %id)
DW424682 Liver .a 2232 to 2502 17 to 287       271/287
(94 %)
6 diff
(98.0 %id)
CN290946 embryonic stem cells, DMSO-treated H9 cellline .a 2277 to 2960 1 to 685       685/685
(100 %)
4 diff
(99.5 %id)
DA568396 whole embryo, mainly head .a 2292 to 2787 2 to 497   capped   496/770
(64 %)
1 diff
(99.9 %id)
BQ430896 epithelioid carcinoma, Pancreas .b 1 to 720 57 to 784 V4X A11R F12L G13R A14G ... tiling clone,   728/961
(75 %)
39 diff
(96.0 %id)
CR749256 testis .c 1 to 4728 1 to 4719 R132H tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 4719/4719
(100 %)
9 diff
(99.9 %id)
CN290948 embryonic stem cells, DMSO-treated H9 cellline .c 2822 to 3400 7 to 579       573/580
(98 %)
8 diff
(98.7 %id)
BG285767 bladder, transitional cell papilloma, cell line .c 2880 to 3527 42 to 705       664/705
(94 %)
6 diff
(99.2 %id)
BG494177 lung, mucoepidermoid carcinoma .c 3377 to 3834 1 to 460       460/798
(57 %)
7 diff
(99.2 %id)
BG776777 lung, mucoepidermoid carcinoma .c 3377 to 3832 1 to 456   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 456/456
(100 %)
2 diff
(99.6 %id)
CN264470 embryonic stem cells, cell lines H1, H7, andH9 .c 3416 to 3828 1 to 414   tiling clone,   414/414
(100 %)
7 diff
(98.4 %id)
BX104116 liver and spleen .c 3712 to 4453 1 to 742       742/742
(100 %)
1 diff
(99.9 %id)
DW423695 Liver .c 3803 to 4075 17 to 289       273/291
(93 %)
4 diff
(98.7 %id)
CX781139 human embryonic stem cells .c 3916 to 4723 1 to 808   tiling clone,   808/808
(100 %)
1 diff
(99.9 %id)
AA978101 pooled .c 4068 to 4501 433 to 1       433/433
(100 %)
2 diff
(99.6 %id)
AW080499 pooled .c 4081 to 4501 425 to 1       425/426
(99 %)
9 diff
(97.9 %id)
AI346114 adenocarcinoma, colon .c 4282 to 4728 458 to 12   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 447/447
(100 %)
1 diff
(99.8 %id)
AA677337 liver and spleen .c 4291 to 4699 446 to 36       411/446
(92 %)
0 diff
(100 %id)
AI680402 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .c 4381 to 4734 354 to 1       354/354
(100 %)
1 diff
(99.8 %id)
CN314026 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 4503 to 5158 1 to 656   tiling clone,   656/656
(100 %)
4 diff
(99.4 %id)
BQ881237 brain, neuroblastoma, cell line .c 4514 to 5303 55 to 856   tiling clone,   802/992
(80 %)
42 diff
(95.8 %id)
BE501066 pooled germ cell tumors .c 4568 to 4923 1 to 356     Submitted on the opposite strand 356/356
(100 %)
1 diff
(99.8 %id)
BF745426 breast .c 5284 to 5460 1 to 177   tiling clone,   177/177
(100 %)
10 diff
(94.4 %id)
AA255626 germinal center B cell Gene XRCC2, variant not shown         This clone was ignored    
AA255634 germinal center B cell Gene XRCC2, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI