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Gene XPCTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
469 supporting clones for gene XPC back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC306629 cerebellum .a 1 to 402 1 to 405   tiling clone,   405/405
(100 %)
1 diff
(99.8 %id)
DC325258 brain .a 29 to 606 1 to 581       581/582
(99 %)
2 diff
(99.7 %id)
D21089 cervical carcinoma .a 111 to 3664 1 to 3557 A499V Q939K     3557/3558
(99 %)
6 diff
(99.9 %id)
NM_004628.4   .a 112 to 3826 1 to 3718 exact RefSeq, AAA   3718/3718
(100 %)
2 diff
(100.0 %id)
AL709045 human skeletal muscle .a 123 to 693 1 to 573       573/573
(100 %)
4 diff
(99.4 %id)
DA943768 Spleen .a 156 to 739 2 to 589   capped   588/588
(100 %)
3 diff
(99.5 %id)
AU130155   .a 179 to 939 2 to 768   capped   767/809
(94 %)
10 diff
(98.8 %id)
DA341374 substantia nigra .a 184 to 741 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
BX474915   .a 189 to 921 1 to 736       736/736
(100 %)
6 diff
(99.2 %id)
BX497971 Liver .a 190 to 690 1 to 502       502/502
(100 %)
7 diff
(98.7 %id)
DA852966 placenta .a 190 to 740 2 to 556   capped   555/555
(100 %)
4 diff
(99.3 %id)
DA943011 Spleen .a 197 to 737 2 to 546   capped   545/545
(100 %)
3 diff
(99.5 %id)
DB162890 thymus .a 203 to 782 2 to 582   capped   579/586
(98 %)
4 diff
(99.4 %id)
DB281507 uterus .a 206 to 748 2 to 547   capped   546/547
(99 %)
3 diff
(99.5 %id)
DB285924 uterus .a 206 to 750 2 to 549   capped   548/548
(100 %)
2 diff
(99.7 %id)
DB227102 trachea .a 366 to 935 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
X65024   .a 373 to 3827 1 to 3455   tiling clone,   3455/3455
(100 %)
5 diff
(99.9 %id)
AK222844 Liver .a 416 to 3826 1 to 3411   tiling clone, AAA   3411/3411
(100 %)
2 diff
(100.0 %id)
DB078247 testis .a 468 to 1031 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
AU130697   .a 544 to 1338 2 to 802   capped   801/856
(93 %)
11 diff
(98.8 %id)
DA787713 brain .a 578 to 1150 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
BU506961 leiomyosarcoma, uterus .a 697 to 1562 1 to 869       869/944
(92 %)
21 diff
(97.8 %id)
AU127391   .a 1274 to 1891 2 to 615   capped   614/620
(99 %)
13 diff
(98.0 %id)
AA287404 germinal center B cell .a 2302 to 2897 1 to 592       592/595
(99 %)
10 diff
(98.4 %id)
AL537155 brain, fetal brain .a 2832 to 3753 920 to 1       920/921
(99 %)
13 diff
(98.6 %id)
BX431153 brain, fetal brain .a 2951 to 3829 1 to 875       875/875
(100 %)
9 diff
(99.0 %id)
BX451523.
matches multiple genes
brain, fetal brain .a 2953 to 3824 1 to 875   fully sequenced, This clone was ignored, also hits gene CHMP5 875/875
(100 %)
25 diff
(97.2 %id)
BM706557 eye, eye anterior segment .a 2993 to 3146 9 to 162       154/162
(95 %)
6 diff
(96.3 %id)
AI983317 brain, three pooled meningiomas .a 2994 to 3665 670 to 1       670/681
(98 %)
1 diff
(99.9 %id)
BE504558 carcinoid, lung .a 3001 to 3668 668 to 1       668/668
(100 %)
2 diff
(99.8 %id)
AI479223 Kidney .a 3074 to 3826 749 to 1       749/767
(97 %)
20 diff
(97.4 %id)
AI652687 pooled germ cell tumors .a 3078 to 3826 749 to 1       749/749
(100 %)
15 diff
(98.0 %id)
AI479233 Kidney .a 3083 to 3829 745 to 7       739/745
(99 %)
0 diff
(100 %id)
AI656332 pooled germ cell tumors .a 3088 to 3829 739 to 1       739/741
(99 %)
9 diff
(98.8 %id)
AI091587 parathyroid gland, parathyroid tumor .a 3097 to 3826 741 to 12   AAA   730/730
(100 %)
7 diff
(99.1 %id)
AI968346 pooled germ cell tumors .a 3103 to 3826 750 to 26   AAA   725/725
(100 %)
19 diff
(97.4 %id)
AU152601   .a 3110 to 3664 550 to 1       550/550
(100 %)
12 diff
(97.9 %id)
AW003803 pooled germ cell tumors .a 3111 to 3829 722 to 6       717/722
(99 %)
0 diff
(100 %id)
AU152166   .a 3116 to 3665 544 to 1       544/544
(100 %)
14 diff
(97.5 %id)
TI_154046625   .a 3138 to 3826 805 to 117   AAA   689/964
(71 %)
2 diff
(99.8 %id)
AI968741 pooled germ cell tumors .a 3144 to 3827 683 to 1       683/683
(100 %)
17 diff
(97.6 %id)
AI634645 Kidney .a 3152 to 3828 678 to 1       678/678
(100 %)
5 diff
(99.3 %id)
CA426594 cell lines, Chondrosarcoma .a 3152 to 3826 692 to 19   AAA   674/674
(100 %)
2 diff
(99.8 %id)
BG285952 bladder, transitional cell papilloma, cell line .a 3160 to 3829 14 to 681       668/1027
(65 %)
5 diff
(99.6 %id)
BU631737 cell lines, Chondrosarcoma .a 3161 to 3826 684 to 19   AAA   666/666
(100 %)
1 diff
(99.9 %id)
AW237048 pooled germ cell tumors .a 3183 to 3829 647 to 1       647/647
(100 %)
4 diff
(99.4 %id)
AA639662 colon, colon tumor RER+ .a 3185 to 3826 640 to 1       640/640
(100 %)
4 diff
(99.4 %id)
AW470064 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 3192 to 3718 528 to 2       527/528
(99 %)
0 diff
(100 %id)
H99589 melanocyte .a 3194 to 3303 1 to 110       110/110
(100 %)
4 diff
(96.4 %id)
CF129648 Chondrosarcoma Lung Metastasis cell lines, lung .a 3194 to 3739 1 to 546       546/546
(100 %)
0 diff
(100 %id)
TI_154191393   .a 3194 to 3792 51 to 659       609/657
(92 %)
7 diff
(99.0 %id)
BU732629 eye, optic nerve .a 3194 to 3826 651 to 19   AAA   633/633
(100 %)
1 diff
(99.9 %id)
AA857856 pharynx, squamous cell carcinoma .a 3203 to 3664 460 to 1       460/460
(100 %)
4 diff
(99.2 %id)
AA287323 germinal center B cell .a 3206 to 3829 620 to 3       618/626
(98 %)
0 diff
(100 %id)
AA903694 leiomyosarcoma, soft tissue .a 3211 to 3673 463 to 2       462/463
(99 %)
0 diff
(100 %id)
TI_158431240   .a 3212 to 3826 719 to 102   AAA   618/832
(74 %)
8 diff
(99.1 %id)
AW471317 adenocarcinoma, Pancreas .a 3216 to 3718 503 to 2       502/503
(99 %)
0 diff
(100 %id)
TI_154011174   .a 3217 to 3826 726 to 110   AAA   617/1138
(54 %)
6 diff
(99.5 %id)
CA412493 Chondrosarcoma Grade II, Left Pelvis .a 3233 to 3826 612 to 19   AAA   594/594
(100 %)
1 diff
(99.9 %id)
AW274896 pooled germ cell tumors .a 3234 to 3827 594 to 1       594/594
(100 %)
1 diff
(99.9 %id)
BE326731 Kidney .a 3235 to 3825 591 to 1       591/591
(100 %)
1 diff
(99.9 %id)
AI253044 Kidney .a 3243 to 3718 477 to 2       476/477
(99 %)
0 diff
(100 %id)
AI253045 Kidney .a 3248 to 3826 588 to 14   AAA   575/578
(99 %)
16 diff
(97.3 %id)
BE348398 carcinoid, lung .a 3251 to 3825 575 to 1       575/575
(100 %)
1 diff
(99.9 %id)
AI422454 brain, glioblastoma (pooled) .a 3265 to 3826 562 to 1       562/562
(100 %)
13 diff
(97.7 %id)
BE504329 carcinoid, lung .a 3266 to 3825 560 to 1       560/560
(100 %)
2 diff
(99.7 %id)
BE046115 lymph node, lymphoma, follicular mixed small and largecell .a 3269 to 3718 449 to 2       448/449
(99 %)
0 diff
(100 %id)
AI422031 brain, glioblastoma (pooled) .a 3279 to 3830 549 to 1       549/549
(100 %)
12 diff
(97.9 %id)
BM752071 Ascites, stomach .a 3279 to 3781 1 to 501       501/501
(100 %)
7 diff
(98.7 %id)
AI636036 Kidney .a 3281 to 3830 549 to 1       549/549
(100 %)
5 diff
(99.1 %id)
CF528524 placenta .a 3282 to 3826 562 to 18   AAA   545/545
(100 %)
1 diff
(99.9 %id)
AI638234 pooled germ cell tumors .a 3283 to 3827 543 to 1       543/547
(99 %)
13 diff
(97.7 %id)
BE502645 pooled germ cell tumors .a 3283 to 3826 544 to 1       544/544
(100 %)
4 diff
(99.3 %id)
CB052121 leiomyosarcoma, soft tissue .a 3283 to 3830 2 to 549   fully sequenced, AAA   548/549
(99 %)
6 diff
(99.0 %id)
BM992438 Bone, Subchondral Bone .a 3283 to 3826 562 to 19   AAA   544/544
(100 %)
1 diff
(99.9 %id)
TI_151742367   .a 3284 to 3826 660 to 118   AAA   543/549
(98 %)
0 diff
(100 %id)
AI769615 2 pooled tumors (clear cell type), Kidney .a 3298 to 3829 535 to 4       532/538
(98 %)
0 diff
(100 %id)
EL950542 eyeball .a 3306 to 3827 47 to 568   AAA   522/568
(91 %)
6 diff
(99.0 %id)
AA827309 Kidney, kidney tumor .a 3313 to 3826 511 to 1       511/511
(100 %)
8 diff
(98.5 %id)
AW473733 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 3314 to 3718 406 to 2       405/406
(99 %)
0 diff
(100 %id)
BF195875 Kidney .a 3314 to 3829 517 to 2   tiling clone,   516/517
(99 %)
0 diff
(100 %id)
AI651990 pooled germ cell tumors .a 3318 to 3826 508 to 1       508/555
(91 %)
26 diff
(95.4 %id)
AW295314   .a 3323 to 3826 521 to 18   AAA   504/504
(100 %)
2 diff
(99.7 %id)
CB052120 leiomyosarcoma, soft tissue .a 3328 to 3830 526 to 24   fully sequenced, AAA   503/503
(100 %)
1 diff
(99.9 %id)
AI699041 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 3329 to 3718 391 to 2       390/411
(94 %)
0 diff
(100 %id)
BU734316 eye, RPE and Choroid .a 3329 to 3826 516 to 19   AAA   498/498
(100 %)
4 diff
(99.2 %id)
BF223247 pooled germ cell tumors .a 3335 to 3826 492 to 1       492/492
(100 %)
1 diff
(99.8 %id)
AW470179 adenocarcinoma, Pancreas .a 3345 to 3718 375 to 2       374/375
(99 %)
0 diff
(100 %id)
W93782 heart .a 3346 to 3651 1 to 306   fully sequenced,   306/306
(100 %)
1 diff
(99.7 %id)
BQ941755 sciatic nerve .a 3348 to 3827 1 to 480       480/512
(93 %)
4 diff
(99.3 %id)
N29943 nose, olfactory epithelium .a 3351 to 3826 479 to 1       479/479
(100 %)
4 diff
(99.2 %id)
AA768152 germinal center B cell .a 3353 to 3826 485 to 11   AAA   475/475
(100 %)
5 diff
(99.0 %id)
AI742360 pooled .a 3361 to 3829 470 to 2       469/472
(99 %)
0 diff
(100 %id)
AI423390 brain, glioblastoma (pooled) .a 3363 to 3826 463 to 1       463/561
(82 %)
16 diff
(97.2 %id)
AI266635 placenta .a 3364 to 3829 465 to 2       464/465
(99 %)
0 diff
(100 %id)
AI651842 pooled germ cell tumors .a 3364 to 3829 469 to 6       464/469
(98 %)
0 diff
(100 %id)
AI671844 pooled germ cell tumors .a 3368 to 3826 459 to 1       459/459
(100 %)
1 diff
(99.8 %id)
DB556216 hypothalamus .a 3372 to 3825 1 to 454     Submitted on the opposite strand 454/455
(99 %)
10 diff
(97.9 %id)
N52951 multiple sclerosis lesions .a 3373 to 3826 456 to 1       456/456
(100 %)
3 diff
(99.4 %id)
DB523040 testis .a 3376 to 3830 1 to 455     Submitted on the opposite strand 455/455
(100 %)
1 diff
(99.8 %id)
DB364240   .a 3379 to 3827 452 to 2       451/454
(99 %)
0 diff
(100 %id)
AI399700 Prostate .a 3381 to 3829 449 to 1       449/449
(100 %)
8 diff
(98.3 %id)
AI991643 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 3389 to 3829 445 to 3       443/445
(99 %)
0 diff
(100 %id)
BF002271 colon, colon tumor, RER+ .a 3389 to 3829 443 to 3       441/443
(99 %)
0 diff
(100 %id)
AI521170 Kidney .a 3390 to 3829 443 to 4       440/443
(99 %)
0 diff
(100 %id)
AI583691 pooled germ cell tumors .a 3390 to 3826 437 to 1       437/538
(81 %)
4 diff
(99.3 %id)
AI984615 Kidney .a 3390 to 3827 437 to 1       437/437
(100 %)
8 diff
(98.2 %id)
CA435788 lung, Metastatic Chondrosarcoma .a 3395 to 3826 450 to 19   AAA   432/432
(100 %)
0 diff
(100 %id)
AW293439   .a 3403 to 3827 442 to 18   AAA   425/425
(100 %)
2 diff
(99.6 %id)
AI925969 Kidney .a 3404 to 3826 423 to 1       423/423
(100 %)
6 diff
(98.6 %id)
BF940259 Kidney .a 3404 to 3826 423 to 1       423/423
(100 %)
1 diff
(99.8 %id)
AI309048 2 pooled tumors (clear cell type), Kidney .a 3408 to 3826 419 to 1       419/419
(100 %)
1 diff
(99.8 %id)
BE672236 pooled germ cell tumors .a 3409 to 3826 419 to 1       419/419
(100 %)
11 diff
(97.4 %id)
AA765205 germinal center B cell .a 3412 to 3826 425 to 11   AAA   415/415
(100 %)
3 diff
(99.3 %id)
AI672235 Kidney .a 3416 to 3826 411 to 1       411/411
(100 %)
1 diff
(99.8 %id)
AI754499 bone marrow stroma .a 3429 to 3826 416 to 19   AAA   398/398
(100 %)
1 diff
(99.8 %id)
CA430670 cell lines, Chondrosarcoma .a 3433 to 3826 412 to 19   AAA   394/394
(100 %)
3 diff
(99.3 %id)
CB049469 Prostate .a 3442 to 3826 7 to 391   fully sequenced, AAA   385/391
(98 %)
6 diff
(98.5 %id)
AI825778 pooled germ cell tumors .a 3445 to 3826 382 to 1       382/382
(100 %)
1 diff
(99.8 %id)
CD679433 eye, Trabecular meshwork .a 3452 to 3826 1 to 375   AAA   375/375
(100 %)
1 diff
(99.8 %id)
AI991636 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 3459 to 3829 375 to 3       373/375
(99 %)
0 diff
(100 %id)
BE857511 brain, glioblastoma (pooled) .a 3465 to 3826 362 to 1       362/362
(100 %)
1 diff
(99.8 %id)
BF732301 fibrotheoma, ovary .a 3466 to 3827 362 to 1       362/362
(100 %)
1 diff
(99.8 %id)
AI522198 Kidney .a 3477 to 3826 351 to 1       351/351
(100 %)
2 diff
(99.5 %id)
CB049468 Prostate .a 3482 to 3826 369 to 25   fully sequenced, AAA   345/345
(100 %)
1 diff
(99.8 %id)
BF971340 adrenal cortex carcinoma, cell line, adrenal gland .a 3495 to 3826 1 to 334   AAA   334/334
(100 %)
3 diff
(99.2 %id)
AW291935   .a 3519 to 3826 325 to 18   AAA   308/308
(100 %)
1 diff
(99.7 %id)
H99590 melanocyte .a 3541 to 3826 286 to 1       286/286
(100 %)
1 diff
(99.7 %id)
AW016414   .a 3544 to 3826 300 to 18   AAA   283/283
(100 %)
6 diff
(97.9 %id)
T28958 blood, white blood cells .a 3559 to 3786 1 to 228       228/228
(100 %)
1 diff
(99.6 %id)
CA748472 Alveolar Macrophage, lung .a 3576 to 3826 269 to 19   AAA   251/251
(100 %)
0 diff
(100 %id)
BM673067 eye, eye anterior segment .a 3620 to 3826 225 to 19   AAA   207/207
(100 %)
2 diff
(99.1 %id)
W93783 heart .a 3621 to 3826 205 to 1   fully sequenced,   205/205
(100 %)
1 diff
(99.6 %id)
AI262094 Kidney .a 3720 to 4162 27 to 469   tiling clone,   443/469
(94 %)
6 diff
(98.8 %id)
BI042032 nervous_tumor .a 3993 to 4528 15 to 550   tiling clone,   536/550
(97 %)
5 diff
(99.1 %id)
AF150431 umbilical cord blood .a 4442 to 5238 1 to 794   tiling clone,   794/794
(100 %)
4 diff
(99.5 %id)
AV742445 cord Blood .a 4442 to 5022 47 to 612   tiling clone,   566/615
(92 %)
7 diff
(98.9 %id)
DC401471 testis .b 1 to 520 1 to 524   tiling clone,   524/524
(100 %)
1 diff
(99.9 %id)
DC374092 brain .b 17 to 500 1 to 489       489/489
(100 %)
2 diff
(99.6 %id)
DC408435 thymus .b 17 to 468 1 to 455       455/455
(100 %)
0 diff
(100 %id)
CN287430 embryonic stem cells, cell lines H1, H7, andH9 .b 20 to 683 1 to 667       667/667
(100 %)
5 diff
(99.3 %id)
DB071399 testis .b 25 to 556 2 to 536   capped   535/535
(100 %)
1 diff
(99.9 %id)
AL710884 human skeletal muscle .b 29 to 462 1 to 437       437/437
(100 %)
0 diff
(100 %id)
DA315193 hippocampus .b 31 to 598 2 to 576   capped   575/575
(100 %)
6 diff
(99.0 %id)
CN287431 embryonic stem cells, cell lines H1, H7, andH9 .b 36 to 807 1 to 775       775/775
(100 %)
2 diff
(99.8 %id)
DA349303 substantia nigra .b 39 to 602 2 to 568   capped   567/570
(99 %)
1 diff
(99.9 %id)
DB457563 testis .b 39 to 508 1 to 473       473/473
(100 %)
0 diff
(100 %id)
DB229636 trachea .b 40 to 606 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DC405559 thymus .b 42 to 514 1 to 477       477/477
(100 %)
1 diff
(99.8 %id)
BX486869   .b 47 to 504 1 to 461       461/461
(100 %)
4 diff
(99.2 %id)
DA315374 hippocampus .b 48 to 577 2 to 535   capped   534/534
(100 %)
1 diff
(99.9 %id)
DA327747 hippocampus .b 48 to 592 2 to 550   capped   549/549
(100 %)
2 diff
(99.7 %id)
DB280918 uterus .b 48 to 588 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
BX957075   .b 49 to 611 1 to 566       566/566
(100 %)
0 diff
(100 %id)
BP278762   .b 49 to 630 1 to 582   tiling clone,   582/582
(100 %)
1 diff
(99.9 %id)
DA856668 placenta .b 50 to 609 2 to 564   capped   557/563
(98 %)
2 diff
(99.7 %id)
BX464108 brain, fetal brain .b 56 to 718 1 to 694       557/805
(69 %)
38 diff
(95.3 %id)
TI_44345757   .b 57 to 808 56 to 813       758/813
(93 %)
10 diff
(98.8 %id)
BI670281 brain, hypothalamus .b 62 to 808 1 to 754       754/754
(100 %)
11 diff
(98.6 %id)
DA391240 thalamus .b 64 to 639 2 to 580   capped   579/579
(100 %)
3 diff
(99.5 %id)
DA225758 brain .b 65 to 592 2 to 532   capped   531/531
(100 %)
1 diff
(99.9 %id)
CN287433 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 66 to 602 1 to 540       540/540
(100 %)
0 diff
(100 %id)
BX951271   .b 66 to 656 1 to 594       594/594
(100 %)
1 diff
(99.9 %id)
BX493543   .b 66 to 501 1 to 439       439/439
(100 %)
2 diff
(99.6 %id)
AK289761 brain .b 67 to 3064 1 to 3001 D34E A35D F36A E37F D38E ... tiling clone,   3001/3001
(100 %)
4 diff
(99.9 %id)
DC306669 cerebellum .b 67 to 540 1 to 477       477/477
(100 %)
3 diff
(99.4 %id)
DC325269 brain .b 67 to 540 1 to 477       477/477
(100 %)
1 diff
(99.8 %id)
CF995178 Human Placenta, placenta .b 67 to 718 28 to 682       655/824
(79 %)
7 diff
(99.2 %id)
BP284840 lung .b 67 to 636 1 to 572       572/582
(98 %)
5 diff
(99.2 %id)
BP285534 lung .b 67 to 647 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
BP287644 lung .b 67 to 636 1 to 572       572/581
(98 %)
6 diff
(99.0 %id)
DC367424   .b 67 to 534 1 to 471       471/471
(100 %)
0 diff
(100 %id)
DA047594   .b 68 to 639 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
DA094972 cerebellum .b 68 to 609 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
DA222463 brain .b 68 to 670 2 to 607   capped   606/606
(100 %)
0 diff
(100 %id)
DA239704 brain .b 68 to 642 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DA310140 hippocampus .b 68 to 664 2 to 599   capped   598/598
(100 %)
3 diff
(99.5 %id)
DA397167 thalamus .b 68 to 650 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
DA460555 tongue, tumor tissue .b 68 to 649 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
AU120699 whole embryo, mainly body .b 68 to 825 2 to 764   capped   763/763
(100 %)
5 diff
(99.4 %id)
CD250721 Blood vessels - aorta, basilar and artery .b 68 to 471 1 to 407       407/436
(93 %)
6 diff
(98.7 %id)
DA659047   .b 68 to 627 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA696122   .b 68 to 611 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA714188   .b 68 to 640 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA851640 placenta .b 68 to 661 2 to 598   capped   597/597
(100 %)
0 diff
(100 %id)
DA863011 placenta .b 68 to 632 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA994045 synovial membrane tissue from rheumatioidarthritis .b 68 to 606 2 to 545   capped   544/544
(100 %)
2 diff
(99.7 %id)
DB006218 breast, tumor tissue .b 68 to 607 2 to 544   capped   543/543
(100 %)
2 diff
(99.7 %id)
DB080668 testis .b 68 to 611 2 to 548   capped   547/547
(100 %)
2 diff
(99.7 %id)
DB162745 thymus .b 68 to 646 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
DB171112 kidney, tumor tissue .b 68 to 606 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
DB212557 trachea .b 68 to 611 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DB216570 trachea .b 68 to 613 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DB226595 trachea .b 68 to 642 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DB231701 trachea .b 68 to 632 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DB277500 uterus .b 68 to 594 2 to 531   capped   530/530
(100 %)
1 diff
(99.9 %id)
DB287133 uterus .b 68 to 615 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
BP350442 brain .b 70 to 649 1 to 582       582/582
(100 %)
5 diff
(99.2 %id)
DC415550 trachea .b 71 to 524 1 to 456       456/459
(99 %)
1 diff
(99.8 %id)
DA126034 cerebellum .b 72 to 641 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA389470 thalamus .b 72 to 641 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
BX476805   .b 72 to 430 1 to 362       362/362
(100 %)
4 diff
(98.9 %id)
BX505750   .b 72 to 710 1 to 642       642/642
(100 %)
3 diff
(99.6 %id)
BP281066   .b 72 to 661 1 to 593       593/593
(100 %)
3 diff
(99.5 %id)
DA723131   .b 72 to 627 2 to 563   capped   562/562
(100 %)
5 diff
(99.2 %id)
DA853950 placenta .b 72 to 636 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
DB282587 uterus .b 72 to 619 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DB291740 uterus .b 72 to 657 2 to 590   capped   589/589
(100 %)
2 diff
(99.7 %id)
BX470382   .b 73 to 688 1 to 619       619/619
(100 %)
1 diff
(99.9 %id)
DA197447 brain .b 74 to 639 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA312858 hippocampus .b 74 to 626 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA435929 tongue, tumor tissue .b 74 to 658 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
DA554532   .b 74 to 641 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
BP233597 coronary artery .b 74 to 661 1 to 588       588/588
(100 %)
9 diff
(98.5 %id)
DA756105   .b 74 to 638 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA834733 placenta .b 74 to 632 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB087313 testis .b 74 to 632 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB134440 thymus .b 74 to 634 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DB291494 uterus .b 74 to 658 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
DA020515   .b 75 to 652 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA105326 cerebellum .b 75 to 645 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA106648 cerebellum .b 75 to 612 2 to 543   capped   542/542
(100 %)
2 diff
(99.7 %id)
DA110812 cerebellum .b 75 to 625 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA194350 amygdala .b 75 to 651 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA214991 brain .b 75 to 632 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA219257 brain .b 75 to 599 2 to 529   capped   528/528
(100 %)
0 diff
(100 %id)
DA225971 brain .b 75 to 611 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA242307 brain .b 75 to 664 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
DA312147 hippocampus .b 75 to 550 2 to 480   capped   479/479
(100 %)
0 diff
(100 %id)
DA337836 hippocampus .b 75 to 665 2 to 595   capped   594/594
(100 %)
1 diff
(99.9 %id)
DA398343 thalamus .b 75 to 636 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA656894   .b 75 to 643 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA722301   .b 75 to 621 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB227998 trachea .b 75 to 652 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
DB282280 uterus .b 75 to 615 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DB282599 uterus .b 75 to 628 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB284000 uterus .b 75 to 613 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DB284333 uterus .b 75 to 619 2 to 548   capped   547/547
(100 %)
3 diff
(99.5 %id)
DB290328 uterus .b 75 to 648 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA238346 brain .b 77 to 620 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
BM827376 stomach .b 78 to 604 1 to 530       530/530
(100 %)
0 diff
(100 %id)
BP361163 thalamus .b 78 to 655 1 to 580       580/582
(99 %)
6 diff
(99.0 %id)
DA468528   .b 79 to 651 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
DA756884   .b 79 to 627 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
BP363540 lung .b 79 to 657 1 to 581       581/581
(100 %)
2 diff
(99.7 %id)
DA230311 brain .b 80 to 556 2 to 481   capped   480/480
(100 %)
0 diff
(100 %id)
DA335856 hippocampus .b 80 to 680 2 to 604   capped   603/604
(99 %)
2 diff
(99.7 %id)
DA754472   .b 80 to 582 2 to 507   capped   506/506
(100 %)
0 diff
(100 %id)
DA778670 brain .b 80 to 647 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DN997974 breast cancer, Mammary gland (cancer tissue) .b 80 to 572 1 to 494       494/494
(100 %)
11 diff
(97.8 %id)
DB285180 uterus .b 80 to 629 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA114991 cerebellum .b 81 to 632 2 to 556   capped   555/556
(99 %)
2 diff
(99.7 %id)
BP285364 lung .b 81 to 649 9 to 578       570/580
(98 %)
10 diff
(98.3 %id)
DB217781 trachea .b 81 to 569 2 to 493   capped   492/492
(100 %)
0 diff
(100 %id)
DB265422 uterus .b 81 to 660 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
BX475123   .b 84 to 585 1 to 505       505/505
(100 %)
4 diff
(99.3 %id)
BC016620 Testis, embryonal carcinoma .b 85 to 3710 1 to 3629 D34E A35D F36A E37F D38E ... tiling clone, available from MGC, AAA   3629/3629
(100 %)
4 diff
(99.9 %id)
BG259049 embryonal carcinoma, cell line, testis .b 86 to 851 1 to 775       772/796
(96 %)
26 diff
(96.8 %id)
BM461420 eye, retinoblastoma .b 86 to 877 3 to 799       797/1112
(71 %)
24 diff
(97.9 %id)
DR761003 embryonic stem .b 86 to 866 1 to 783       783/783
(100 %)
2 diff
(99.8 %id)
AW504862 lymph .b 87 to 560 1 to 477       477/477
(100 %)
4 diff
(99.2 %id)
DA880622   .b 88 to 826 2 to 752   capped   751/873
(86 %)
18 diff
(98.0 %id)
DA315108 hippocampus .b 89 to 608 2 to 524   capped   523/523
(100 %)
1 diff
(99.9 %id)
DA915819 small intestine .b 89 to 770 2 to 688   capped   685/687
(99 %)
2 diff
(99.8 %id)
DA996038 synovial membrane tissue from rheumatioidarthritis .b 89 to 649 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA187787 amygdala .b 90 to 628 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA333987 hippocampus .b 90 to 662 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA507289 brain .b 90 to 654 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA650120   .b 90 to 632 2 to 547   capped   546/547
(99 %)
1 diff
(99.9 %id)
DA656874   .b 90 to 660 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA721324   .b 90 to 652 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA850415 placenta .b 90 to 658 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA852375 placenta .b 90 to 637 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA855691 placenta .b 90 to 644 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DB150045 thymus .b 90 to 611 2 to 526   capped   525/525
(100 %)
0 diff
(100 %id)
DB217803 trachea .b 90 to 583 2 to 499   capped   498/498
(100 %)
1 diff
(99.8 %id)
DB235849 trachea .b 90 to 663 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DB279002 uterus .b 90 to 632 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DA224516 brain .b 92 to 602 2 to 516   capped   515/515
(100 %)
1 diff
(99.9 %id)
DA241358 brain .b 92 to 663 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
CN287429 embryonic stem cells, cell lines H1, H7, andH9 .b 93 to 807 1 to 720       720/720
(100 %)
5 diff
(99.4 %id)
DA315477 hippocampus .b 94 to 635 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA389089 thalamus .b 94 to 685 2 to 596   capped   595/595
(100 %)
1 diff
(99.9 %id)
DA452507 tongue, tumor tissue .b 94 to 655 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB060873 testis .b 94 to 655 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
TI_154161189   .b 94 to 765 77 to 747       672/750
(89 %)
24 diff
(96.8 %id)
DB242974 stomach, tumor tissue .b 94 to 654 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB277319 uterus .b 94 to 635 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DB289133 uterus .b 94 to 659 2 to 570   capped   569/570
(99 %)
1 diff
(99.9 %id)
CB267080 adipose .b 95 to 508 1 to 419       419/423
(99 %)
7 diff
(98.4 %id)
BM908255 astrocytoma grade IV, cell line, brain .b 96 to 406 1 to 314       314/1504
(20 %)
0 diff
(100 %id)
DA759664   .b 96 to 622 2 to 531   capped   530/530
(100 %)
0 diff
(100 %id)
CN287428 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 101 to 672 1 to 576       576/576
(100 %)
2 diff
(99.7 %id)
CN287435 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 101 to 672 1 to 575       575/575
(100 %)
1 diff
(99.9 %id)
CN287437 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 107 to 431 1 to 328       328/328
(100 %)
2 diff
(99.4 %id)
CN287434 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 112 to 649 1 to 540       540/540
(100 %)
1 diff
(99.9 %id)
CD643621 Embryonic Stem cells .b 123 to 915 12 to 806       795/863
(92 %)
10 diff
(98.9 %id)
BX464107 brain, fetal brain .b 3016 to 3680 666 to 1       666/666
(100 %)
22 diff
(96.7 %id)
DB331625 small intestine .b 3067 to 3549 478 to 1       478/507
(94 %)
10 diff
(98.1 %id)
AU146695 whole embryo, mainly body .b 3153 to 3710 553 to 1       553/554
(99 %)
12 diff
(97.9 %id)
NM_001145769.1   .c 1 to 3604 1 to 3607 exact RefSeq, AAA   3607/3607
(100 %)
2 diff
(100.0 %id)
BE766460 nervous_tumor .c 507 to 753 1 to 247   tiling clone,   247/247
(100 %)
1 diff
(99.6 %id)
AK295711 hippocampus .d 1 to 3078 1 to 3081 D34E A35D F36A E37F D38E ... tiling clone,   3081/3081
(100 %)
4 diff
(99.9 %id)
DC333810 hippocampus .d 1 to 559 1 to 562       562/562
(100 %)
2 diff
(99.7 %id)
AK311039 uterus .e 1 to 2941 1 to 2945 R330K S331K I332H A333S G334W ... tiling clone,   2945/2945
(100 %)
2 diff
(100.0 %id)
DC417955 trachea .e 1 to 439 1 to 442       442/450
(98 %)
4 diff
(99.2 %id)
DC422588 uterus .e 1 to 551 1 to 554       554/554
(100 %)
0 diff
(100 %id)
DB486912 hypothalamus .e 5 to 441 1 to 439       439/445
(98 %)
16 diff
(96.5 %id)
DC371009   .e 6 to 552 1 to 550       550/550
(100 %)
1 diff
(99.9 %id)
NR_027299.1   .f 1 to 3591 1 to 3594 exact RefSeq, tiling clone, AAA   3594/3594
(100 %)
2 diff
(100.0 %id)
BX471483   .f 43 to 407 1 to 369       369/369
(100 %)
2 diff
(99.5 %id)
DW450723 Liver .f 64 to 246 12 to 197       186/197
(94 %)
4 diff
(98.0 %id)
CD619031   .f 69 to 188 1 to 120       120/120
(100 %)
0 diff
(100 %id)
AU077075   .f 69 to 150 1 to 83       83/83
(100 %)
1 diff
(98.8 %id)
AU128095   .f 73 to 512 2 to 444   capped   443/450
(98 %)
5 diff
(98.9 %id)
AU143301   .f 73 to 823 2 to 759   capped   758/763
(99 %)
10 diff
(98.7 %id)
EC555214 Prostate .f 97 to 204 1 to 108       108/109
(99 %)
0 diff
(100 %id)
BF087386 head_neck .f 120 to 327 212 to 5       208/212
(98 %)
0 diff
(100 %id)
AW084643 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma .f 127 to 389 264 to 1       264/264
(100 %)
4 diff
(98.5 %id)
BF306190 muscle, rhabdomyosarcoma .f 540 to 1188 1 to 649       649/652
(99 %)
6 diff
(99.1 %id)
BG335426 choriocarcinoma, placenta .f 541 to 1258 1 to 728       728/972
(74 %)
44 diff
(95.5 %id)
BE733920 choriocarcinoma, placenta .f 560 to 1296 1 to 723       723/972
(74 %)
23 diff
(97.7 %id)
BE278952 choriocarcinoma, placenta .f 561 to 1180 1 to 619       619/619
(100 %)
1 diff
(99.9 %id)
BE730655 choriocarcinoma, placenta .f 561 to 1276 1 to 712       712/902
(78 %)
12 diff
(98.7 %id)
BG751164 eye, normal pigmented retinal epithelium .f 702 to 1459 1 to 754       754/754
(100 %)
9 diff
(98.9 %id)
AU125870   .f 715 to 1504 2 to 793   capped   792/792
(100 %)
6 diff
(99.3 %id)
DA174513 amygdala .f 741 to 1196 2 to 458   capped   457/477
(95 %)
6 diff
(98.8 %id)
DA786885 brain .f 744 to 1330 2 to 588   capped   587/587
(100 %)
2 diff
(99.7 %id)
CO247975 Chondrosarcoma Lung Metastasis cell lines, lung .f 751 to 1460 1 to 706       708/818
(86 %)
13 diff
(98.5 %id)
AA190694   .f 765 to 1093 1 to 336     Submitted on the opposite strand 336/353
(95 %)
7 diff
(98.1 %id)
DA372496 thalamus .f 774 to 1393 2 to 621   capped   620/620
(100 %)
0 diff
(100 %id)
BQ898206 dorsal root ganglia .f 783 to 1689 27 to 937       911/938
(97 %)
16 diff
(98.3 %id)
CV572052 cornea, eye .f 797 to 1381 1 to 585       585/585
(100 %)
0 diff
(100 %id)
CD619034   .f 800 to 1414 1 to 615       615/621
(99 %)
8 diff
(98.8 %id)
CD619033   .f 805 to 1414 615 to 6       610/620
(98 %)
0 diff
(100 %id)
EU530531   .f 827 to 968 1 to 142       142/142
(100 %)
0 diff
(100 %id)
BF207269 brain, neuroblastoma .f 862 to 1288 1 to 427       427/932
(45 %)
10 diff
(99.0 %id)
BF314903 brain, neuroblastoma .f 862 to 1547 1 to 679       679/900
(75 %)
26 diff
(97.2 %id)
BF317427 brain, neuroblastoma .f 862 to 1575 1 to 710       710/715
(99 %)
20 diff
(97.3 %id)
CD619035   .f 872 to 1414 1 to 545       548/551
(99 %)
10 diff
(98.2 %id)
CD619037   .f 872 to 1414 1 to 546       549/552
(99 %)
10 diff
(98.2 %id)
CD619036   .f 876 to 1410 536 to 3       534/543
(98 %)
0 diff
(100 %id)
CD619038   .f 876 to 1414 541 to 3       539/548
(98 %)
0 diff
(100 %id)
BE260062 brain, neuroblastoma .f 881 to 1705 1 to 813       813/816
(99 %)
21 diff
(97.5 %id)
BE260137 brain, neuroblastoma .f 882 to 1475 1 to 595       595/596
(99 %)
19 diff
(96.9 %id)
BE262208 brain, neuroblastoma .f 882 to 1140 1 to 259       259/280
(92 %)
1 diff
(99.7 %id)
DA876799 Prostate .f 891 to 1427 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
BI255928 cervical carcinoma cell line, cervix .f 896 to 1594 1 to 703       703/705
(99 %)
18 diff
(97.5 %id)
BQ918948 large cell carcinoma, lung .f 929 to 1851 1 to 926       926/939
(98 %)
18 diff
(98.1 %id)
BQ308142 breast .f 965 to 1614 649 to 4       646/654
(98 %)
0 diff
(100 %id)
CX872630 embryonic stem .f 987 to 1759 1 to 773       773/773
(100 %)
1 diff
(99.9 %id)
BM556322 duodenal adenocarcinoma, cell line, small intestine .f 988 to 1849 1 to 862       862/1025
(84 %)
12 diff
(98.9 %id)
CT001726 T-Lymphocytes .f 1006 to 1571 1 to 566       566/566
(100 %)
2 diff
(99.7 %id)
BE254313 eye, retinoblastoma .f 1031 to 1616 1 to 587       587/587
(100 %)
1 diff
(99.9 %id)
CD619039   .f 1172 to 1961 8 to 797       790/797
(99 %)
13 diff
(98.4 %id)
CD619041   .f 1172 to 1833 8 to 668       661/668
(98 %)
6 diff
(99.2 %id)
DA703320   .f 1184 to 1738 2 to 558   capped   557/557
(100 %)
3 diff
(99.5 %id)
EU530533   .f 1208 to 1435 1 to 228       228/228
(100 %)
1 diff
(99.6 %id)
BF685974 leiomyosarcoma cell line, uterus .f 1281 to 1856 1 to 580       580/805
(72 %)
23 diff
(97.2 %id)
BF683997 leiomyosarcoma cell line, uterus .f 1281 to 1980 1 to 699       699/930
(75 %)
46 diff
(95.1 %id)
BF972749 leiomyosarcoma cell line, uterus .f 1281 to 2007 1 to 731       731/927
(78 %)
21 diff
(97.8 %id)
BG337505 leiomyosarcoma cell line, uterus .f 1281 to 1829 1 to 548       548/549
(99 %)
2 diff
(99.7 %id)
BG338028 leiomyosarcoma cell line, uterus .f 1281 to 2138 1 to 852       854/994
(85 %)
46 diff
(95.4 %id)
BG340238 leiomyosarcoma cell line, uterus .f 1281 to 1856 1 to 577   tiling clone,   577/951
(60 %)
13 diff
(98.7 %id)
BG748625 eye, normal pigmented retinal epithelium .f 1304 to 1960 1 to 657       657/657
(100 %)
2 diff
(99.7 %id)
BG752811 eye, normal pigmented retinal epithelium .f 1304 to 1923 1 to 619       619/619
(100 %)
5 diff
(99.2 %id)
DA382665 thalamus .f 1336 to 1886 2 to 552   capped   551/551
(100 %)
2 diff
(99.7 %id)
CD619040   .f 1384 to 2270 906 to 13       894/906
(98 %)
14 diff
(98.5 %id)
EU530523   .f 1421 to 2011 1 to 591       591/591
(100 %)
2 diff
(99.7 %id)
AU280283   .f 1483 to 2047 1 to 567       567/567
(100 %)
3 diff
(99.5 %id)
BP294039 lung .f 1496 to 2077 1 to 583       583/583
(100 %)
5 diff
(99.2 %id)
CD619042   .f 1499 to 2270 786 to 14       773/790
(97 %)
2 diff
(99.8 %id)
CR990359 T-Lymphocytes .f 1499 to 2301 1 to 805       805/806
(99 %)
4 diff
(99.6 %id)
BG341433 B-cells, primary B-cells from tonsils (cell line) .f 1508 to 2271 1 to 772       770/774
(99 %)
24 diff
(96.9 %id)
CF141168 CNCAP(3)T-225 cell line, Prostate .f 1509 to 1916 8 to 415       408/415
(98 %)
7 diff
(98.4 %id)
TI_154171867   .f 1509 to 2069 80 to 638       559/559
(100 %)
5 diff
(99.2 %id)
AA657557   .f 1514 to 1976 1 to 469       469/473
(99 %)
15 diff
(96.9 %id)
EU530532   .f 1516 to 2143 1 to 626       626/626
(100 %)
2 diff
(99.7 %id)
BU602325 mixed (pool of 40 RNAs) .f 1535 to 2205 1 to 679       679/773
(87 %)
8 diff
(99.0 %id)
BE074001 breast .f 1565 to 1846 309 to 28     Submitted on the opposite strand 282/309
(91 %)
0 diff
(100 %id)
CF140093 CNCAP(3)T-225 cell line, Prostate .f 1574 to 2065 7 to 498       492/498
(98 %)
8 diff
(98.4 %id)
TI_154170510   .f 1574 to 2280 77 to 791       713/996
(71 %)
22 diff
(97.8 %id)
BG489139 large cell carcinoma, lung .f 1578 to 2290 1 to 731       663/754
(87 %)
17 diff
(97.8 %id)
CR978524 T-Lymphocytes .f 1637 to 2209 1 to 574       574/575
(99 %)
6 diff
(99.0 %id)
BG949227 breast .f 1676 to 1856 221 to 41       181/221
(81 %)
0 diff
(100 %id)
DA377251 thalamus .f 1681 to 2242 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
CN287427 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .f 1682 to 2341 1 to 662       662/662
(100 %)
9 diff
(98.7 %id)
BE257840 eye, retinoblastoma .f 1826 to 2282 1 to 458       458/458
(100 %)
2 diff
(99.6 %id)
BE252615 eye, retinoblastoma .f 1826 to 2428 1 to 603       603/609
(99 %)
2 diff
(99.7 %id)
BP237200 coronary artery .f 1859 to 2445 1 to 587       587/587
(100 %)
0 diff
(100 %id)
BM729318 eye, fetal eye .f 1907 to 2479 1 to 573       573/573
(100 %)
0 diff
(100 %id)
AL537156 brain, fetal brain .f 1916 to 2836 1 to 920       920/920
(100 %)
6 diff
(99.4 %id)
CR615074 fetal brain .f 1917 to 3518 1 to 1603       1603/1603
(100 %)
1 diff
(100.0 %id)
BQ477814 insulinoma, Pancreas .f 1930 to 2357 1 to 428       428/428
(100 %)
4 diff
(99.1 %id)
BF981364 duodenal adenocarcinoma, cell line, small intestine .f 1948 to 2710 1 to 756       756/783
(96 %)
21 diff
(97.4 %id)
BQ307301 breast .f 1980 to 2548 1 to 571       571/571
(100 %)
13 diff
(97.8 %id)
AU150414   .f 2003 to 2489 485 to 1       485/515
(94 %)
7 diff
(98.7 %id)
EU530522   .f 2006 to 2123 1 to 118       118/118
(100 %)
3 diff
(97.5 %id)
AI123414 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f 2040 to 2489 450 to 1       450/450
(100 %)
1 diff
(99.8 %id)
BQ892451 sympathetic trunk .f 2056 to 2895 1 to 845       845/916
(92 %)
11 diff
(98.8 %id)
BE221715 Kidney .f 2088 to 2479 392 to 1       392/392
(100 %)
0 diff
(100 %id)
BG178613 adenocarcinoma, cell line, Prostate .f 2103 to 2457 1 to 361       361/1152
(31 %)
11 diff
(99.1 %id)
BI056344 placenta_normal .f 2121 to 2306 191 to 5       187/195
(95 %)
0 diff
(100 %id)
CV569806 cornea, eye .f 2221 to 2859 1 to 639       639/639
(100 %)
1 diff
(99.9 %id)
BE702371 nervous_normal .f 2265 to 2592 345 to 17       329/350
(94 %)
0 diff
(100 %id)
AW903238 nervous_normal .f 2302 to 2577 283 to 8       276/283
(97 %)
3 diff
(99.0 %id)
CB269927 adipose .f 2328 to 2653 1 to 326       326/326
(100 %)
0 diff
(100 %id)
BG571695 placenta .f 2406 to 3165 1 to 758       758/759
(99 %)
12 diff
(98.5 %id)
BF090364 nervous_normal .f 2416 to 2932 524 to 5       520/524
(99 %)
0 diff
(100 %id)
BM856351 stomach .f 2429 to 2901 1 to 473       473/473
(100 %)
2 diff
(99.6 %id)
BM852149 stomach .f 2430 to 2724 1 to 295       295/295
(100 %)
1 diff
(99.7 %id)
BM708556 eye, RPE and Choroid .f 2440 to 2909 1 to 470   fully sequenced,   470/470
(100 %)
1 diff
(99.8 %id)
BM833387 stomach .f 2468 to 2814 1 to 347       347/347
(100 %)
3 diff
(99.2 %id)
CN287436 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .f 2486 to 3069 1 to 590       596/590
(101 %)
9 diff
(98.5 %id)
BX283619 eye, normal pigmented retinal epithelium .f 2489 to 3005 1 to 517       517/517
(100 %)
2 diff
(99.7 %id)
BG749233 eye, normal pigmented retinal epithelium .f 2489 to 3355 1 to 876       876/876
(100 %)
15 diff
(98.3 %id)
AA329947   .f 2558 to 2859 1 to 304       304/305
(99 %)
5 diff
(98.4 %id)
BU931236 ovary, teratocarcinoma, cell line .f 2625 to 3505 1 to 891       891/894
(99 %)
21 diff
(97.7 %id)
BM710507 eye, RPE and Choroid .f 2728 to 3358 1 to 631       631/631
(100 %)
3 diff
(99.6 %id)
BM716371 eye, RPE and Choroid .f 2728 to 3123 1 to 397       397/397
(100 %)
4 diff
(99.0 %id)
H83519 melanocyte .f 2879 to 3317 19 to 464       446/469
(95 %)
15 diff
(96.9 %id)
BU730851 eye, RPE and Choroid .f 2879 to 3591 730 to 19   fully sequenced, AAA   712/712
(100 %)
4 diff
(99.5 %id)
AW470536 carcinoid, lung .f 2886 to 3433 549 to 1       549/549
(100 %)
9 diff
(98.4 %id)
AU160410   .f 2909 to 3454 549 to 1       549/550
(99 %)
16 diff
(97.1 %id)
BM707434 eye, eye anterior segment .f 2911 to 3334 9 to 432       424/432
(98 %)
7 diff
(98.4 %id)
AI608658 brain, tumor, 5 pooled (see description) .f 2915 to 3411 495 to 1       495/495
(100 %)
15 diff
(97.0 %id)
BG115681 duodenal adenocarcinoma, cell line, small intestine .f 2973 to 3411 28 to 465   AAA   438/465
(94 %)
6 diff
(98.8 %id)
AU149444   .f 2977 to 3420 444 to 2       443/451
(98 %)
0 diff
(100 %id)
AW885163 ovary .f 3013 to 3217 23 to 225       203/231
(87 %)
6 diff
(97.5 %id)
BE833393 ovary .f 3018 to 3212 213 to 9       205/218
(94 %)
0 diff
(100 %id)
BQ477392 insulinoma, Pancreas .f 3026 to 3591 589 to 24   AAA   566/566
(100 %)
1 diff
(99.9 %id)
AA622159 colon, colon tumor RER+ .f 3073 to 3376 303 to 1       303/303
(100 %)
6 diff
(98.1 %id)
DW435471 Liver .f 3167 to 3405 17 to 255       239/255
(93 %)
6 diff
(97.7 %id)
EC529339 Prostate .f 3198 to 3308 1 to 110       110/110
(100 %)
2 diff
(98.2 %id)
BM752063 Ascites, stomach .f 3218 to 3326 184 to 302       276/302
(91 %)
28 diff
(90.8 %id)
BF591481 brain, glioblastoma (pooled) .f 3466 to 3591 126 to 1       126/126
(100 %)
0 diff
(100 %id)
C00500   .f 3481 to 3591 1 to 111       111/111
(100 %)
1 diff
(99.1 %id)
EU530529   .g 1 to 544 1 to 544   tiling clone,   544/544
(100 %)
1 diff
(99.9 %id)
EU530534   .g 1 to 519 1 to 519       519/519
(100 %)
1 diff
(99.9 %id)
CN287432 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .g 447 to 985 1 to 539   tiling clone,   539/539
(100 %)
1 diff
(99.9 %id)
BX644722   .g 560 to 1266 10 to 716   tiling clone,   709/716
(99 %)
8 diff
(98.9 %id)
DB106831 thymus .g 738 to 1321 2 to 584   tiling clone, capped   583/583
(100 %)
2 diff
(99.7 %id)
BF356858 head_neck .g 1171 to 1366 280 to 88   tiling clone,   193/280
(68 %)
7 diff
(97.5 %id)
TI_57202242   .g 1342 to 2173 37 to 867   tiling clone,   831/868
(95 %)
4 diff
(99.6 %id)
BI824163 pooled brain, lung, testis .g 1343 to 2173 1 to 830   tiling clone,   830/831
(99 %)
4 diff
(99.6 %id)
BI917509 brain .g 1746 to 2527 1 to 779       779/779
(100 %)
6 diff
(99.3 %id)
TI_57244881   .g 1746 to 2527 60 to 838       779/838
(92 %)
6 diff
(99.3 %id)
BE538249 cervix .g 2085 to 2533 1 to 449   tiling clone,   449/452
(99 %)
2 diff
(99.6 %id)
BF525375 brain, glioblastoma with EGFR amplification .g 2112 to 2812 24 to 712   tiling clone,   689/954
(72 %)
19 diff
(98.1 %id)
BM454293 lymph, lymphoma, cell line .g 2246 to 3127 1 to 892   tiling clone,   892/1094
(81 %)
33 diff
(97.0 %id)
BF763269 colon_est .g 2364 to 2708 1 to 345       345/345
(100 %)
5 diff
(98.6 %id)
DB342993 thymus .g 2862 to 3432 571 to 1   tiling clone,   571/571
(100 %)
0 diff
(100 %id)
DB215368 trachea .h 1 to 554 4 to 557   tiling clone, capped   556/556
(100 %)
1 diff
(99.9 %id)
BQ649424 hepatocellular carcinoma, cell line, Liver .h 393 to 1373 1 to 975   tiling clone,   975/983
(99 %)
34 diff
(96.6 %id)
CN267694 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .i 1 to 650 1 to 650   tiling clone,   650/650
(100 %)
0 diff
(100 %id)
AI241765 brain, tumor, 5 pooled (see description) .i 4 to 321 318 to 1       318/318
(100 %)
0 diff
(100 %id)
DA810890 brain .i 557 to 1116 2 to 563   tiling clone, capped   562/562
(100 %)
2 diff
(99.7 %id)
BE675695 B-cell, chronic lymphotic leukemia .i 567 to 1020 454 to 1       454/459
(98 %)
1 diff
(99.8 %id)
DA957203 Spleen .i 662 to 1226 2 to 566   tiling clone, capped   565/565
(100 %)
0 diff
(100 %id)
DB289947 uterus .i 868 to 1458 2 to 591   tiling clone, capped   590/590
(100 %)
1 diff
(99.9 %id)
CA430178 cell lines, Chondrosarcoma .i 1401 to 2126 738 to 19   tiling clone, AAA   720/722
(99 %)
9 diff
(98.8 %id)
DA550297   .j 1 to 570 2 to 571 exact tiling clone, capped   570/570
(100 %)
0 diff
(100 %id)
DA995151 synovial membrane tissue from rheumatioidarthritis .k 1 to 553 2 to 554 exact tiling clone, capped   553/553
(100 %)
0 diff
(100 %id)
BG994035 head_neck .l 1 to 304 16 to 318   tiling clone,   303/318
(95 %)
6 diff
(98.2 %id)
BM700758 eye, eye anterior segment .l 142 to 567 9 to 434   tiling clone,   426/434
(98 %)
6 diff
(98.7 %id)
BU728447 eye, eye anterior segment .l 927 to 1291 383 to 19   tiling clone, AAA   365/365
(100 %)
10 diff
(97.3 %id)
EU530525   .m 1 to 443 1 to 443   tiling clone,   443/449
(98 %)
2 diff
(99.6 %id)
EU530527   .m 1 to 443 1 to 443       443/449
(98 %)
2 diff
(99.6 %id)
EU530524   .m 45 to 562 1 to 518   tiling clone,   518/518
(100 %)
1 diff
(99.9 %id)
EU530526   .m 45 to 562 1 to 518       518/518
(100 %)
1 diff
(99.9 %id)
DB144328 thymus .n-u 1 to 529 2 to 530   tiling clone, capped   529/529
(100 %)
0 diff
(100 %id)
CA389326 eye, RPE/choroid .n-u 132 to 724 1 to 593 R42M tiling clone,   593/593
(100 %)
3 diff
(99.5 %id)
DB280034 uterus .o-u 1 to 492 2 to 493 exact tiling clone, capped   492/492
(100 %)
0 diff
(100 %id)
DB223872 trachea .o-u 22 to 577 2 to 557 exact tiling clone, capped   556/556
(100 %)
0 diff
(100 %id)
DA957319 Spleen .p 1 to 568 2 to 569   tiling clone, capped   568/568
(100 %)
0 diff
(100 %id)
CN295142 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .q-u 1 to 539 11 to 548 P2S tiling clone,   538/548
(98 %)
6 diff
(99.0 %id)
BE829343 lung_tumor .r-u 1 to 173 173 to 1 exact tiling clone,   173/173
(100 %)
0 diff
(100 %id)
BE825643 lung_normal Gene XPC, variant not shown         This clone was ignored    
CB268397 adipose Gene XPC, variant not shown         This clone was ignored    
BX476794   Gene XPC, variant not shown         This clone was ignored    
AU099076   Gene XPC, variant not shown         This clone was ignored    
BG116273 duodenal adenocarcinoma, cell line, small intestine Gene XPC, variant not shown         Suspected internal deletion, this clone was ignored    
BG620310 placenta Gene XPC, variant not shown         Suspected internal deletion, this clone was ignored    
CK000090 mixed Gene XPC, variant not shown         Suspected internal deletion, this clone was ignored    
DB381018 placenta Gene XPC, variant not shown         This clone was ignored    
DA833986 placenta Gene XPC, variant not shown       capped This clone was ignored    
DB067476 testis Gene XPC, variant not shown       capped This clone was ignored    
TI_154036016   Gene XPC, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BU619654 Cell Line, Chondrosarcoma Gene XPC, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n-u, .o-u, .p, .q-u, .r-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI